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Items: 1 to 20 of 31

1.

Extracellular Proteins: Novel Key Components of Metal Resistance in Cyanobacteria?

Giner-Lamia J, Pereira SB, Bovea-Marco M, Futschik ME, Tamagnini P, Oliveira P.

Front Microbiol. 2016 Jun 7;7:878. doi: 10.3389/fmicb.2016.00878. eCollection 2016.

2.

The Transcriptional Landscape of the Photosynthetic Model Cyanobacterium Synechocystis sp. PCC6803.

Hernández-Prieto MA, Semeniuk TA, Giner-Lamia J, Futschik ME.

Sci Rep. 2016 Feb 29;6:22168. doi: 10.1038/srep22168.

3.

Identification of novel biomarkers in chronic immune thrombocytopenia (ITP) by microarray-based serum protein profiling.

Bal G, Futschik ME, Hartl D, Ringel F, Kamhieh-Milz J, Sterzer V, Hoheisel JD, Alhamdani MS, Salama A.

Br J Haematol. 2016 Feb;172(4):602-15. doi: 10.1111/bjh.13861. Epub 2015 Dec 2.

PMID:
26628061
4.

Novel Human Embryonic Stem Cell Regulators Identified by Conserved and Distinct CpG Island Methylation State.

Pells S, Koutsouraki E, Morfopoulou S, Valencia-Cadavid S, Tomlinson SR, Kalathur R, Futschik ME, De Sousa PA.

PLoS One. 2015 Jul 7;10(7):e0131102. doi: 10.1371/journal.pone.0131102. eCollection 2015.

5.

StemChecker: a web-based tool to discover and explore stemness signatures in gene sets.

Pinto JP, Kalathur RK, Oliveira DV, Barata T, Machado RS, Machado S, Pacheco-Leyva I, Duarte I, Futschik ME.

Nucleic Acids Res. 2015 Jul 1;43(W1):W72-7. doi: 10.1093/nar/gkv529. Epub 2015 May 24.

6.

Systematic interaction network filtering identifies CRMP1 as a novel suppressor of huntingtin misfolding and neurotoxicity.

Stroedicke M, Bounab Y, Strempel N, Klockmeier K, Yigit S, Friedrich RP, Chaurasia G, Li S, Hesse F, Riechers SP, Russ J, Nicoletti C, Boeddrich A, Wiglenda T, Haenig C, Schnoegl S, Fournier D, Graham RK, Hayden MR, Sigrist S, Bates GP, Priller J, Andrade-Navarro MA, Futschik ME, Wanker EE.

Genome Res. 2015 May;25(5):701-13. doi: 10.1101/gr.182444.114.

7.

The unfolded protein response and its potential role in Huntington's disease elucidated by a systems biology approach.

Kalathur RK, Giner-Lamia J, Machado S, Barata T, Ayasolla KR, Futschik ME.

Version 2. F1000Res. 2015 May 1 [revised 2016 Mar 2];4:103. doi: 10.12688/f1000research.6358.2. eCollection 2015.

8.

Toward a systems-level understanding of gene regulatory, protein interaction, and metabolic networks in cyanobacteria.

Hernández-Prieto MA, Semeniuk TA, Futschik ME.

Front Genet. 2014 Jul 2;5:191. doi: 10.3389/fgene.2014.00191. eCollection 2014. Review.

9.

Targeting molecular networks for drug research.

Pinto JP, Machado RS, Xavier JM, Futschik ME.

Front Genet. 2014 Jun 4;5:160. doi: 10.3389/fgene.2014.00160. eCollection 2014. Review.

10.

StemCellNet: an interactive platform for network-oriented investigations in stem cell biology.

Pinto JP, Reddy Kalathur RK, Machado RS, Xavier JM, Bragança J, Futschik ME.

Nucleic Acids Res. 2014 Jul;42(Web Server issue):W154-60. doi: 10.1093/nar/gku455. Epub 2014 May 22.

11.

UniHI 7: an enhanced database for retrieval and interactive analysis of human molecular interaction networks.

Kalathur RK, Pinto JP, Hernández-Prieto MA, Machado RS, Almeida D, Chaurasia G, Futschik ME.

Nucleic Acids Res. 2014 Jan;42(Database issue):D408-14. doi: 10.1093/nar/gkt1100. Epub 2013 Nov 8.

12.

Dynamic circadian protein-protein interaction networks predict temporal organization of cellular functions.

Wallach T, Schellenberg K, Maier B, Kalathur RK, Porras P, Wanker EE, Futschik ME, Kramer A.

PLoS Genet. 2013 Mar;9(3):e1003398. doi: 10.1371/journal.pgen.1003398. Epub 2013 Mar 28.

13.

Iron deprivation in Synechocystis: inference of pathways, non-coding RNAs, and regulatory elements from comprehensive expression profiling.

Hernández-Prieto MA, Schön V, Georg J, Barreira L, Varela J, Hess WR, Futschik ME.

G3 (Bethesda). 2012 Dec;2(12):1475-95. doi: 10.1534/g3.112.003863. Epub 2012 Dec 1.

14.

CyanoEXpress: A web database for exploration and visualisation of the integrated transcriptome of cyanobacterium Synechocystis sp. PCC6803.

Hernandez-Prieto MA, Futschik ME.

Bioinformation. 2012;8(13):634-8. doi: 10.6026/97320630008634. Epub 2012 Jul 6.

15.

Huntington's disease and its therapeutic target genes: a global functional profile based on the HD Research Crossroads database.

Kalathur RK, Hernández-Prieto MA, Futschik ME.

BMC Neurol. 2012 Jun 28;12:47. doi: 10.1186/1471-2377-12-47.

16.

Comparison and consolidation of microarray data sets of human tissue expression.

Russ J, Futschik ME.

BMC Genomics. 2010 May 14;11:305. doi: 10.1186/1471-2164-11-305.

17.

Choreography of the transcriptome, photophysiology, and cell cycle of a minimal photoautotroph, prochlorococcus.

Zinser ER, Lindell D, Johnson ZI, Futschik ME, Steglich C, Coleman ML, Wright MA, Rector T, Steen R, McNulty N, Thompson LR, Chisholm SW.

PLoS One. 2009;4(4):e5135. doi: 10.1371/journal.pone.0005135. Epub 2009 Apr 8.

18.

Tight regulation of unstructured proteins: from transcript synthesis to protein degradation.

Gsponer J, Futschik ME, Teichmann SA, Babu MM.

Science. 2008 Nov 28;322(5906):1365-8. doi: 10.1126/science.1163581.

19.

UniHI 4: new tools for query, analysis and visualization of the human protein-protein interactome.

Chaurasia G, Malhotra S, Russ J, Schnoegl S, Hänig C, Wanker EE, Futschik ME.

Nucleic Acids Res. 2009 Jan;37(Database issue):D657-60. doi: 10.1093/nar/gkn841. Epub 2008 Nov 4.

20.

The challenge of regulation in a minimal photoautotroph: non-coding RNAs in Prochlorococcus.

Steglich C, Futschik ME, Lindell D, Voss B, Chisholm SW, Hess WR.

PLoS Genet. 2008 Aug 29;4(8):e1000173. doi: 10.1371/journal.pgen.1000173. Erratum in: PLoS Genet. 2008 Nov;4(11):. doi:10.1371/annotation/411b74ae-c4ce-43c9-bdd2-60c2bf60e672.

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