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Results: 13

1.

Overview of BioCreative II gene normalization.

Morgan AA, Lu Z, Wang X, Cohen AM, Fluck J, Ruch P, Divoli A, Fundel K, Leaman R, Hakenberg J, Sun C, Liu HH, Torres R, Krauthammer M, Lau WW, Liu H, Hsu CN, Schuemie M, Cohen KB, Hirschman L.

Genome Biol. 2008;9 Suppl 2:S3. doi: 10.1186/gb-2008-9-s2-s3. Epub 2008 Sep 1.

PMID:
18834494
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Normalization strategies for mRNA expression data in cartilage research.

Fundel K, Haag J, Gebhard PM, Zimmer R, Aigner T.

Osteoarthritis Cartilage. 2008 Aug;16(8):947-55. doi: 10.1016/j.joca.2007.12.007. Epub 2008 Feb 6.

PMID:
18258458
[PubMed - indexed for MEDLINE]
Free Article
3.

Normalization and gene p-value estimation: issues in microarray data processing.

Fundel K, Küffner R, Aigner T, Zimmer R.

Bioinform Biol Insights. 2008 May 28;2:291-305.

PMID:
19812783
[PubMed]
Free PMC Article
4.

Activation of interleukin-1 signaling cascades in normal and osteoarthritic articular cartilage.

Fan Z, Söder S, Oehler S, Fundel K, Aigner T.

Am J Pathol. 2007 Sep;171(3):938-46. Epub 2007 Jul 19.

PMID:
17640966
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Phenotyping of chondrocytes in vivo and in vitro using cDNA array technology.

Zien A, Gebhard PM, Fundel K, Aigner T.

Clin Orthop Relat Res. 2007 Jul;460:226-33.

PMID:
17327807
[PubMed - indexed for MEDLINE]
6.

RelEx--relation extraction using dependency parse trees.

Fundel K, Küffner R, Zimmer R.

Bioinformatics. 2007 Feb 1;23(3):365-71. Epub 2006 Dec 1.

PMID:
17142812
[PubMed - indexed for MEDLINE]
Free Article
7.

Large-scale gene expression profiling reveals major pathogenetic pathways of cartilage degeneration in osteoarthritis.

Aigner T, Fundel K, Saas J, Gebhard PM, Haag J, Weiss T, Zien A, Obermayr F, Zimmer R, Bartnik E.

Arthritis Rheum. 2006 Nov;54(11):3533-44.

PMID:
17075858
[PubMed - indexed for MEDLINE]
Free Article
8.

Gene and protein nomenclature in public databases.

Fundel K, Zimmer R.

BMC Bioinformatics. 2006 Aug 9;7:372.

PMID:
16899134
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Reliable gene signatures for microarray classification: assessment of stability and performance.

Davis CA, Gerick F, Hintermair V, Friedel CC, Fundel K, Küffner R, Zimmer R.

Bioinformatics. 2006 Oct 1;22(19):2356-63. Epub 2006 Jul 31.

PMID:
16882647
[PubMed - indexed for MEDLINE]
Free Article
10.

Web servicing the biological office.

Szugat M, Güttler D, Fundel K, Sohler F, Zimmer R.

Bioinformatics. 2005 Sep 1;21 Suppl 2:ii268-9.

PMID:
16204117
[PubMed - indexed for MEDLINE]
Free Article
11.

Expert knowledge without the expert: integrated analysis of gene expression and literature to derive active functional contexts.

Küffner R, Fundel K, Zimmer R.

Bioinformatics. 2005 Sep 1;21 Suppl 2:ii259-67.

PMID:
16204115
[PubMed - indexed for MEDLINE]
Free Article
12.

A simple approach for protein name identification: prospects and limits.

Fundel K, Güttler D, Zimmer R, Apostolakis J.

BMC Bioinformatics. 2005;6 Suppl 1:S15. Epub 2005 May 24.

PMID:
15960827
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

ProMiner: rule-based protein and gene entity recognition.

Hanisch D, Fundel K, Mevissen HT, Zimmer R, Fluck J.

BMC Bioinformatics. 2005;6 Suppl 1:S14. Epub 2005 May 24.

PMID:
15960826
[PubMed - indexed for MEDLINE]
Free PMC Article

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