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Results: 1 to 20 of 159

1.

GIL, a new c-di-GMP-binding protein domain involved in regulation of cellulose synthesis in enterobacteria.

Fang X, Ahmad I, Blanka A, Schottkowski M, Cimdins A, Galperin MY, Römling U, Gomelsky M.

Mol Microbiol. 2014 Aug;93(3):439-52. doi: 10.1111/mmi.12672. Epub 2014 Jul 1.

PMID:
24942809
[PubMed - in process]
2.

Phylogenomic reconstruction of archaeal fatty acid metabolism.

Dibrova DV, Galperin MY, Mulkidjanian AY.

Environ Microbiol. 2014 Apr;16(4):907-18. doi: 10.1111/1462-2920.12359.

PMID:
24818264
[PubMed - indexed for MEDLINE]
3.

The 2014 Nucleic Acids Research Database Issue and an updated NAR online Molecular Biology Database Collection.

Fernández-Suárez XM, Rigden DJ, Galperin MY.

Nucleic Acids Res. 2014 Jan;42(Database issue):D1-6. doi: 10.1093/nar/gkt1282. Epub 2013 Dec 6.

PMID:
24316579
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

The COMBREX project: design, methodology, and initial results.

Anton BP, Chang YC, Brown P, Choi HP, Faller LL, Guleria J, Hu Z, Klitgord N, Levy-Moonshine A, Maksad A, Mazumdar V, McGettrick M, Osmani L, Pokrzywa R, Rachlin J, Swaminathan R, Allen B, Housman G, Monahan C, Rochussen K, Tao K, Bhagwat AS, Brenner SE, Columbus L, de Crécy-Lagard V, Ferguson D, Fomenkov A, Gadda G, Morgan RD, Osterman AL, Rodionov DA, Rodionova IA, Rudd KE, Söll D, Spain J, Xu SY, Bateman A, Blumenthal RM, Bollinger JM, Chang WS, Ferrer M, Friedberg I, Galperin MY, Gobeill J, Haft D, Hunt J, Karp P, Klimke W, Krebs C, Macelis D, Madupu R, Martin MJ, Miller JH, O'Donovan C, Palsson B, Ruch P, Setterdahl A, Sutton G, Tate J, Yakunin A, Tchigvintsev D, Plata G, Hu J, Greiner R, Horn D, Sjölander K, Salzberg SL, Vitkup D, Letovsky S, Segrè D, DeLisi C, Roberts RJ, Steffen M, Kasif S.

PLoS Biol. 2013;11(8):e1001638. doi: 10.1371/journal.pbio.1001638. Epub 2013 Aug 27. No abstract available.

PMID:
24013487
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Bacterial second messengers, cGMP and c-di-GMP, in a quest for regulatory dominance.

Gomelsky M, Galperin MY.

EMBO J. 2013 Sep 11;32(18):2421-3. doi: 10.1038/emboj.2013.193. Epub 2013 Aug 20. No abstract available.

PMID:
23963313
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Evolution of cytochrome bc complexes: from membrane-anchored dehydrogenases of ancient bacteria to triggers of apoptosis in vertebrates.

Dibrova DV, Cherepanov DA, Galperin MY, Skulachev VP, Mulkidjanian AY.

Biochim Biophys Acta. 2013 Nov-Dec;1827(11-12):1407-27. doi: 10.1016/j.bbabio.2013.07.006. Epub 2013 Jul 19. Review.

PMID:
23871937
[PubMed - indexed for MEDLINE]
7.

A genomic update on clostridial phylogeny: Gram-negative spore formers and other misplaced clostridia.

Yutin N, Galperin MY.

Environ Microbiol. 2013 Oct;15(10):2631-41. doi: 10.1111/1462-2920.12173. Epub 2013 Jul 9.

PMID:
23834245
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

How many signal peptides are there in bacteria?

Ivankov DN, Payne SH, Galperin MY, Bonissone S, Pevzner PA, Frishman D.

Environ Microbiol. 2013 Apr;15(4):983-90. doi: 10.1111/1462-2920.12105.

PMID:
23556536
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Cyclic di-GMP: the first 25 years of a universal bacterial second messenger.

Römling U, Galperin MY, Gomelsky M.

Microbiol Mol Biol Rev. 2013 Mar;77(1):1-52. doi: 10.1128/MMBR.00043-12. Review.

PMID:
23471616
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

The 2013 Nucleic Acids Research Database Issue and the online molecular biology database collection.

Fernández-Suárez XM, Galperin MY.

Nucleic Acids Res. 2013 Jan;41(Database issue):D1-7. doi: 10.1093/nar/gks1297. Epub 2012 Nov 30.

PMID:
23203983
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Open questions on the origin of life at anoxic geothermal fields.

Mulkidjanian AY, Bychkov AY, Dibrova DV, Galperin MY, Koonin EV.

Orig Life Evol Biosph. 2012 Oct;42(5):507-16. doi: 10.1007/s11084-012-9315-0. Epub 2012 Nov 7.

PMID:
23132762
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

The role of energy in the emergence of biology from chemistry.

Dibrova DV, Chudetsky MY, Galperin MY, Koonin EV, Mulkidjanian AY.

Orig Life Evol Biosph. 2012 Oct;42(5):459-68. doi: 10.1007/s11084-012-9308-z.

PMID:
23100130
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Genomic determinants of sporulation in Bacilli and Clostridia: towards the minimal set of sporulation-specific genes.

Galperin MY, Mekhedov SL, Puigbo P, Smirnov S, Wolf YI, Rigden DJ.

Environ Microbiol. 2012 Nov;14(11):2870-90. doi: 10.1111/j.1462-2920.2012.02841.x. Epub 2012 Aug 13.

PMID:
22882546
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Origin of first cells at terrestrial, anoxic geothermal fields.

Mulkidjanian AY, Bychkov AY, Dibrova DV, Galperin MY, Koonin EV.

Proc Natl Acad Sci U S A. 2012 Apr 3;109(14):E821-30. doi: 10.1073/pnas.1117774109. Epub 2012 Feb 13.

PMID:
22331915
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

The 2012 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection.

Galperin MY, Fernández-Suárez XM.

Nucleic Acids Res. 2012 Jan;40(Database issue):D1-8. doi: 10.1093/nar/gkr1196. Epub 2011 Dec 5.

PMID:
22144685
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Divergence and convergence in enzyme evolution.

Galperin MY, Koonin EV.

J Biol Chem. 2012 Jan 2;287(1):21-8. doi: 10.1074/jbc.R111.241976. Epub 2011 Nov 8. Review.

PMID:
22069324
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Planctomycetes and eukaryotes: a case of analogy not homology.

McInerney JO, Martin WF, Koonin EV, Allen JF, Galperin MY, Lane N, Archibald JM, Embley TM.

Bioessays. 2011 Nov;33(11):810-7. doi: 10.1002/bies.201100045. Epub 2011 Aug 22.

PMID:
21858844
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

New structural and functional contexts of the Dx[DN]xDG linear motif: insights into evolution of calcium-binding proteins.

Rigden DJ, Woodhead DD, Wong PW, Galperin MY.

PLoS One. 2011;6(6):e21507. doi: 10.1371/journal.pone.0021507. Epub 2011 Jun 24.

PMID:
21720552
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Towards BioDBcore: a community-defined information specification for biological databases.

Gaudet P, Bairoch A, Field D, Sansone SA, Taylor C, Attwood TK, Bateman A, Blake JA, Bult CJ, Cherry JM, Chisholm RL, Cochrane G, Cook CE, Eppig JT, Galperin MY, Gentleman R, Goble CA, Gojobori T, Hancock JM, Howe DG, Imanishi T, Kelso J, Landsman D, Lewis SE, Karsch Mizrachi I, Orchard S, Ouellette BF, Ranganathan S, Richardson L, Rocca-Serra P, Schofield PN, Smedley D, Southan C, Tan TW, Tatusova T, Whetzel PL, White O, Yamasaki C; BioDBCore Working Group.

Database (Oxford). 2011 Jan 4;2011:baq027. doi: 10.1093/database/baq027. Print 2011.

PMID:
21205783
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

The 2011 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection.

Galperin MY, Cochrane GR.

Nucleic Acids Res. 2011 Jan;39(Database issue):D1-6. doi: 10.1093/nar/gkq1243.

PMID:
21177655
[PubMed - indexed for MEDLINE]
Free PMC Article

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