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Results: 1 to 20 of 31

1.

On the structure and dynamics of the complex of the nucleosome and the linker histone.

Pachov GV, Gabdoulline RR, Wade RC.

Nucleic Acids Res. 2011 Jul;39(12):5255-63. doi: 10.1093/nar/gkr101. Epub 2011 Feb 25.

PMID:
21355036
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Brownian dynamics simulation of protein solutions: structural and dynamical properties.

Mereghetti P, Gabdoulline RR, Wade RC.

Biophys J. 2010 Dec 1;99(11):3782-91. doi: 10.1016/j.bpj.2010.10.035.

PMID:
21112303
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Cross-species analysis of the glycolytic pathway by comparison of molecular interaction fields.

Stein M, Gabdoulline RR, Wade RC.

Mol Biosyst. 2010 Jan;6(1):152-64. doi: 10.1039/b912398a. Epub 2009 Sep 7.

PMID:
20024078
[PubMed - indexed for MEDLINE]
5.

webPIPSA: a web server for the comparison of protein interaction properties.

Richter S, Wenzel A, Stein M, Gabdoulline RR, Wade RC.

Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W276-80. doi: 10.1093/nar/gkn181. Epub 2008 Apr 17.

PMID:
18420653
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

The acidic, glutamine-rich Mpn474 protein of Mycoplasma pneumoniae is surface exposed and covers the complete cell.

Hegermann J, Halbedel S, Dumke R, Regula J, Gabdoulline RR, Mayer F, Stülke J, Herrmann R.

Microbiology. 2008 Apr;154(Pt 4):1185-92. doi: 10.1099/mic.0.2007/013342-0.

PMID:
18375811
[PubMed - indexed for MEDLINE]
Free Article
7.

Calculating enzyme kinetic parameters from protein structures.

Stein M, Gabdoulline RR, Wade RC.

Biochem Soc Trans. 2008 Feb;36(Pt 1):51-4. doi: 10.1042/BST0360051. Review.

PMID:
18208384
[PubMed - indexed for MEDLINE]
8.

qPIPSA: relating enzymatic kinetic parameters and interaction fields.

Gabdoulline RR, Stein M, Wade RC.

BMC Bioinformatics. 2007 Oct 5;8:373.

PMID:
17919319
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Bridging from molecular simulation to biochemical networks.

Stein M, Gabdoulline RR, Wade RC.

Curr Opin Struct Biol. 2007 Apr;17(2):166-72. Epub 2007 Mar 28. Review.

PMID:
17395455
[PubMed - indexed for MEDLINE]
10.

ProSAT2--Protein Structure Annotation Server.

Gabdoulline RR, Ulbrich S, Richter S, Wade RC.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W79-83.

PMID:
16845114
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Comparison of the binding and reactivity of plant and mammalian peroxidases to indole derivatives by computational docking.

Hallingbäck HR, Gabdoulline RR, Wade RC.

Biochemistry. 2006 Mar 7;45(9):2940-50.

PMID:
16503648
[PubMed - indexed for MEDLINE]
12.

Diffusional encounter of barnase and barstar.

Spaar A, Dammer C, Gabdoulline RR, Wade RC, Helms V.

Biophys J. 2006 Mar 15;90(6):1913-24. Epub 2005 Dec 16.

PMID:
16361332
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

ProSAT: functional annotation of protein 3D structures.

Gabdoulline RR, Hoffmann R, Leitner F, Wade RC.

Bioinformatics. 2003 Sep 1;19(13):1723-5.

PMID:
15593408
[PubMed - indexed for MEDLINE]
Free Article
14.

How optimal are the binding energetics of barnase and barstar?

Wang T, Tomic S, Gabdoulline RR, Wade RC.

Biophys J. 2004 Sep;87(3):1618-30.

PMID:
15345541
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Computational approaches to structural and functional analysis of plastocyanin and other blue copper proteins.

De Rienzo F, Gabdoulline RR, Wade RC, Sola M, Menziani MC.

Cell Mol Life Sci. 2004 May;61(10):1123-42. Review.

PMID:
15141299
[PubMed - indexed for MEDLINE]
16.

Concerted simulations reveal how peroxidase compound III formation results in cellular oscillations.

Gabdoulline RR, Kummer U, Olsen LF, Wade RC.

Biophys J. 2003 Sep;85(3):1421-8.

PMID:
12944259
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

MolSurfer: A macromolecular interface navigator.

Gabdoulline RR, Wade RC, Walther D.

Nucleic Acids Res. 2003 Jul 1;31(13):3349-51.

PMID:
12824324
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Biomolecular diffusional association.

Gabdoulline RR, Wade RC.

Curr Opin Struct Biol. 2002 Apr;12(2):204-13. Review.

PMID:
11959498
[PubMed - indexed for MEDLINE]
19.

Electrostatic analysis and Brownian dynamics simulation of the association of plastocyanin and cytochrome f.

De Rienzo F, Gabdoulline RR, Menziani MC, De Benedetti PG, Wade RC.

Biophys J. 2001 Dec;81(6):3090-104.

PMID:
11720977
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Protein-protein association: investigation of factors influencing association rates by brownian dynamics simulations.

Gabdoulline RR, Wade RC.

J Mol Biol. 2001 Mar 9;306(5):1139-55.

PMID:
11237623
[PubMed - indexed for MEDLINE]

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