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Items: 1 to 20 of 118

1.

Late acquisition of mitochondria by a host with chimaeric prokaryotic ancestry.

Pittis AA, Gabaldón T.

Nature. 2016 Feb 3. doi: 10.1038/nature16941. [Epub ahead of print]

PMID:
26840490
2.

Genome sequencing and secondary metabolism of the postharvest pathogen Penicillium griseofulvum.

Banani H, Marcet-Houben M, Ballester AR, Abbruscato P, González-Candelas L, Gabaldón T, Spadaro D.

BMC Genomics. 2016 Jan 5;17(1):19. doi: 10.1186/s12864-015-2347-x.

3.

Horizontal acquisition of toxic alkaloid synthesis in a clade of plant associated fungi.

Marcet-Houben M, Gabaldón T.

Fungal Genet Biol. 2016 Jan;86:71-80. doi: 10.1016/j.fgb.2015.12.006. Epub 2015 Dec 10.

4.

The birth of a deadly yeast: tracing the evolutionary emergence of virulence traits in Candida glabrata.

Gabaldón T, Carreté L.

FEMS Yeast Res. 2016 Mar;16(2). pii: fov110. doi: 10.1093/femsyr/fov110. Epub 2015 Dec 17.

PMID:
26684722
5.

Contrasting Genomic Diversity in Two Closely Related Postharvest Pathogens: Penicillium digitatum and Penicillium expansum.

Julca I, Droby S, Sela N, Marcet-Houben M, Gabaldón T.

Genome Biol Evol. 2015 Dec 14;8(1):218-27. doi: 10.1093/gbe/evv252.

6.

The Leishmania metaphylome: a comprehensive survey of Leishmania protein phylogenetic relationships.

Valdivia HO, Scholte LL, Oliveira G, Gabaldón T, Bartholomeu DC.

BMC Genomics. 2015 Oct 30;16:887. doi: 10.1186/s12864-015-2091-2.

7.

The Genomic Aftermath of Hybridization in the Opportunistic Pathogen Candida metapsilosis.

Pryszcz LP, Németh T, Saus E, Ksiezopolska E, Hegedűsová E, Nosek J, Wolfe KH, Gacser A, Gabaldón T.

PLoS Genet. 2015 Oct 30;11(10):e1005626. doi: 10.1371/journal.pgen.1005626. eCollection 2015 Oct.

8.

Molecular signatures of plastic phenotypes in two eusocial insect species with simple societies.

Patalano S, Vlasova A, Wyatt C, Ewels P, Camara F, Ferreira PG, Asher CL, Jurkowski TP, Segonds-Pichon A, Bachman M, González-Navarrete I, Minoche AE, Krueger F, Lowy E, Marcet-Houben M, Rodriguez-Ales JL, Nascimento FS, Balasubramanian S, Gabaldon T, Tarver JE, Andrews S, Himmelbauer H, Hughes WO, Guigó R, Reik W, Sumner S.

Proc Natl Acad Sci U S A. 2015 Nov 10;112(45):13970-5. doi: 10.1073/pnas.1515937112. Epub 2015 Oct 19.

9.

Interactions between Closely Related Bacterial Strains Are Revealed by Deep Transcriptome Sequencing.

González-Torres P, Pryszcz LP, Santos F, Martínez-García M, Gabaldón T, Antón J.

Appl Environ Microbiol. 2015 Dec 15;81(24):8445-56. doi: 10.1128/AEM.02690-15. Epub 2015 Oct 2.

PMID:
26431969
10.

Beyond the Whole-Genome Duplication: Phylogenetic Evidence for an Ancient Interspecies Hybridization in the Baker's Yeast Lineage.

Marcet-Houben M, Gabaldón T.

PLoS Biol. 2015 Aug 7;13(8):e1002220. doi: 10.1371/journal.pbio.1002220. eCollection 2015 Aug.

11.

Corrigendum: Differential gene retention as an evolutionary mechanism to generate biodiversity and adaptation in yeasts.

Morel G, Sterck L, Swennen D, Marcet-Houben M, Onesime D, Levasseur A, Jacques N, Mallet S, Couloux A, Labadie K, Amselem J, Beckerich JM, Henrissat B, Van de Peer Y, Wincker P, Souciet JL, Gabaldón T, Tinsley CR, Casaregola S.

Sci Rep. 2015 Jul 30;5:12596. doi: 10.1038/srep12596. No abstract available.

12.

Evolution of selenophosphate synthetases: emergence and relocation of function through independent duplications and recurrent subfunctionalization.

Mariotti M, Santesmasses D, Capella-Gutierrez S, Mateo A, Arnan C, Johnson R, D'Aniello S, Yim SH, Gladyshev VN, Serras F, Corominas M, Gabaldón T, Guigó R.

Genome Res. 2015 Sep;25(9):1256-67. doi: 10.1101/gr.190538.115. Epub 2015 Jul 20.

13.

Quest for Orthologs Entails Quest for Tree of Life: In Search of the Gene Stream.

Boeckmann B, Marcet-Houben M, Rees JA, Forslund K, Huerta-Cepas J, Muffato M, Yilmaz P, Xenarios I, Bork P, Lewis SE, Gabaldón T; Quest for Orthologs Species Tree Working Group.

Genome Biol Evol. 2015 Jul 1;7(7):1988-99. doi: 10.1093/gbe/evv121.

14.

Differential gene retention as an evolutionary mechanism to generate biodiversity and adaptation in yeasts.

Morel G, Sterck L, Swennen D, Marcet-Houben M, Onesime D, Levasseur A, Jacques N, Mallet S, Couloux A, Labadie K, Amselem J, Beckerich JM, Henrissat B, Van de Peer Y, Wincker P, Souciet JL, Gabaldón T, Tinsley CR, Casaregola S.

Sci Rep. 2015 Jun 25;5:11571. doi: 10.1038/srep11571. Erratum in: Sci Rep. 2015;5:12596.

15.

Sex and parasites: genomic and transcriptomic analysis of Microbotryum lychnidis-dioicae, the biotrophic and plant-castrating anther smut fungus.

Perlin MH, Amselem J, Fontanillas E, Toh SS, Chen Z, Goldberg J, Duplessis S, Henrissat B, Young S, Zeng Q, Aguileta G, Petit E, Badouin H, Andrews J, Razeeq D, Gabaldón T, Quesneville H, Giraud T, Hood ME, Schultz DJ, Cuomo CA.

BMC Genomics. 2015 Jun 16;16:461. doi: 10.1186/s12864-015-1660-8.

16.

The Solanum commersonii Genome Sequence Provides Insights into Adaptation to Stress Conditions and Genome Evolution of Wild Potato Relatives.

Aversano R, Contaldi F, Ercolano MR, Grosso V, Iorizzo M, Tatino F, Xumerle L, Dal Molin A, Avanzato C, Ferrarini A, Delledonne M, Sanseverino W, Cigliano RA, Capella-Gutierrez S, Gabaldón T, Frusciante L, Bradeen JM, Carputo D.

Plant Cell. 2015 Apr;27(4):954-68. doi: 10.1105/tpc.114.135954. Epub 2015 Apr 14.

PMID:
25873387
17.

Origin and evolution of metabolic sub-cellular compartmentalization in eukaryotes.

Gabaldón T, Pittis AA.

Biochimie. 2015 Dec;119:262-8. doi: 10.1016/j.biochi.2015.03.021. Epub 2015 Apr 11.

18.

Metabolic gene clusters encoding the enzymes of two branches of the 3-oxoadipate pathway in the pathogenic yeast Candida albicans.

Gérecová G, Neboháčová M, Zeman I, Pryszcz LP, Tomáška Ľ, Gabaldón T, Nosek J.

FEMS Yeast Res. 2015 May;15(3). pii: fov006. doi: 10.1093/femsyr/fov006. Epub 2015 Mar 4.

PMID:
25743787
19.

Origin, diversification and substrate specificity in the family of NCS1/FUR transporters.

Krypotou E, Evangelidis T, Bobonis J, Pittis AA, Gabaldón T, Scazzocchio C, Mikros E, Diallinas G.

Mol Microbiol. 2015 Jun;96(5):927-50. doi: 10.1111/mmi.12982. Epub 2015 Apr 7.

PMID:
25712422
20.

Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs.

Green RE, Braun EL, Armstrong J, Earl D, Nguyen N, Hickey G, Vandewege MW, St John JA, Capella-Gutiérrez S, Castoe TA, Kern C, Fujita MK, Opazo JC, Jurka J, Kojima KK, Caballero J, Hubley RM, Smit AF, Platt RN, Lavoie CA, Ramakodi MP, Finger JW Jr, Suh A, Isberg SR, Miles L, Chong AY, Jaratlerdsiri W, Gongora J, Moran C, Iriarte A, McCormack J, Burgess SC, Edwards SV, Lyons E, Williams C, Breen M, Howard JT, Gresham CR, Peterson DG, Schmitz J, Pollock DD, Haussler D, Triplett EW, Zhang G, Irie N, Jarvis ED, Brochu CA, Schmidt CJ, McCarthy FM, Faircloth BC, Hoffmann FG, Glenn TC, Gabaldón T, Paten B, Ray DA.

Science. 2014 Dec 12;346(6215):1254449. doi: 10.1126/science.1254449. Epub 2014 Dec 11.

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