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Results: 1 to 20 of 92

1.

Gene Expansion Shapes Genome Architecture in the Human Pathogen Lichtheimia corymbifera: An Evolutionary Genomics Analysis in the Ancient Terrestrial Mucorales (Mucoromycotina).

Schwartze VU, Winter S, Shelest E, Marcet-Houben M, Horn F, Wehner S, Linde J, Valiante V, Sammeth M, Riege K, Nowrousian M, Kaerger K, Jacobsen ID, Marz M, Brakhage AA, Gabaldón T, Böcker S, Voigt K.

PLoS Genet. 2014 Aug 14;10(8):e1004496. doi: 10.1371/journal.pgen.1004496. eCollection 2014 Aug.

PMID:
25121733
[PubMed - in process]
Free PMC Article
2.

Big data and other challenges in the quest for orthologs.

Sonnhammer EL, Gabaldón T, Sousa da Silva AW, Martin M, Robinson-Rechavi M, Boeckmann B, Thomas PD, Dessimoz C; the Quest for Orthologs consortium.

Bioinformatics. 2014 Jul 26. pii: btu492. [Epub ahead of print]

PMID:
25064571
[PubMed - as supplied by publisher]
Free Article
3.

Systematic phenotyping of a large-scale Candida glabrata deletion collection reveals novel antifungal tolerance genes.

Schwarzmüller T, Ma B, Hiller E, Istel F, Tscherner M, Brunke S, Ames L, Firon A, Green B, Cabral V, Marcet-Houben M, Jacobsen ID, Quintin J, Seider K, Frohner I, Glaser W, Jungwirth H, Bachellier-Bassi S, Chauvel M, Zeidler U, Ferrandon D, Gabaldón T, Hube B, d'Enfert C, Rupp S, Cormack B, Haynes K, Kuchler K.

PLoS Pathog. 2014 Jun 19;10(6):e1004211. doi: 10.1371/journal.ppat.1004211. eCollection 2014 Jun.

PMID:
24945925
[PubMed - in process]
Free PMC Article
4.

From community approaches to single-cell genomics: the discovery of ubiquitous hyperhalophilic Bacteroidetes generalists.

Gomariz M, Martínez-García M, Santos F, Rodriguez F, Capella-Gutiérrez S, Gabaldón T, Rosselló-Móra R, Meseguer I, Antón J.

ISME J. 2014 Jun 13. doi: 10.1038/ismej.2014.95. [Epub ahead of print]

PMID:
24926861
[PubMed - as supplied by publisher]
5.

Apolipoprotein L2 contains a BH3-like domain but it does not behave as a BH3-only protein.

Galindo-Moreno J, Iurlaro R, El Mjiyad N, Díez-Pérez J, Gabaldón T, Muñoz-Pinedo C.

Cell Death Dis. 2014 Jun 5;5:e1275. doi: 10.1038/cddis.2014.237.

PMID:
24901046
[PubMed - in process]
6.

Evolutionary considerations on the origin of peroxisomes from the endoplasmic reticulum, and their relationships with mitochondria.

Gabaldón T.

Cell Mol Life Sci. 2014 Jul;71(13):2379-82. doi: 10.1007/s00018-014-1640-1. Epub 2014 May 17. No abstract available.

PMID:
24838097
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

The complete genome of Blastobotrys (Arxula) adeninivorans LS3 - a yeast of biotechnological interest.

Kunze G, Gaillardin C, Czernicka M, Durrens P, Martin T, Böer E, Gabaldón T, Cruz JA, Talla E, Marck C, Goffeau A, Barbe V, Baret P, Baronian K, Beier S, Bleykasten C, Bode R, Casaregola S, Despons L, Fairhead C, Giersberg M, Gierski PP, Hähnel U, Hartmann A, Jankowska D, Jubin C, Jung P, Lafontaine I, Leh-Louis V, Lemaire M, Marcet-Houben M, Mascher M, Morel G, Richard GF, Riechen J, Sacerdot C, Sarkar A, Savel G, Schacherer J, Sherman DJ, Stein N, Straub ML, Thierry A, Trautwein-Schult A, Vacherie B, Westhof E, Worch S, Dujon B, Souciet JL, Wincker P, Scholz U, Neuvéglise C.

Biotechnol Biofuels. 2014 Apr 24;7:66. doi: 10.1186/1754-6834-7-66. eCollection 2014.

PMID:
24834124
[PubMed]
Free PMC Article
8.

Genome comparison of Candida orthopsilosis clinical strains reveals the existence of hybrids between two distinct subspecies.

Pryszcz LP, Németh T, Gácser A, Gabaldón T.

Genome Biol Evol. 2014 May;6(5):1069-78. doi: 10.1093/gbe/evu082.

PMID:
24747362
[PubMed - in process]
Free PMC Article
9.

Synonymous mutations frequently act as driver mutations in human cancers.

Supek F, Miñana B, Valcárcel J, Gabaldón T, Lehner B.

Cell. 2014 Mar 13;156(6):1324-35. doi: 10.1016/j.cell.2014.01.051.

PMID:
24630730
[PubMed - indexed for MEDLINE]
10.

Inferring gene function from evolutionary change in signatures of translation efficiency.

Krisko A, Copic T, Gabaldón T, Lehner B, Supek F.

Genome Biol. 2014 Mar 3;15(3):R44. doi: 10.1186/gb-2014-15-3-r44.

PMID:
24580753
[PubMed - in process]
Free PMC Article
11.

High variability of mitochondrial gene order among fungi.

Aguileta G, de Vienne DM, Ross ON, Hood ME, Giraud T, Petit E, Gabaldón T.

Genome Biol Evol. 2014;6(2):451-65. doi: 10.1093/gbe/evu028.

PMID:
24504088
[PubMed - in process]
Free PMC Article
12.

A phylogenomics approach for selecting robust sets of phylogenetic markers.

Capella-Gutierrez S, Kauff F, Gabaldón T.

Nucleic Acids Res. 2014 Apr;42(7):e54. doi: 10.1093/nar/gku071. Epub 2014 Jan 29.

PMID:
24476915
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

The complete mitochondrial genome of the Giant Manta ray, Manta birostris.

Hinojosa-Alvarez S, Díaz-Jaimes P, Marcet-Houben M, Gabaldón T.

Mitochondrial DNA. 2014 Jan 10. [Epub ahead of print]

PMID:
24409907
[PubMed - as supplied by publisher]
14.

The genome of the recently domesticated crop plant sugar beet (Beta vulgaris).

Dohm JC, Minoche AE, Holtgräwe D, Capella-Gutiérrez S, Zakrzewski F, Tafer H, Rupp O, Sörensen TR, Stracke R, Reinhardt R, Goesmann A, Kraft T, Schulz B, Stadler PF, Schmidt T, Gabaldón T, Lehrach H, Weisshaar B, Himmelbauer H.

Nature. 2014 Jan 23;505(7484):546-9. doi: 10.1038/nature12817. Epub 2013 Dec 18.

PMID:
24352233
[PubMed - indexed for MEDLINE]
15.

Complete DNA sequence of Kuraishia capsulata illustrates novel genomic features among budding yeasts (Saccharomycotina).

Morales L, Noel B, Porcel B, Marcet-Houben M, Hullo MF, Sacerdot C, Tekaia F, Leh-Louis V, Despons L, Khanna V, Aury JM, Barbe V, Couloux A, Labadie K, Pelletier E, Souciet JL, Boekhout T, Gabaldon T, Wincker P, Dujon B.

Genome Biol Evol. 2013;5(12):2524-39. doi: 10.1093/gbe/evt201.

PMID:
24317973
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

eggNOG v4.0: nested orthology inference across 3686 organisms.

Powell S, Forslund K, Szklarczyk D, Trachana K, Roth A, Huerta-Cepas J, Gabaldón T, Rattei T, Creevey C, Kuhn M, Jensen LJ, von Mering C, Bork P.

Nucleic Acids Res. 2014 Jan;42(Database issue):D231-9. doi: 10.1093/nar/gkt1253. Epub 2013 Dec 1.

PMID:
24297252
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

PhylomeDB v4: zooming into the plurality of evolutionary histories of a genome.

Huerta-Cepas J, Capella-Gutiérrez S, Pryszcz LP, Marcet-Houben M, Gabaldón T.

Nucleic Acids Res. 2014 Jan;42(Database issue):D897-902. doi: 10.1093/nar/gkt1177. Epub 2013 Nov 25.

PMID:
24275491
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Unexpected genomic variability in clinical and environmental strains of the pathogenic yeast Candida parapsilosis.

Pryszcz LP, Németh T, Gácser A, Gabaldón T.

Genome Biol Evol. 2013;5(12):2382-92. doi: 10.1093/gbe/evt185.

PMID:
24259314
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

The genome and development-dependent transcriptomes of Pyronema confluens: a window into fungal evolution.

Traeger S, Altegoer F, Freitag M, Gabaldon T, Kempken F, Kumar A, Marcet-Houben M, Pöggeler S, Stajich JE, Nowrousian M.

PLoS Genet. 2013;9(9):e1003820. doi: 10.1371/journal.pgen.1003820. Epub 2013 Sep 19.

PMID:
24068976
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Comparative genomics of emerging pathogens in the Candida glabrata clade.

Gabaldón T, Martin T, Marcet-Houben M, Durrens P, Bolotin-Fukuhara M, Lespinet O, Arnaise S, Boisnard S, Aguileta G, Atanasova R, Bouchier C, Couloux A, Creno S, Almeida Cruz J, Devillers H, Enache-Angoulvant A, Guitard J, Jaouen L, Ma L, Marck C, Neuvéglise C, Pelletier E, Pinard A, Poulain J, Recoquillay J, Westhof E, Wincker P, Dujon B, Hennequin C, Fairhead C.

BMC Genomics. 2013 Sep 14;14:623. doi: 10.1186/1471-2164-14-623.

PMID:
24034898
[PubMed - in process]
Free PMC Article

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