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Items: 13

1.

Overview of BioCreative II gene normalization.

Morgan AA, Lu Z, Wang X, Cohen AM, Fluck J, Ruch P, Divoli A, Fundel K, Leaman R, Hakenberg J, Sun C, Liu HH, Torres R, Krauthammer M, Lau WW, Liu H, Hsu CN, Schuemie M, Cohen KB, Hirschman L.

Genome Biol. 2008;9 Suppl 2:S3. doi: 10.1186/gb-2008-9-s2-s3. Epub 2008 Sep 1.

2.

Normalization strategies for mRNA expression data in cartilage research.

Fundel K, Haag J, Gebhard PM, Zimmer R, Aigner T.

Osteoarthritis Cartilage. 2008 Aug;16(8):947-55. doi: 10.1016/j.joca.2007.12.007. Epub 2008 Feb 6.

3.

Normalization and gene p-value estimation: issues in microarray data processing.

Fundel K, Küffner R, Aigner T, Zimmer R.

Bioinform Biol Insights. 2008 May 28;2:291-305.

4.

Activation of interleukin-1 signaling cascades in normal and osteoarthritic articular cartilage.

Fan Z, Söder S, Oehler S, Fundel K, Aigner T.

Am J Pathol. 2007 Sep;171(3):938-46. Epub 2007 Jul 19.

5.

Phenotyping of chondrocytes in vivo and in vitro using cDNA array technology.

Zien A, Gebhard PM, Fundel K, Aigner T.

Clin Orthop Relat Res. 2007 Jul;460:226-33.

PMID:
17327807
6.

RelEx--relation extraction using dependency parse trees.

Fundel K, Küffner R, Zimmer R.

Bioinformatics. 2007 Feb 1;23(3):365-71. Epub 2006 Dec 1.

7.

Large-scale gene expression profiling reveals major pathogenetic pathways of cartilage degeneration in osteoarthritis.

Aigner T, Fundel K, Saas J, Gebhard PM, Haag J, Weiss T, Zien A, Obermayr F, Zimmer R, Bartnik E.

Arthritis Rheum. 2006 Nov;54(11):3533-44.

8.

Gene and protein nomenclature in public databases.

Fundel K, Zimmer R.

BMC Bioinformatics. 2006 Aug 9;7:372.

9.

Reliable gene signatures for microarray classification: assessment of stability and performance.

Davis CA, Gerick F, Hintermair V, Friedel CC, Fundel K, Küffner R, Zimmer R.

Bioinformatics. 2006 Oct 1;22(19):2356-63. Epub 2006 Jul 31.

10.

Web servicing the biological office.

Szugat M, Güttler D, Fundel K, Sohler F, Zimmer R.

Bioinformatics. 2005 Sep 1;21 Suppl 2:ii268-9.

11.
12.

A simple approach for protein name identification: prospects and limits.

Fundel K, Güttler D, Zimmer R, Apostolakis J.

BMC Bioinformatics. 2005;6 Suppl 1:S15. Epub 2005 May 24.

13.

ProMiner: rule-based protein and gene entity recognition.

Hanisch D, Fundel K, Mevissen HT, Zimmer R, Fluck J.

BMC Bioinformatics. 2005;6 Suppl 1:S14. Epub 2005 May 24.

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