Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 47

1.

Deep learning of the tissue-regulated splicing code.

Leung MK, Xiong HY, Lee LJ, Frey BJ.

Bioinformatics. 2014 Jun 15;30(12):i121-i129. doi: 10.1093/bioinformatics/btu277.

PMID:
24931975
[PubMed - in process]
Free PMC Article
2.

Brain-expressed exons under purifying selection are enriched for de novo mutations in autism spectrum disorder.

Uddin M, Tammimies K, Pellecchia G, Alipanahi B, Hu P, Wang Z, Pinto D, Lau L, Nalpathamkalam T, Marshall CR, Blencowe BJ, Frey BJ, Merico D, Yuen RK, Scherer SW.

Nat Genet. 2014 Jul;46(7):742-7. doi: 10.1038/ng.2980. Epub 2014 May 25.

PMID:
24859339
[PubMed - in process]
3.

AVISPA: a web tool for the prediction and analysis of alternative splicing.

Barash Y, Vaquero-Garcia J, González-Vallinas J, Xiong HY, Gao W, Lee LJ, Frey BJ.

Genome Biol. 2013;14(10):R114.

PMID:
24156756
[PubMed - in process]
Free PMC Article
4.

Network cleanup.

Alipanahi B, Frey BJ.

Nat Biotechnol. 2013 Aug;31(8):714-5. doi: 10.1038/nbt.2657. No abstract available.

PMID:
23929347
[PubMed - indexed for MEDLINE]
5.

A compendium of RNA-binding motifs for decoding gene regulation.

Ray D, Kazan H, Cook KB, Weirauch MT, Najafabadi HS, Li X, Gueroussov S, Albu M, Zheng H, Yang A, Na H, Irimia M, Matzat LH, Dale RK, Smith SA, Yarosh CA, Kelly SM, Nabet B, Mecenas D, Li W, Laishram RS, Qiao M, Lipshitz HD, Piano F, Corbett AH, Carstens RP, Frey BJ, Anderson RA, Lynch KW, Penalva LO, Lei EP, Fraser AG, Blencowe BJ, Morris QD, Hughes TR.

Nature. 2013 Jul 11;499(7457):172-7. doi: 10.1038/nature12311.

PMID:
23846655
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

MBNL proteins repress ES-cell-specific alternative splicing and reprogramming.

Han H, Irimia M, Ross PJ, Sung HK, Alipanahi B, David L, Golipour A, Gabut M, Michael IP, Nachman EN, Wang E, Trcka D, Thompson T, O'Hanlon D, Slobodeniuc V, Barbosa-Morais NL, Burge CB, Moffat J, Frey BJ, Nagy A, Ellis J, Wrana JL, Blencowe BJ.

Nature. 2013 Jun 13;498(7453):241-5. doi: 10.1038/nature12270. Epub 2013 Jun 5.

PMID:
23739326
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Prevention of root caries: a literature review of primary and secondary preventive agents.

Gluzman R, Katz RV, Frey BJ, McGowan R.

Spec Care Dentist. 2013 May-Jun;33(3):133-40. doi: 10.1111/j.1754-4505.2012.00318.x. Epub 2012 Dec 10. Review.

PMID:
23600985
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Mutations in STAMBP, encoding a deubiquitinating enzyme, cause microcephaly-capillary malformation syndrome.

McDonell LM, Mirzaa GM, Alcantara D, Schwartzentruber J, Carter MT, Lee LJ, Clericuzio CL, Graham JM Jr, Morris-Rosendahl DJ, Polster T, Acsadi G, Townshend S, Williams S, Halbert A, Isidor B, David A, Smyser CD, Paciorkowski AR, Willing M, Woulfe J, Das S, Beaulieu CL, Marcadier J; FORGE Canada Consortium, Geraghty MT, Frey BJ, Majewski J, Bulman DE, Dobyns WB, O'Driscoll M, Boycott KM.

Nat Genet. 2013 May;45(5):556-62. doi: 10.1038/ng.2602. Epub 2013 Mar 31.

PMID:
23542699
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Non-parametric Bayesian approach to post-translational modification refinement of predictions from tandem mass spectrometry.

Chung C, Emili A, Frey BJ.

Bioinformatics. 2013 Apr 1;29(7):821-9. doi: 10.1093/bioinformatics/btt056. Epub 2013 Feb 17.

PMID:
23419374
[PubMed - indexed for MEDLINE]
Free Article
10.

The evolutionary landscape of alternative splicing in vertebrate species.

Barbosa-Morais NL, Irimia M, Pan Q, Xiong HY, Gueroussov S, Lee LJ, Slobodeniuc V, Kutter C, Watt S, Colak R, Kim T, Misquitta-Ali CM, Wilson MD, Kim PM, Odom DT, Frey BJ, Blencowe BJ.

Science. 2012 Dec 21;338(6114):1587-93. doi: 10.1126/science.1230612.

PMID:
23258890
[PubMed - indexed for MEDLINE]
11.

A generalizable pre-clinical research approach for orphan disease therapy.

Beaulieu CL, Samuels ME, Ekins S, McMaster CR, Edwards AM, Krainer AR, Hicks GG, Frey BJ, Boycott KM, Mackenzie AE.

Orphanet J Rare Dis. 2012 Jun 15;7:39. Review.

PMID:
22704758
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Challenges in estimating percent inclusion of alternatively spliced junctions from RNA-seq data.

Kakaradov B, Xiong HY, Lee LJ, Jojic N, Frey BJ.

BMC Bioinformatics. 2012 Apr 19;13 Suppl 6:S11. doi: 10.1186/1471-2105-13-S6-S11.

PMID:
22537040
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Transcriptional profiling of endocrine cerebro-osteodysplasia using microarray and next-generation sequencing.

Lahiry P, Lee LJ, Frey BJ, Rupar CA, Siu VM, Blencowe BJ, Hegele RA.

PLoS One. 2011;6(9):e25400. doi: 10.1371/journal.pone.0025400. Epub 2011 Sep 27.

PMID:
21980446
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Bayesian prediction of tissue-regulated splicing using RNA sequence and cellular context.

Xiong HY, Barash Y, Frey BJ.

Bioinformatics. 2011 Sep 15;27(18):2554-62. doi: 10.1093/bioinformatics/btr444. Epub 2011 Jul 29.

PMID:
21803804
[PubMed - indexed for MEDLINE]
Free Article
15.

Computational refinement of post-translational modifications predicted from tandem mass spectrometry.

Chung C, Liu J, Emili A, Frey BJ.

Bioinformatics. 2011 Mar 15;27(6):797-806. doi: 10.1093/bioinformatics/btr017. Epub 2011 Jan 22.

PMID:
21258065
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Model-based detection of alternative splicing signals.

Barash Y, Blencowe BJ, Frey BJ.

Bioinformatics. 2010 Jun 15;26(12):i325-33. doi: 10.1093/bioinformatics/btq200.

PMID:
20529924
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Deciphering the splicing code.

Barash Y, Calarco JA, Gao W, Pan Q, Wang X, Shai O, Blencowe BJ, Frey BJ.

Nature. 2010 May 6;465(7294):53-9. doi: 10.1038/nature09000.

PMID:
20445623
[PubMed - indexed for MEDLINE]
18.

Varicose veins. Today's treatment tools.

Frey BJ.

Adv Nurse Pract. 2009 Jun;17(6):49-51. No abstract available.

PMID:
20000185
[PubMed - indexed for MEDLINE]
19.

A binary variable model for affinity propagation.

Givoni IE, Frey BJ.

Neural Comput. 2009 Jun;21(6):1589-600. doi: 10.1162/neco.2009.05-08-785.

PMID:
19191593
[PubMed - indexed for MEDLINE]
20.

Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing.

Pan Q, Shai O, Lee LJ, Frey BJ, Blencowe BJ.

Nat Genet. 2008 Dec;40(12):1413-5. doi: 10.1038/ng.259. Epub 2008 Nov 2. Erratum in: Nat Genet. 2009 Jun;41(6):762.

PMID:
18978789
[PubMed - indexed for MEDLINE]

Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Write to the Help Desk