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Results: 1 to 20 of 45

1.

Computational modeling of sphingolipid metabolism.

Wronowska W, Charzyńska A, Nienałtowski K, Gambin A.

BMC Syst Biol. 2015 Aug 15;9:47. doi: 10.1186/s12918-015-0176-9.

2.

On the Fine Isotopic Distribution and Limits to Resolution in Mass Spectrometry.

Dittwald P, Valkenborg D, Claesen J, Rockwood AL, Gambin A.

J Am Soc Mass Spectrom. 2015 Aug 12. [Epub ahead of print]

PMID:
26265039
3.

MuTAnT: a family of Mutator-like transposable elements targeting TA microsatellites in Medicago truncatula.

Stawujak K, Startek M, Gambin A, Grzebelus D.

Genetica. 2015 Aug;143(4):433-40. doi: 10.1007/s10709-015-9842-5. Epub 2015 May 17.

4.

Genome-wide analyses of LINE-LINE-mediated nonallelic homologous recombination.

Startek M, Szafranski P, Gambin T, Campbell IM, Hixson P, Shaw CA, Stankiewicz P, Gambin A.

Nucleic Acids Res. 2015 Feb 27;43(4):2188-98. doi: 10.1093/nar/gku1394. Epub 2015 Jan 22.

5.

Molecular and clinical analyses of 16q24.1 duplications involving FOXF1 identify an evolutionarily unstable large minisatellite.

Dharmadhikari AV, Gambin T, Szafranski P, Cao W, Probst FJ, Jin W, Fang P, Gogolewski K, Gambin A, George-Abraham JK, Golla S, Boidein F, Duban-Bedu B, Delobel B, Andrieux J, Becker K, Holinski-Feder E, Cheung SW, Stankiewicz P.

BMC Med Genet. 2014 Dec 4;15:128. doi: 10.1186/s12881-014-0128-z.

6.

Towards automated discrimination of lipids versus peptides from full scan mass spectra.

Dittwald P, Nghia VT, Harris GA, Caprioli RM, Van de Plas R, Laukens K, Gambin A, Valkenborg D.

EuPA Open Proteom. 2014 Sep 1;4:87-100.

7.

Human endogenous retroviral elements promote genome instability via non-allelic homologous recombination.

Campbell IM, Gambin T, Dittwald P, Beck CR, Shuvarikov A, Hixson P, Patel A, Gambin A, Shaw CA, Rosenfeld JA, Stankiewicz P.

BMC Biol. 2014 Sep 23;12:74. doi: 10.1186/s12915-014-0074-4.

8.

Comparative analyses of lung transcriptomes in patients with alveolar capillary dysplasia with misalignment of pulmonary veins and in foxf1 heterozygous knockout mice.

Sen P, Dharmadhikari AV, Majewski T, Mohammad MA, Kalin TV, Zabielska J, Ren X, Bray M, Brown HM, Welty S, Thevananther S, Langston C, Szafranski P, Justice MJ, Kalinichenko VV, Gambin A, Belmont J, Stankiewicz P.

PLoS One. 2014 Apr 10;9(4):e94390. doi: 10.1371/journal.pone.0094390. eCollection 2014.

9.

Application of array comparative genomic hybridization in 256 patients with developmental delay or intellectual disability.

Bartnik M, Nowakowska B, Derwińska K, Wiśniowiecka-Kowalnik B, Kędzior M, Bernaciak J, Ziemkiewicz K, Gambin T, Sykulski M, Bezniakow N, Korniszewski L, Kutkowska-Kaźmierczak A, Klapecki J, Szczałuba K, Shaw CA, Mazurczak T, Gambin A, Obersztyn E, Bocian E, Stankiewicz P.

J Appl Genet. 2014 Feb;55(1):125-44. doi: 10.1007/s13353-013-0181-x. Epub 2013 Dec 3.

10.

Chromosome conformation capture-on-chip analysis of long-range cis-interactions of the SOX9 promoter.

Smyk M, Szafranski P, Startek M, Gambin A, Stankiewicz P.

Chromosome Res. 2013 Dec;21(8):781-8. doi: 10.1007/s10577-013-9386-4. Epub 2013 Nov 20.

PMID:
24254229
11.

StochDecomp--Matlab package for noise decomposition in stochastic biochemical systems.

Jetka T, Charzyńska A, Gambin A, Stumpf MP, Komorowski M.

Bioinformatics. 2014 Jan 1;30(1):137-8. doi: 10.1093/bioinformatics/btt631. Epub 2013 Nov 4.

12.

Computational models of the JAK1/2-STAT1 signaling.

Gambin A, Charzyńska A, Ellert-Miklaszewska A, Rybiński M.

JAKSTAT. 2013 Jul 1;2(3):e24672. doi: 10.4161/jkst.24672. Epub 2013 Apr 15. Review.

13.

Modelling the efficacy of hyperthermia treatment.

Rybinski M, Szymanska Z, Lasota S, Gambin A.

J R Soc Interface. 2013 Aug 28;10(88):20130527. doi: 10.1098/rsif.2013.0527. Print 2013 Nov 6.

14.

Genomic parasites or symbionts? Modeling the effects of environmental pressure on transposition activity in asexual populations.

Startek M, Le Rouzic A, Capy P, Grzebelus D, Gambin A.

Theor Popul Biol. 2013 Dec;90:145-51. doi: 10.1016/j.tpb.2013.07.004. Epub 2013 Aug 12.

15.

Recurrent HERV-H-mediated 3q13.2-q13.31 deletions cause a syndrome of hypotonia and motor, language, and cognitive delays.

Shuvarikov A, Campbell IM, Dittwald P, Neill NJ, Bialer MG, Moore C, Wheeler PG, Wallace SE, Hannibal MC, Murray MF, Giovanni MA, Terespolsky D, Sodhi S, Cassina M, Viskochil D, Moghaddam B, Herman K, Brown CW, Beck CR, Gambin A, Cheung SW, Patel A, Lamb AN, Shaffer LG, Ellison JW, Ravnan JB, Stankiewicz P, Rosenfeld JA.

Hum Mutat. 2013 Oct;34(10):1415-23. doi: 10.1002/humu.22384. Epub 2013 Aug 13.

PMID:
23878096
16.

Multiple samples aCGH analysis for rare CNVs detection.

Sykulski M, Gambin T, Bartnik M, Derwińska K, Wiśniowiecka-Kowalnik B, Stankiewicz P, Gambin A.

J Clin Bioinforma. 2013 Jun 11;3(1):12. doi: 10.1186/2043-9113-3-12.

17.

Functional performance of aCGH design for clinical cytogenetics.

Gambin T, Stankiewicz P, Sykulski M, Gambin A.

Comput Biol Med. 2013 Jul;43(6):775-85. doi: 10.1016/j.compbiomed.2013.02.008. Epub 2013 Mar 16.

PMID:
23668354
18.

NAHR-mediated copy-number variants in a clinical population: mechanistic insights into both genomic disorders and Mendelizing traits.

Dittwald P, Gambin T, Szafranski P, Li J, Amato S, Divon MY, Rodríguez Rojas LX, Elton LE, Scott DA, Schaaf CP, Torres-Martinez W, Stevens AK, Rosenfeld JA, Agadi S, Francis D, Kang SH, Breman A, Lalani SR, Bacino CA, Bi W, Milosavljevic A, Beaudet AL, Patel A, Shaw CA, Lupski JR, Gambin A, Cheung SW, Stankiewicz P.

Genome Res. 2013 Sep;23(9):1395-409. doi: 10.1101/gr.152454.112. Epub 2013 May 8.

19.

Confounding by repetitive elements and CpG islands does not explain the association between hypomethylation and genomic instability.

Harris RA, Shaw C, Li J, Cheung SW, Coarfa C, Jeong M, Goodell MA, White LD, Patel A, Kang SH, Chinault AC, Gambin T, Gambin A, Lupski JR, Milosavljevic A.

PLoS Genet. 2013;9(2):e1003333. doi: 10.1371/journal.pgen.1003333. Epub 2013 Feb 28. No abstract available.

20.

Assessment of the role of copy-number variants in 150 patients with congenital heart defects.

Derwińska K, Bartnik M, Wiśniowiecka-Kowalnik B, Jagła M, Rudziński A, Pietrzyk JJ, Kawalec W, Ziółkowska L, Kutkowska-Kaźmierczak A, Gambin T, Sykulski M, Shaw CA, Gambin A, Mazurczak T, Obersztyn E, Bocian E, Stankiewicz P.

Med Wieku Rozwoj. 2012 Jul-Sep;16(3):175-82.

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