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Results: 1 to 20 of 42

1.

Genome-wide analyses of LINE-LINE-mediated nonallelic homologous recombination.

Startek M, Szafranski P, Gambin T, Campbell IM, Hixson P, Shaw CA, Stankiewicz P, Gambin A.

Nucleic Acids Res. 2015 Feb 27;43(4):2188-98. doi: 10.1093/nar/gku1394. Epub 2015 Jan 22.

PMID:
25613453
[PubMed - in process]
Free Article
2.

Molecular and clinical analyses of 16q24.1 duplications involving FOXF1 identify an evolutionarily unstable large minisatellite.

Dharmadhikari AV, Gambin T, Szafranski P, Cao W, Probst FJ, Jin W, Fang P, Gogolewski K, Gambin A, George-Abraham JK, Golla S, Boidein F, Duban-Bedu B, Delobel B, Andrieux J, Becker K, Holinski-Feder E, Cheung S, Stankiewicz P.

BMC Med Genet. 2014 Dec 4;15(1):128. [Epub ahead of print]

PMID:
25472632
[PubMed - as supplied by publisher]
Free Article
3.

Towards automated discrimination of lipids versus peptides from full scan mass spectra.

Dittwald P, Nghia VT, Harris GA, Caprioli RM, Van de Plas R, Laukens K, Gambin A, Valkenborg D.

EuPA Open Proteom. 2014 Sep 1;4:87-100.

PMID:
25414814
[PubMed]
4.

Human endogenous retroviral elements promote genome instability via non-allelic homologous recombination.

Campbell IM, Gambin T, Dittwald P, Beck CR, Shuvarikov A, Hixson P, Patel A, Gambin A, Shaw CA, Rosenfeld JA, Stankiewicz P.

BMC Biol. 2014 Sep 23;12:74. doi: 10.1186/s12915-014-0074-4.

PMID:
25246103
[PubMed - in process]
Free PMC Article
5.

Comparative analyses of lung transcriptomes in patients with alveolar capillary dysplasia with misalignment of pulmonary veins and in foxf1 heterozygous knockout mice.

Sen P, Dharmadhikari AV, Majewski T, Mohammad MA, Kalin TV, Zabielska J, Ren X, Bray M, Brown HM, Welty S, Thevananther S, Langston C, Szafranski P, Justice MJ, Kalinichenko VV, Gambin A, Belmont J, Stankiewicz P.

PLoS One. 2014 Apr 10;9(4):e94390. doi: 10.1371/journal.pone.0094390. eCollection 2014.

PMID:
24722050
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Application of array comparative genomic hybridization in 256 patients with developmental delay or intellectual disability.

Bartnik M, Nowakowska B, Derwińska K, Wiśniowiecka-Kowalnik B, Kędzior M, Bernaciak J, Ziemkiewicz K, Gambin T, Sykulski M, Bezniakow N, Korniszewski L, Kutkowska-Kaźmierczak A, Klapecki J, Szczałuba K, Shaw CA, Mazurczak T, Gambin A, Obersztyn E, Bocian E, Stankiewicz P.

J Appl Genet. 2014 Feb;55(1):125-44. doi: 10.1007/s13353-013-0181-x. Epub 2013 Dec 3.

PMID:
24297458
[PubMed - in process]
Free PMC Article
7.

Chromosome conformation capture-on-chip analysis of long-range cis-interactions of the SOX9 promoter.

Smyk M, Szafranski P, Startek M, Gambin A, Stankiewicz P.

Chromosome Res. 2013 Dec;21(8):781-8. doi: 10.1007/s10577-013-9386-4. Epub 2013 Nov 20.

PMID:
24254229
[PubMed - indexed for MEDLINE]
8.

StochDecomp--Matlab package for noise decomposition in stochastic biochemical systems.

Jetka T, Charzyńska A, Gambin A, Stumpf MP, Komorowski M.

Bioinformatics. 2014 Jan 1;30(1):137-8. doi: 10.1093/bioinformatics/btt631. Epub 2013 Nov 4.

PMID:
24191070
[PubMed - indexed for MEDLINE]
Free Article
9.

Computational models of the JAK1/2-STAT1 signaling.

Gambin A, Charzyńska A, Ellert-Miklaszewska A, Rybiński M.

JAKSTAT. 2013 Jul 1;2(3):e24672. doi: 10.4161/jkst.24672. Epub 2013 Apr 15. Review.

PMID:
24069559
[PubMed]
Free PMC Article
10.

Modelling the efficacy of hyperthermia treatment.

Rybinski M, Szymanska Z, Lasota S, Gambin A.

J R Soc Interface. 2013 Aug 28;10(88):20130527. doi: 10.1098/rsif.2013.0527. Print 2013 Nov 6.

PMID:
23985732
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Genomic parasites or symbionts? Modeling the effects of environmental pressure on transposition activity in asexual populations.

Startek M, Le Rouzic A, Capy P, Grzebelus D, Gambin A.

Theor Popul Biol. 2013 Dec;90:145-51. doi: 10.1016/j.tpb.2013.07.004. Epub 2013 Aug 12.

PMID:
23948701
[PubMed - indexed for MEDLINE]
Free Article
12.

Recurrent HERV-H-mediated 3q13.2-q13.31 deletions cause a syndrome of hypotonia and motor, language, and cognitive delays.

Shuvarikov A, Campbell IM, Dittwald P, Neill NJ, Bialer MG, Moore C, Wheeler PG, Wallace SE, Hannibal MC, Murray MF, Giovanni MA, Terespolsky D, Sodhi S, Cassina M, Viskochil D, Moghaddam B, Herman K, Brown CW, Beck CR, Gambin A, Cheung SW, Patel A, Lamb AN, Shaffer LG, Ellison JW, Ravnan JB, Stankiewicz P, Rosenfeld JA.

Hum Mutat. 2013 Oct;34(10):1415-23. doi: 10.1002/humu.22384. Epub 2013 Aug 13.

PMID:
23878096
[PubMed - indexed for MEDLINE]
13.

Multiple samples aCGH analysis for rare CNVs detection.

Sykulski M, Gambin T, Bartnik M, Derwińska K, Wiśniowiecka-Kowalnik B, Stankiewicz P, Gambin A.

J Clin Bioinforma. 2013 Jun 11;3(1):12. doi: 10.1186/2043-9113-3-12.

PMID:
23758813
[PubMed]
Free PMC Article
14.

Functional performance of aCGH design for clinical cytogenetics.

Gambin T, Stankiewicz P, Sykulski M, Gambin A.

Comput Biol Med. 2013 Jul;43(6):775-85. doi: 10.1016/j.compbiomed.2013.02.008. Epub 2013 Mar 16.

PMID:
23668354
[PubMed - indexed for MEDLINE]
15.

NAHR-mediated copy-number variants in a clinical population: mechanistic insights into both genomic disorders and Mendelizing traits.

Dittwald P, Gambin T, Szafranski P, Li J, Amato S, Divon MY, Rodríguez Rojas LX, Elton LE, Scott DA, Schaaf CP, Torres-Martinez W, Stevens AK, Rosenfeld JA, Agadi S, Francis D, Kang SH, Breman A, Lalani SR, Bacino CA, Bi W, Milosavljevic A, Beaudet AL, Patel A, Shaw CA, Lupski JR, Gambin A, Cheung SW, Stankiewicz P.

Genome Res. 2013 Sep;23(9):1395-409. doi: 10.1101/gr.152454.112. Epub 2013 May 8.

PMID:
23657883
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Confounding by repetitive elements and CpG islands does not explain the association between hypomethylation and genomic instability.

Harris RA, Shaw C, Li J, Cheung SW, Coarfa C, Jeong M, Goodell MA, White LD, Patel A, Kang SH, Chinault AC, Gambin T, Gambin A, Lupski JR, Milosavljevic A.

PLoS Genet. 2013;9(2):e1003333. doi: 10.1371/journal.pgen.1003333. Epub 2013 Feb 28. No abstract available.

PMID:
23468659
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Assessment of the role of copy-number variants in 150 patients with congenital heart defects.

Derwińska K, Bartnik M, Wiśniowiecka-Kowalnik B, Jagła M, Rudziński A, Pietrzyk JJ, Kawalec W, Ziółkowska L, Kutkowska-Kaźmierczak A, Gambin T, Sykulski M, Shaw CA, Gambin A, Mazurczak T, Obersztyn E, Bocian E, Stankiewicz P.

Med Wieku Rozwoj. 2012 Jul-Sep;16(3):175-82.

PMID:
23378395
[PubMed - indexed for MEDLINE]
Free Article
18.

BRAIN: a universal tool for high-throughput calculations of the isotopic distribution for mass spectrometry.

Dittwald P, Claesen J, Burzykowski T, Valkenborg D, Gambin A.

Anal Chem. 2013 Feb 19;85(4):1991-4. doi: 10.1021/ac303439m. Epub 2013 Jan 31.

PMID:
23350948
[PubMed - indexed for MEDLINE]
19.

Application of custom-designed oligonucleotide array CGH in 145 patients with autistic spectrum disorders.

Wiśniowiecka-Kowalnik B, Kastory-Bronowska M, Bartnik M, Derwińska K, Dymczak-Domini W, Szumbarska D, Ziemka E, Szczałuba K, Sykulski M, Gambin T, Gambin A, Shaw CA, Mazurczak T, Obersztyn E, Bocian E, Stankiewicz P.

Eur J Hum Genet. 2013 Jun;21(6):620-5. doi: 10.1038/ejhg.2012.219. Epub 2012 Oct 3.

PMID:
23032108
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Inverted low-copy repeats and genome instability--a genome-wide analysis.

Dittwald P, Gambin T, Gonzaga-Jauregui C, Carvalho CM, Lupski JR, Stankiewicz P, Gambin A.

Hum Mutat. 2013 Jan;34(1):210-20. doi: 10.1002/humu.22217. Epub 2012 Oct 11.

PMID:
22965494
[PubMed - indexed for MEDLINE]
Free PMC Article
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