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Items: 1 to 20 of 102

1.

Optimized inhibition assays reveal different inhibitory responses of hydroxylamine oxidoreductases from beta- and gamma-proteobacterial ammonium-oxidizing bacteria.

Nishigaya Y, Fujimoto Z, Yamazaki T.

Biochem Biophys Res Commun. 2016 Jul 29;476(3):127-33. doi: 10.1016/j.bbrc.2016.05.041. Epub 2016 May 10.

PMID:
27173879
2.

The Sorghum Gene for Leaf Color Changes upon Wounding (P) Encodes a Flavanone 4-Reductase in the 3-Deoxyanthocyanidin Biosynthesis Pathway.

Kawahigashi H, Kasuga S, Sawada Y, Yonemaru J, Ando T, Kanamori H, Wu J, Mizuno H, Momma M, Fujimoto Z, Hirai MY, Matsumoto T.

G3 (Bethesda). 2016 May 3;6(5):1439-47. doi: 10.1534/g3.115.026104.

3.

Crystal structure of thermophilic dextranase from Thermoanaerobacter pseudethanolicus.

Suzuki N, Kishine N, Fujimoto Z, Sakurai M, Momma M, Ko JA, Nam SH, Kimura A, Kim YM.

J Biochem. 2016 Mar;159(3):331-9. doi: 10.1093/jb/mvv104. Epub 2015 Oct 21.

PMID:
26494689
4.

Molecular engineering of cycloisomaltooligosaccharide glucanotransferase from Bacillus circulans T-3040: structural determinants for the reaction product size and reactivity.

Suzuki R, Suzuki N, Fujimoto Z, Momma M, Kimura K, Kitamura S, Kimura A, Funane K.

Biochem J. 2015 Apr 15;467(2):259-70. doi: 10.1042/BJ20140860.

PMID:
25649478
5.

Crystallization and preliminary X-ray diffraction analyses of the redox-controlled complex of terminal oxygenase and ferredoxin components in the Rieske nonhaem iron oxygenase carbazole 1,9a-dioxygenase.

Matsuzawa J, Aikawa H, Umeda T, Ashikawa Y, Suzuki-Minakuchi C, Kawano Y, Fujimoto Z, Okada K, Yamane H, Nojiri H.

Acta Crystallogr F Struct Biol Commun. 2014 Oct;70(Pt 10):1406-9. doi: 10.1107/S2053230X14018779. Epub 2014 Sep 25.

6.

Lectin structures: classification based on the 3-D structures.

Fujimoto Z, Tateno H, Hirabayashi J.

Methods Mol Biol. 2014;1200:579-606. doi: 10.1007/978-1-4939-1292-6_46. Review.

PMID:
25117265
7.

Basic procedure of x-ray crystallography for analysis of lectin-sugar interactions.

Fujimoto Z.

Methods Mol Biol. 2014;1200:481-90. doi: 10.1007/978-1-4939-1292-6_39. Review.

PMID:
25117258
8.

Structural elucidation of the cyclization mechanism of α-1,6-glucan by Bacillus circulans T-3040 cycloisomaltooligosaccharide glucanotransferase.

Suzuki N, Fujimoto Z, Kim YM, Momma M, Kishine N, Suzuki R, Suzuki S, Kitamura S, Kobayashi M, Kimura A, Funane K.

J Biol Chem. 2014 Apr 25;289(17):12040-51. doi: 10.1074/jbc.M114.547992. Epub 2014 Mar 10.

9.

Structural basis of the divergent oxygenation reactions catalyzed by the rieske nonheme iron oxygenase carbazole 1,9a-dioxygenase.

Inoue K, Usami Y, Ashikawa Y, Noguchi H, Umeda T, Yamagami-Ashikawa A, Horisaki T, Uchimura H, Terada T, Nakamura S, Shimizu K, Habe H, Yamane H, Fujimoto Z, Nojiri H.

Appl Environ Microbiol. 2014 May;80(9):2821-32. doi: 10.1128/AEM.04000-13. Epub 2014 Feb 28.

10.

Niemann-Pick type C2 protein mediating chemical communication in the worker ant.

Ishida Y, Tsuchiya W, Fujii T, Fujimoto Z, Miyazawa M, Ishibashi J, Matsuyama S, Ishikawa Y, Yamazaki T.

Proc Natl Acad Sci U S A. 2014 Mar 11;111(10):3847-52. doi: 10.1073/pnas.1323928111. Epub 2014 Feb 24.

11.

Crystal structure and characterization of the glycoside hydrolase family 62 α-L-arabinofuranosidase from Streptomyces coelicolor.

Maehara T, Fujimoto Z, Ichinose H, Michikawa M, Harazono K, Kaneko S.

J Biol Chem. 2014 Mar 14;289(11):7962-72. doi: 10.1074/jbc.M113.540542. Epub 2014 Jan 30.

12.

Evidence for cycloisomaltooligosaccharide production from starch by Bacillus circulans T-3040.

Funane K, Ichinose H, Araki M, Suzuki R, Kimura K, Fujimoto Z, Kobayashi M, Kimura A.

Appl Microbiol Biotechnol. 2014 May;98(9):3947-54. doi: 10.1007/s00253-014-5515-z. Epub 2014 Jan 26.

PMID:
24463763
13.

Crystallization and preliminary X-ray diffraction studies of the reduced form of the terminal oxygenase component of the Rieske nonhaem iron oxygenase system carbazole 1,9a-dioxygenase.

Matsuzawa J, Umeda T, Aikawa H, Suzuki C, Fujimoto Z, Okada K, Yamane H, Nojiri H.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Nov;69(Pt 11):1284-7. doi: 10.1107/S1744309113026754. Epub 2013 Oct 30.

14.

Crystallization and preliminary X-ray crystallographic analysis of cycloisomaltooligosaccharide glucanotransferase from Bacillus circulans T-3040.

Suzuki N, Kim YM, Momma M, Fujimoto Z, Kobayashi M, Kimura A, Funane K.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Aug;69(Pt 8):946-9. doi: 10.1107/S174430911301991X. Epub 2013 Jul 27.

15.
16.

Expression, crystallization and preliminary X-ray analysis of rice L-galactose dehydrogenase.

Momma M, Fujimoto Z.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Jul;69(Pt 7):809-11. doi: 10.1107/S1744309113016692. Epub 2013 Jun 30.

17.

The structure of a Streptomyces avermitilis α-L-rhamnosidase reveals a novel carbohydrate-binding module CBM67 within the six-domain arrangement.

Fujimoto Z, Jackson A, Michikawa M, Maehara T, Momma M, Henrissat B, Gilbert HJ, Kaneko S.

J Biol Chem. 2013 Apr 26;288(17):12376-85. doi: 10.1074/jbc.M113.460097. Epub 2013 Mar 13.

18.

Crystal structure of silkworm Bombyx mori JHBP in complex with 2-methyl-2,4-pentanediol: plasticity of JH-binding pocket and ligand-induced conformational change of the second cavity in JHBP.

Fujimoto Z, Suzuki R, Shiotsuki T, Tsuchiya W, Tase A, Momma M, Yamazaki T.

PLoS One. 2013;8(2):e56261. doi: 10.1371/journal.pone.0056261. Epub 2013 Feb 20.

19.

Characterization of an α-L-Rhamnosidase from Streptomyces avermitilis.

Ichinose H, Fujimoto Z, Kaneko S.

Biosci Biotechnol Biochem. 2013;77(1):213-6. Epub 2013 Jan 7.

20.

Studies on crenarchaeal tyrosylation accuracy with mutational analyses of tyrosyl-tRNA synthetase and tyrosine tRNA from Aeropyrum pernix.

Iwaki J, Endo K, Ichikawa T, Suzuki R, Fujimoto Z, Momma M, Kuno A, Nishimura S, Hasegawa T.

J Biochem. 2012 Dec;152(6):539-48. doi: 10.1093/jb/mvs114. Epub 2012 Sep 29.

PMID:
23024156
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