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Items: 1 to 20 of 25

1.

Which Phylogenetic Networks are Merely Trees with Additional Arcs?

Francis AR, Steel M.

Syst Biol. 2015 Sep;64(5):768-77. doi: 10.1093/sysbio/syv037. Epub 2015 Jun 11.

2.

Algebraic double cut and join : A group-theoretic approach to the operator on multichromosomal genomes.

Bhatia S, Egri-Nagy A, Francis AR.

J Math Biol. 2015 Nov;71(5):1149-78. doi: 10.1007/s00285-014-0852-1. Epub 2014 Dec 11.

PMID:
25502846
3.

Tree-like reticulation networks--when do tree-like distances also support reticulate evolution?

Francis AR, Steel M.

Math Biosci. 2015 Jan;259:12-9. doi: 10.1016/j.mbs.2014.10.008. Epub 2014 Nov 11.

PMID:
25447812
4.

An algebraic view of bacterial genome evolution.

Francis AR.

J Math Biol. 2014 Dec;69(6-7):1693-718. doi: 10.1007/s00285-013-0747-6. Epub 2013 Dec 29.

PMID:
24375264
5.

Group-theoretic models of the inversion process in bacterial genomes.

Egri-Nagy A, Gebhardt V, Tanaka MM, Francis AR.

J Math Biol. 2014 Jul;69(1):243-65. doi: 10.1007/s00285-013-0702-6. Epub 2013 Jun 23.

PMID:
23793228
6.

Evolution of variation in presence and absence of genes in bacterial pathways.

Francis AR, Tanaka MM.

BMC Evol Biol. 2012 Apr 20;12:55. doi: 10.1186/1471-2148-12-55.

7.

A discussion on the process of defining 2-D separation selectivity.

Stevenson PG, Mnatsakanyan M, Francis AR, Shalliker RA.

J Sep Sci. 2010 Jun;33(10):1405-13. doi: 10.1002/jssc.200900779.

PMID:
20309899
8.

Conditions for the evolution of gene clusters in bacterial genomes.

Ballouz S, Francis AR, Lan R, Tanaka MM.

PLoS Comput Biol. 2010 Feb 12;6(2):e1000672. doi: 10.1371/journal.pcbi.1000672.

9.

The epidemiological fitness cost of drug resistance in Mycobacterium tuberculosis.

Luciani F, Sisson SA, Jiang H, Francis AR, Tanaka MM.

Proc Natl Acad Sci U S A. 2009 Aug 25;106(34):14711-5. doi: 10.1073/pnas.0902437106. Epub 2009 Aug 13.

10.

Models of deletion for visualizing bacterial variation: an application to tuberculosis spoligotypes.

Reyes JF, Francis AR, Tanaka MM.

BMC Bioinformatics. 2008 Nov 27;9:496. doi: 10.1186/1471-2105-9-496.

11.

spolTools: online utilities for analyzing spoligotypes of the Mycobacterium tuberculosis complex.

Tang C, Reyes JF, Luciani F, Francis AR, Tanaka MM.

Bioinformatics. 2008 Oct 15;24(20):2414-5. doi: 10.1093/bioinformatics/btn434. Epub 2008 Aug 18.

12.

Interpreting genotype cluster sizes of Mycobacterium tuberculosis isolates typed with IS6110 and spoligotyping.

Luciani F, Francis AR, Tanaka MM.

Infect Genet Evol. 2008 Mar;8(2):182-90. doi: 10.1016/j.meegid.2007.12.004. Epub 2008 Feb 1.

PMID:
18243064
13.

Detecting emerging strains of tuberculosis by using spoligotypes.

Tanaka MM, Francis AR.

Proc Natl Acad Sci U S A. 2006 Oct 10;103(41):15266-71. Epub 2006 Oct 2.

14.
15.

Using approximate Bayesian computation to estimate tuberculosis transmission parameters from genotype data.

Tanaka MM, Francis AR, Luciani F, Sisson SA.

Genetics. 2006 Jul;173(3):1511-20. Epub 2006 Apr 19.

16.

Methods of quantifying and visualising outbreaks of tuberculosis using genotypic information.

Tanaka MM, Francis AR.

Infect Genet Evol. 2005 Jan;5(1):35-43.

PMID:
15567137
17.

Changes in Medicaid mean changes for NPs.

Francis AR.

NP News. 1996 Mar-Apr;4(2):1, 4. No abstract available.

PMID:
8932078
18.

Modulating effect of plant flavonoids on the mutagenicity of N-methyl-N'-nitro-N-nitrosoguanidine.

Francis AR, Shetty TK, Bhattacharya RK.

Carcinogenesis. 1989 Oct;10(10):1953-5.

PMID:
2676226
19.
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