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Results: 1 to 20 of 23

1.

Targeting molecular networks for drug research.

Pinto JP, Machado RS, Xavier JM, Futschik ME.

Front Genet. 2014 Jun 4;5:160. doi: 10.3389/fgene.2014.00160. eCollection 2014. Review.

PMID:
24926314
[PubMed]
Free PMC Article
2.

StemCellNet: an interactive platform for network-oriented investigations in stem cell biology.

Pinto JP, Reddy Kalathur RK, Machado RS, Xavier JM, Bragança J, Futschik ME.

Nucleic Acids Res. 2014 Jul;42(Web Server issue):W154-60. doi: 10.1093/nar/gku455. Epub 2014 May 22.

PMID:
24852251
[PubMed - in process]
Free Article
3.

UniHI 7: an enhanced database for retrieval and interactive analysis of human molecular interaction networks.

Kalathur RK, Pinto JP, Hernández-Prieto MA, Machado RS, Almeida D, Chaurasia G, Futschik ME.

Nucleic Acids Res. 2014 Jan;42(Database issue):D408-14. doi: 10.1093/nar/gkt1100. Epub 2013 Nov 8.

PMID:
24214987
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Dynamic circadian protein-protein interaction networks predict temporal organization of cellular functions.

Wallach T, Schellenberg K, Maier B, Kalathur RK, Porras P, Wanker EE, Futschik ME, Kramer A.

PLoS Genet. 2013 Mar;9(3):e1003398. doi: 10.1371/journal.pgen.1003398. Epub 2013 Mar 28.

PMID:
23555304
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Iron deprivation in Synechocystis: inference of pathways, non-coding RNAs, and regulatory elements from comprehensive expression profiling.

Hernández-Prieto MA, Schön V, Georg J, Barreira L, Varela J, Hess WR, Futschik ME.

G3 (Bethesda). 2012 Dec;2(12):1475-95. doi: 10.1534/g3.112.003863. Epub 2012 Dec 1.

PMID:
23275872
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

CyanoEXpress: A web database for exploration and visualisation of the integrated transcriptome of cyanobacterium Synechocystis sp. PCC6803.

Hernandez-Prieto MA, Futschik ME.

Bioinformation. 2012;8(13):634-8. doi: 10.6026/97320630008634. Epub 2012 Jul 6.

PMID:
22829745
[PubMed]
Free PMC Article
7.

Huntington's disease and its therapeutic target genes: a global functional profile based on the HD Research Crossroads database.

Kalathur RK, Hernández-Prieto MA, Futschik ME.

BMC Neurol. 2012 Jun 28;12:47. doi: 10.1186/1471-2377-12-47.

PMID:
22741533
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Comparison and consolidation of microarray data sets of human tissue expression.

Russ J, Futschik ME.

BMC Genomics. 2010 May 14;11:305. doi: 10.1186/1471-2164-11-305.

PMID:
20465848
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Choreography of the transcriptome, photophysiology, and cell cycle of a minimal photoautotroph, prochlorococcus.

Zinser ER, Lindell D, Johnson ZI, Futschik ME, Steglich C, Coleman ML, Wright MA, Rector T, Steen R, McNulty N, Thompson LR, Chisholm SW.

PLoS One. 2009;4(4):e5135. doi: 10.1371/journal.pone.0005135. Epub 2009 Apr 8.

PMID:
19352512
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Tight regulation of unstructured proteins: from transcript synthesis to protein degradation.

Gsponer J, Futschik ME, Teichmann SA, Babu MM.

Science. 2008 Nov 28;322(5906):1365-8. doi: 10.1126/science.1163581.

PMID:
19039133
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

UniHI 4: new tools for query, analysis and visualization of the human protein-protein interactome.

Chaurasia G, Malhotra S, Russ J, Schnoegl S, Hänig C, Wanker EE, Futschik ME.

Nucleic Acids Res. 2009 Jan;37(Database issue):D657-60. doi: 10.1093/nar/gkn841. Epub 2008 Nov 4.

PMID:
18984619
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

The challenge of regulation in a minimal photoautotroph: non-coding RNAs in Prochlorococcus.

Steglich C, Futschik ME, Lindell D, Voss B, Chisholm SW, Hess WR.

PLoS Genet. 2008 Aug 29;4(8):e1000173. doi: 10.1371/journal.pgen.1000173. Erratum in: PLoS Genet. 2008 Nov;4(11):. doi:10.1371/annotation/411b74ae-c4ce-43c9-bdd2-60c2bf60e672.

PMID:
18769676
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Graph-theoretical comparison reveals structural divergence of human protein interaction networks.

Futschik ME, Tschaut A, Chaurasia G, Herzel H.

Genome Inform. 2007;18:141-51.

PMID:
18546482
[PubMed - indexed for MEDLINE]
14.

Are we overestimating the number of cell-cycling genes? The impact of background models on time-series analysis.

Futschik ME, Herzel H.

Bioinformatics. 2008 Apr 15;24(8):1063-9. doi: 10.1093/bioinformatics/btn072. Epub 2008 Feb 29.

PMID:
18310054
[PubMed - indexed for MEDLINE]
Free Article
15.

Genome-wide expression dynamics of a marine virus and host reveal features of co-evolution.

Lindell D, Jaffe JD, Coleman ML, Futschik ME, Axmann IM, Rector T, Kettler G, Sullivan MB, Steen R, Hess WR, Church GM, Chisholm SW.

Nature. 2007 Sep 6;449(7158):83-6.

PMID:
17805294
[PubMed - indexed for MEDLINE]
16.

Systematic functional assessment of human protein-protein interaction maps.

Chaurasia G, Herzel H, Wanker EE, Futschik ME.

Genome Inform. 2006;17(1):36-45.

PMID:
17503354
[PubMed - indexed for MEDLINE]
17.

Comparison of human protein-protein interaction maps.

Futschik ME, Chaurasia G, Herzel H.

Bioinformatics. 2007 Mar 1;23(5):605-11. Epub 2007 Jan 19.

PMID:
17237052
[PubMed - indexed for MEDLINE]
Free Article
18.

UniHI: an entry gate to the human protein interactome.

Chaurasia G, Iqbal Y, Hänig C, Herzel H, Wanker EE, Futschik ME.

Nucleic Acids Res. 2007 Jan;35(Database issue):D590-4. Epub 2006 Dec 7.

PMID:
17158159
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Noise-robust soft clustering of gene expression time-course data.

Futschik ME, Carlisle B.

J Bioinform Comput Biol. 2005 Aug;3(4):965-88.

PMID:
16078370
[PubMed - indexed for MEDLINE]
20.

OLIN: optimized normalization, visualization and quality testing of two-channel microarray data.

Futschik ME, Crompton T.

Bioinformatics. 2005 Apr 15;21(8):1724-6. Epub 2004 Dec 7.

PMID:
15585527
[PubMed - indexed for MEDLINE]
Free Article

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