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Results: 1 to 20 of 95

1.

Structural elucidation of the cyclization mechanism of α-1,6-glucan by Bacillus circulans T-3040 cycloisomaltooligosaccharide glucanotransferase.

Suzuki N, Fujimoto Z, Kim YM, Momma M, Kishine N, Suzuki R, Suzuki S, Kitamura S, Kobayashi M, Kimura A, Funane K.

J Biol Chem. 2014 Apr 25;289(17):12040-51. doi: 10.1074/jbc.M114.547992. Epub 2014 Mar 10.

PMID:
24616103
[PubMed - indexed for MEDLINE]
2.

Structural basis of the divergent oxygenation reactions catalyzed by the rieske nonheme iron oxygenase carbazole 1,9a-dioxygenase.

Inoue K, Usami Y, Ashikawa Y, Noguchi H, Umeda T, Yamagami-Ashikawa A, Horisaki T, Uchimura H, Terada T, Nakamura S, Shimizu K, Habe H, Yamane H, Fujimoto Z, Nojiri H.

Appl Environ Microbiol. 2014 May;80(9):2821-32. doi: 10.1128/AEM.04000-13. Epub 2014 Feb 28.

PMID:
24584240
[PubMed - in process]
3.

Niemann-Pick type C2 protein mediating chemical communication in the worker ant.

Ishida Y, Tsuchiya W, Fujii T, Fujimoto Z, Miyazawa M, Ishibashi J, Matsuyama S, Ishikawa Y, Yamazaki T.

Proc Natl Acad Sci U S A. 2014 Mar 11;111(10):3847-52. doi: 10.1073/pnas.1323928111. Epub 2014 Feb 24.

PMID:
24567405
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Crystal structure and characterization of the glycoside hydrolase family 62 α-L-arabinofuranosidase from Streptomyces coelicolor.

Maehara T, Fujimoto Z, Ichinose H, Michikawa M, Harazono K, Kaneko S.

J Biol Chem. 2014 Mar 14;289(11):7962-72. doi: 10.1074/jbc.M113.540542. Epub 2014 Jan 30.

PMID:
24482228
[PubMed - indexed for MEDLINE]
5.

Evidence for cycloisomaltooligosaccharide production from starch by Bacillus circulans T-3040.

Funane K, Ichinose H, Araki M, Suzuki R, Kimura K, Fujimoto Z, Kobayashi M, Kimura A.

Appl Microbiol Biotechnol. 2014 May;98(9):3947-54. doi: 10.1007/s00253-014-5515-z. Epub 2014 Jan 26.

PMID:
24463763
[PubMed - in process]
6.

Crystallization and preliminary X-ray diffraction studies of the reduced form of the terminal oxygenase component of the Rieske nonhaem iron oxygenase system carbazole 1,9a-dioxygenase.

Matsuzawa J, Umeda T, Aikawa H, Suzuki C, Fujimoto Z, Okada K, Yamane H, Nojiri H.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Nov;69(Pt 11):1284-7. doi: 10.1107/S1744309113026754. Epub 2013 Oct 30.

PMID:
24192370
[PubMed - indexed for MEDLINE]
7.

Crystallization and preliminary X-ray crystallographic analysis of cycloisomaltooligosaccharide glucanotransferase from Bacillus circulans T-3040.

Suzuki N, Kim YM, Momma M, Fujimoto Z, Kobayashi M, Kimura A, Funane K.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Aug;69(Pt 8):946-9. doi: 10.1107/S174430911301991X. Epub 2013 Jul 27.

PMID:
23908050
[PubMed - indexed for MEDLINE]
8.

Structure and function of carbohydrate-binding module families 13 and 42 of glycoside hydrolases, comprising a β-trefoil fold.

Fujimoto Z.

Biosci Biotechnol Biochem. 2013;77(7):1363-71. Epub 2013 Jul 7. Review.

PMID:
23832347
[PubMed - indexed for MEDLINE]
Free Article
9.

Expression, crystallization and preliminary X-ray analysis of rice L-galactose dehydrogenase.

Momma M, Fujimoto Z.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Jul;69(Pt 7):809-11. doi: 10.1107/S1744309113016692. Epub 2013 Jun 30.

PMID:
23832214
[PubMed - indexed for MEDLINE]
10.

The structure of a Streptomyces avermitilis α-L-rhamnosidase reveals a novel carbohydrate-binding module CBM67 within the six-domain arrangement.

Fujimoto Z, Jackson A, Michikawa M, Maehara T, Momma M, Henrissat B, Gilbert HJ, Kaneko S.

J Biol Chem. 2013 Apr 26;288(17):12376-85. doi: 10.1074/jbc.M113.460097. Epub 2013 Mar 13.

PMID:
23486481
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Crystal structure of silkworm Bombyx mori JHBP in complex with 2-methyl-2,4-pentanediol: plasticity of JH-binding pocket and ligand-induced conformational change of the second cavity in JHBP.

Fujimoto Z, Suzuki R, Shiotsuki T, Tsuchiya W, Tase A, Momma M, Yamazaki T.

PLoS One. 2013;8(2):e56261. doi: 10.1371/journal.pone.0056261. Epub 2013 Feb 20.

PMID:
23437107
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Characterization of an α-L-Rhamnosidase from Streptomyces avermitilis.

Ichinose H, Fujimoto Z, Kaneko S.

Biosci Biotechnol Biochem. 2013;77(1):213-6. Epub 2013 Jan 7.

PMID:
23291751
[PubMed - indexed for MEDLINE]
Free Article
13.

Studies on crenarchaeal tyrosylation accuracy with mutational analyses of tyrosyl-tRNA synthetase and tyrosine tRNA from Aeropyrum pernix.

Iwaki J, Endo K, Ichikawa T, Suzuki R, Fujimoto Z, Momma M, Kuno A, Nishimura S, Hasegawa T.

J Biochem. 2012 Dec;152(6):539-48. doi: 10.1093/jb/mvs114. Epub 2012 Sep 29.

PMID:
23024156
[PubMed - indexed for MEDLINE]
14.

Interdomain disulfide bridge in the rice granule bound starch synthase I catalytic domain as elucidated by X-ray structure analysis.

Momma M, Fujimoto Z.

Biosci Biotechnol Biochem. 2012;76(8):1591-5. Epub 2012 Aug 7.

PMID:
22878205
[PubMed - indexed for MEDLINE]
Free Article
15.

Bacteroides thetaiotaomicron VPI-5482 glycoside hydrolase family 66 homolog catalyzes dextranolytic and cyclization reactions.

Kim YM, Yamamoto E, Kang MS, Nakai H, Saburi W, Okuyama M, Mori H, Funane K, Momma M, Fujimoto Z, Kobayashi M, Kim D, Kimura A.

FEBS J. 2012 Sep;279(17):3185-91. doi: 10.1111/j.1742-4658.2012.08698.x. Epub 2012 Aug 2.

PMID:
22776355
[PubMed - indexed for MEDLINE]
16.

Structural insight into the substrate- and dioxygen-binding manner in the catalytic cycle of rieske nonheme iron oxygenase system, carbazole 1,9a-dioxygenase.

Ashikawa Y, Fujimoto Z, Usami Y, Inoue K, Noguchi H, Yamane H, Nojiri H.

BMC Struct Biol. 2012 Jun 24;12:15. doi: 10.1186/1472-6807-12-15.

PMID:
22727022
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Biochemical characterization of a novel cycloisomaltooligosaccharide glucanotransferase from Paenibacillus sp. 598K.

Suzuki R, Terasawa K, Kimura K, Fujimoto Z, Momma M, Kobayashi M, Kimura A, Funane K.

Biochim Biophys Acta. 2012 Jul;1824(7):919-24. doi: 10.1016/j.bbapap.2012.04.001. Epub 2012 Apr 14.

PMID:
22542750
[PubMed - indexed for MEDLINE]
Free Article
18.

Novel dextranase catalyzing cycloisomaltooligosaccharide formation and identification of catalytic amino acids and their functions using chemical rescue approach.

Kim YM, Kiso Y, Muraki T, Kang MS, Nakai H, Saburi W, Lang W, Kang HK, Okuyama M, Mori H, Suzuki R, Funane K, Suzuki N, Momma M, Fujimoto Z, Oguma T, Kobayashi M, Kim D, Kimura A.

J Biol Chem. 2012 Jun 8;287(24):19927-35. doi: 10.1074/jbc.M111.339036. Epub 2012 Mar 29.

PMID:
22461618
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Structural and biochemical characterization of glycoside hydrolase family 79 β-glucuronidase from Acidobacterium capsulatum.

Michikawa M, Ichinose H, Momma M, Biely P, Jongkees S, Yoshida M, Kotake T, Tsumuraya Y, Withers SG, Fujimoto Z, Kaneko S.

J Biol Chem. 2012 Apr 20;287(17):14069-77. doi: 10.1074/jbc.M112.346288. Epub 2012 Feb 24.

PMID:
22367201
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Structural mechanism of JH delivery in hemolymph by JHBP of silkworm, Bombyx mori.

Suzuki R, Fujimoto Z, Shiotsuki T, Tsuchiya W, Momma M, Tase A, Miyazawa M, Yamazaki T.

Sci Rep. 2011;1:133. doi: 10.1038/srep00133. Epub 2011 Oct 28.

PMID:
22355650
[PubMed - indexed for MEDLINE]
Free PMC Article

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