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Results: 1 to 20 of 61

1.

Using Whole Genome Analysis to Examine Recombination across Diverse Sequence Types of Staphylococcus aureus.

Driebe EM, Sahl JW, Roe C, Bowers JR, Schupp JM, Gillece JD, Kelley E, Price LB, Pearson TR, Hepp CM, Brzoska PM, Cummings CA, Furtado MR, Andersen PS, Stegger M, Engelthaler DM, Keim PS.

PLoS One. 2015 Jul 10;10(7):e0130955. doi: 10.1371/journal.pone.0130955. eCollection 2015.

2.

Genomic characterization of Salmonella Cerro ST367, an emerging Salmonella subtype in cattle in the United States.

Rodriguez-Rivera LD, Moreno Switt AI, Degoricija L, Fang R, Cummings CA, Furtado MR, Wiedmann M, den Bakker HC.

BMC Genomics. 2014 Jun 4;15:427. doi: 10.1186/1471-2164-15-427.

3.

Progress toward an efficient panel of SNPs for ancestry inference.

Kidd KK, Speed WC, Pakstis AJ, Furtado MR, Fang R, Madbouly A, Maiers M, Middha M, Friedlaender FR, Kidd JR.

Forensic Sci Int Genet. 2014 May;10:23-32. doi: 10.1016/j.fsigen.2014.01.002. Epub 2014 Jan 15.

4.

Haplotype structure and positive selection at TLR1.

Heffelfinger C, Pakstis AJ, Speed WC, Clark AP, Haigh E, Fang R, Furtado MR, Kidd KK, Snyder MP.

Eur J Hum Genet. 2014 Apr;22(4):551-7. doi: 10.1038/ejhg.2013.194. Epub 2013 Sep 4.

5.

Validation of the Applied Biosystems MicroSEQ real-time PCR system for detection of E. coli O157:H7 in food.

Wong LY, Cao Y, Balachandran P, Zoder P, Furtado MR, Petrauskene OV, Tebbs RS.

J AOAC Int. 2012 Sep-Oct;95(5):1495-504.

PMID:
23175985
6.

Comparative analysis of genome sequences covering the seven cronobacter species.

Joseph S, Desai P, Ji Y, Cummings CA, Shih R, Degoricija L, Rico A, Brzoska P, Hamby SE, Masood N, Hariri S, Sonbol H, Chuzhanova N, McClelland M, Furtado MR, Forsythe SJ.

PLoS One. 2012;7(11):e49455. doi: 10.1371/journal.pone.0049455. Epub 2012 Nov 16.

7.

Assuring the quality of next-generation sequencing in clinical laboratory practice.

Gargis AS, Kalman L, Berry MW, Bick DP, Dimmock DP, Hambuch T, Lu F, Lyon E, Voelkerding KV, Zehnbauer BA, Agarwala R, Bennett SF, Chen B, Chin EL, Compton JG, Das S, Farkas DH, Ferber MJ, Funke BH, Furtado MR, Ganova-Raeva LM, Geigenm├╝ller U, Gunselman SJ, Hegde MR, Johnson PL, Kasarskis A, Kulkarni S, Lenk T, Liu CS, Manion M, Manolio TA, Mardis ER, Merker JD, Rajeevan MS, Reese MG, Rehm HL, Simen BB, Yeakley JM, Zook JM, Lubin IM.

Nat Biotechnol. 2012 Nov;30(11):1033-6. doi: 10.1038/nbt.2403. No abstract available.

8.

Evaluation of applied biosystems MicroSEQ real-time PCR system for detection of Listeria spp. in food and environmental samples.

Petrauskene OV, Cao Y, Zoder P, Wong LY, Balachandran P, Furtado MR, Tebbs RS.

J AOAC Int. 2012 Jul-Aug;95(4):1074-83.

PMID:
22970575
9.

Identification and characterization of novel Salmonella mobile elements involved in the dissemination of genes linked to virulence and transmission.

Moreno Switt AI, den Bakker HC, Cummings CA, Rodriguez-Rivera LD, Govoni G, Raneiri ML, Degoricija L, Brown S, Hoelzer K, Peters JE, Bolchacova E, Furtado MR, Wiedmann M.

PLoS One. 2012;7(7):e41247. doi: 10.1371/journal.pone.0041247. Epub 2012 Jul 20.

10.

Mini-haplotypes as lineage informative SNPs and ancestry inference SNPs.

Pakstis AJ, Fang R, Furtado MR, Kidd JR, Kidd KK.

Eur J Hum Genet. 2012 Nov;20(11):1148-54. doi: 10.1038/ejhg.2012.69. Epub 2012 Apr 25.

11.

Expanding data and resources for forensic use of SNPs in individual identification.

Kidd KK, Kidd JR, Speed WC, Fang R, Furtado MR, Hyland FC, Pakstis AJ.

Forensic Sci Int Genet. 2012 Sep;6(5):646-52. doi: 10.1016/j.fsigen.2012.02.012. Epub 2012 Mar 22.

PMID:
22445421
12.

Rapid detection of Salmonella in pet food: design and evaluation of integrated methods based on real-time PCR detection.

Balachandran P, Friberg M, Vanlandingham V, Kozak K, Manolis A, Brevnov M, Crowley E, Bird P, Goins D, Furtado MR, Petrauskene OV, Tebbs RS, Charbonneau D.

J Food Prot. 2012 Feb;75(2):347-52. doi: 10.4315/0362-028X.JFP-11-210.

PMID:
22289596
13.

Dominance of multidrug resistant CC271 clones in macrolide-resistant streptococcus pneumoniae in Arizona.

Bowers JR, Driebe EM, Nibecker JL, Wojack BR, Sarovich DS, Wong AH, Brzoska PM, Hubert N, Knadler A, Watson LM, Wagner DM, Furtado MR, Saubolle M, Engelthaler DM, Keim PS.

BMC Microbiol. 2012 Jan 18;12:12. doi: 10.1186/1471-2180-12-12.

14.

A sample extraction method for faster, more sensitive PCR-based detection of pathogens in blood culture.

Regan JF, Furtado MR, Brevnov MG, Jordan JA.

J Mol Diagn. 2012 Mar-Apr;14(2):120-9. doi: 10.1016/j.jmoldx.2011.10.001. Epub 2012 Jan 11.

15.

Evaluation of applied biosystems MicroSeq real-time PCR system for detection of Listeria monocytogenes in food. Performance Tested Method 011002.

Tebbs RS, Balachandran P, Wong LY, Zoder P, Furtado MR, Petrauskene OV, Cao Y.

J AOAC Int. 2011 Sep-Oct;94(5):1481-9.

PMID:
22165012
16.

A whole-genome single nucleotide polymorphism-based approach to trace and identify outbreaks linked to a common Salmonella enterica subsp. enterica serovar Montevideo pulsed-field gel electrophoresis type.

Bakker HC, Switt AI, Cummings CA, Hoelzer K, Degoricija L, Rodriguez-Rivera LD, Wright EM, Fang R, Davis M, Root T, Schoonmaker-Bopp D, Musser KA, Villamil E, Waechter H, Kornstein L, Furtado MR, Wiedmann M.

Appl Environ Microbiol. 2011 Dec;77(24):8648-55. doi: 10.1128/AEM.06538-11. Epub 2011 Oct 14.

17.

Evaluation of applied biosystems MicroSEQ real-time PCR system for detection of Salmonella spp. in food.

Balachandran P, Cao Y, Wong L, Furtado MR, Petrauskene OV, Tebbs RS.

J AOAC Int. 2011 Jul-Aug;94(4):1106-16.

PMID:
21919345
18.

Genome sequencing reveals diversification of virulence factor content and possible host adaptation in distinct subpopulations of Salmonella enterica.

den Bakker HC, Moreno Switt AI, Govoni G, Cummings CA, Ranieri ML, Degoricija L, Hoelzer K, Rodriguez-Rivera LD, Brown S, Bolchacova E, Furtado MR, Wiedmann M.

BMC Genomics. 2011 Aug 22;12:425. doi: 10.1186/1471-2164-12-425.

19.

Design and validation of a novel multiplex real-time PCR assay for Vibrio pathogen detection.

Tebbs RS, Brzoska PM, Furtado MR, Petrauskene OV.

J Food Prot. 2011 Jun;74(6):939-48. doi: 10.4315/0362-028X.JFP-10-511.

PMID:
21669071
20.

Low dose radiation response curves, networks and pathways in human lymphoblastoid cells exposed from 1 to 10cGy of acute gamma radiation.

Wyrobek AJ, Manohar CF, Krishnan VV, Nelson DO, Furtado MR, Bhattacharya MS, Marchetti F, Coleman MA.

Mutat Res. 2011 Jun 17;722(2):119-30. doi: 10.1016/j.mrgentox.2011.03.002. Epub 2011 Apr 15.

PMID:
21497671
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