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Results: 1 to 20 of 46

1.

Discordance of DNA Methylation Variance Between two Accessible Human Tissues.

Jiang R, Jones MJ, Chen E, Neumann SM, Fraser HB, Miller GE, Kobor MS.

Sci Rep. 2015 Feb 9;5:8257. doi: 10.1038/srep08257.

PMID:
25660083
[PubMed - in process]
Free PMC Article
2.

Accounting for biases in riboprofiling data indicates a major role for proline in stalling translation.

Artieri CG, Fraser HB.

Genome Res. 2014 Dec;24(12):2011-21. doi: 10.1101/gr.175893.114. Epub 2014 Oct 7.

PMID:
25294246
[PubMed - in process]
3.

Transcript length mediates developmental timing of gene expression across Drosophila.

Artieri CG, Fraser HB.

Mol Biol Evol. 2014 Nov;31(11):2879-89. doi: 10.1093/molbev/msu226. Epub 2014 Jul 28.

PMID:
25069653
[PubMed - in process]
Free PMC Article
4.

Evolution at two levels of gene expression in yeast.

Artieri CG, Fraser HB.

Genome Res. 2014 Mar;24(3):411-21. doi: 10.1101/gr.165522.113. Epub 2013 Dec 6.

PMID:
24318729
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Cell-cycle regulated transcription associates with DNA replication timing in yeast and human.

Fraser HB.

Genome Biol. 2013;14(10):R111.

PMID:
24098959
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

The molecular mechanism of a cis-regulatory adaptation in yeast.

Chang J, Zhou Y, Hu X, Lam L, Henry C, Green EM, Kita R, Kobor MS, Fraser HB.

PLoS Genet. 2013;9(9):e1003813. doi: 10.1371/journal.pgen.1003813. Epub 2013 Sep 19.

PMID:
24068973
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

A novel test for selection on cis-regulatory elements reveals positive and negative selection acting on mammalian transcriptional enhancers.

Smith JD, McManus KF, Fraser HB.

Mol Biol Evol. 2013 Nov;30(11):2509-18. doi: 10.1093/molbev/mst134. Epub 2013 Jul 30.

PMID:
23904330
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Ancient cis-regulatory constraints and the evolution of genome architecture.

Irimia M, Maeso I, Roy SW, Fraser HB.

Trends Genet. 2013 Sep;29(9):521-8. doi: 10.1016/j.tig.2013.05.008. Epub 2013 Jun 18. Review.

PMID:
23791467
[PubMed - indexed for MEDLINE]
9.

Reply to Suderman et al.: Importance of accounting for blood cell composition in epigenetic studies.

Lam LL, Emberly E, Fraser HB, Neumann SM, Chen E, Miller GE, Kobor MS.

Proc Natl Acad Sci U S A. 2013 Apr 2;110(14):E1247. No abstract available.

PMID:
23667927
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Gene expression drives local adaptation in humans.

Fraser HB.

Genome Res. 2013 Jul;23(7):1089-96. doi: 10.1101/gr.152710.112. Epub 2013 Mar 28.

PMID:
23539138
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Differences in enhancer activity in mouse and zebrafish reporter assays are often associated with changes in gene expression.

Ariza-Cosano A, Visel A, Pennacchio LA, Fraser HB, Gómez-Skarmeta JL, Irimia M, Bessa J.

BMC Genomics. 2012 Dec 19;13:713. doi: 10.1186/1471-2164-13-713.

PMID:
23253453
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Factors underlying variable DNA methylation in a human community cohort.

Lam LL, Emberly E, Fraser HB, Neumann SM, Chen E, Miller GE, Kobor MS.

Proc Natl Acad Sci U S A. 2012 Oct 16;109 Suppl 2:17253-60. doi: 10.1073/pnas.1121249109. Epub 2012 Oct 8.

PMID:
23045638
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Extensive conservation of ancient microsynteny across metazoans due to cis-regulatory constraints.

Irimia M, Tena JJ, Alexis MS, Fernandez-Miñan A, Maeso I, Bogdanovic O, de la Calle-Mustienes E, Roy SW, Gómez-Skarmeta JL, Fraser HB.

Genome Res. 2012 Dec;22(12):2356-67. doi: 10.1101/gr.139725.112. Epub 2012 Jun 21.

PMID:
22722344
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Polygenic cis-regulatory adaptation in the evolution of yeast pathogenicity.

Fraser HB, Levy S, Chavan A, Shah HB, Perez JC, Zhou Y, Siegal ML, Sinha H.

Genome Res. 2012 Oct;22(10):1930-9. doi: 10.1101/gr.134080.111. Epub 2012 May 29.

PMID:
22645260
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Population-specificity of human DNA methylation.

Fraser HB, Lam LL, Neumann SM, Kobor MS.

Genome Biol. 2012 Feb 9;13(2):R8. doi: 10.1186/gb-2012-13-2-r8.

PMID:
22322129
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Predictive genes in adjacent normal tissue are preferentially altered by sCNV during tumorigenesis in liver cancer and may rate limiting.

Lamb JR, Zhang C, Xie T, Wang K, Zhang B, Hao K, Chudin E, Fraser HB, Millstein J, Ferguson M, Suver C, Ivanovska I, Scott M, Philippar U, Bansal D, Zhang Z, Burchard J, Smith R, Greenawalt D, Cleary M, Derry J, Loboda A, Watters J, Poon RT, Fan ST, Yeung C, Lee NP, Guinney J, Molony C, Emilsson V, Buser-Doepner C, Zhu J, Friend S, Mao M, Shaw PM, Dai H, Luk JM, Schadt EE.

PLoS One. 2011;6(7):e20090. doi: 10.1371/journal.pone.0020090. Epub 2011 Jul 5.

PMID:
21750698
[PubMed - indexed for MEDLINE]
Free PMC Article
17.
18.

Systematic detection of polygenic cis-regulatory evolution.

Fraser HB, Babak T, Tsang J, Zhou Y, Zhang B, Mehrabian M, Schadt EE.

PLoS Genet. 2011 Mar;7(3):e1002023. doi: 10.1371/journal.pgen.1002023. Epub 2011 Mar 31.

PMID:
21483757
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Genetic validation of whole-transcriptome sequencing for mapping expression affected by cis-regulatory variation.

Babak T, Garrett-Engele P, Armour CD, Raymond CK, Keller MP, Chen R, Rohl CA, Johnson JM, Attie AD, Fraser HB, Schadt EE.

BMC Genomics. 2010 Aug 13;11:473. doi: 10.1186/1471-2164-11-473.

PMID:
20707912
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Evidence for widespread adaptive evolution of gene expression in budding yeast.

Fraser HB, Moses AM, Schadt EE.

Proc Natl Acad Sci U S A. 2010 Feb 16;107(7):2977-82. doi: 10.1073/pnas.0912245107. Epub 2010 Jan 28.

PMID:
20133628
[PubMed - indexed for MEDLINE]
Free PMC Article
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