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Results: 1 to 20 of 34

1.

Instructive Nanofibrous Scaffold Comprising Runt-Related Transcription Factor 2 Gene Delivery for Bone Tissue Engineering.

Monteiro N, Ribeiro D, Martins A, Faria S, Fonseca NA, Moreira JN, Reis RL, Neves NM.

ACS Nano. 2014 Jul 30. [Epub ahead of print]

PMID:
25046548
[PubMed - as supplied by publisher]
2.

Long-range enhancers regulating Myc expression are required for normal facial morphogenesis.

Uslu VV, Petretich M, Ruf S, Langenfeld K, Fonseca NA, Marioni JC, Spitz F.

Nat Genet. 2014 Jul;46(7):753-8. doi: 10.1038/ng.2971. Epub 2014 May 25.

PMID:
24859337
[PubMed - in process]
3.

Bridging cancer biology and the patients' needs with nanotechnology-based approaches.

Fonseca NA, Gregório AC, Valério-Fernandes A, Simões S, Moreira JN.

Cancer Treat Rev. 2014 Jun;40(5):626-35. doi: 10.1016/j.ctrv.2014.02.002. Epub 2014 Feb 22. Review.

PMID:
24613464
[PubMed - indexed for MEDLINE]
4.

Expression Atlas update--a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments.

Petryszak R, Burdett T, Fiorelli B, Fonseca NA, Gonzalez-Porta M, Hastings E, Huber W, Jupp S, Keays M, Kryvych N, McMurry J, Marioni JC, Malone J, Megy K, Rustici G, Tang AY, Taubert J, Williams E, Mannion O, Parkinson HE, Brazma A.

Nucleic Acids Res. 2014 Jan;42(Database issue):D926-32. doi: 10.1093/nar/gkt1270. Epub 2013 Dec 4.

PMID:
24304889
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Improving the performance of Transposable Elements detection tools.

Loureiro T, Camacho R, Vieira J, Fonseca NA.

J Integr Bioinform. 2013 Nov 14;10(3):231. doi: 10.2390/biecoll-jib-2013-231.

PMID:
24231145
[PubMed - indexed for MEDLINE]
6.

On the use of dexamethasone-loaded liposomes to induce the osteogenic differentiation of human mesenchymal stem cells.

Monteiro N, Martins A, Ribeiro D, Faria S, Fonseca NA, Moreira JN, Reis RL, Neves NM.

J Tissue Eng Regen Med. 2013 Oct 7. doi: 10.1002/term.1817. [Epub ahead of print]

PMID:
24123949
[PubMed - as supplied by publisher]
7.

Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species.

Bradnam KR, Fass JN, Alexandrov A, Baranay P, Bechner M, Birol I, Boisvert S, Chapman JA, Chapuis G, Chikhi R, Chitsaz H, Chou WC, Corbeil J, Del Fabbro C, Docking TR, Durbin R, Earl D, Emrich S, Fedotov P, Fonseca NA, Ganapathy G, Gibbs RA, Gnerre S, Godzaridis E, Goldstein S, Haimel M, Hall G, Haussler D, Hiatt JB, Ho IY, Howard J, Hunt M, Jackman SD, Jaffe DB, Jarvis ED, Jiang H, Kazakov S, Kersey PJ, Kitzman JO, Knight JR, Koren S, Lam TW, Lavenier D, Laviolette F, Li Y, Li Z, Liu B, Liu Y, Luo R, Maccallum I, Macmanes MD, Maillet N, Melnikov S, Naquin D, Ning Z, Otto TD, Paten B, Paulo OS, Phillippy AM, Pina-Martins F, Place M, Przybylski D, Qin X, Qu C, Ribeiro FJ, Richards S, Rokhsar DS, Ruby JG, Scalabrin S, Schatz MC, Schwartz DC, Sergushichev A, Sharpe T, Shaw TI, Shendure J, Shi Y, Simpson JT, Song H, Tsarev F, Vezzi F, Vicedomini R, Vieira BM, Wang J, Worley KC, Yin S, Yiu SM, Yuan J, Zhang G, Zhang H, Zhou S, Korf IF.

Gigascience. 2013 Jul 22;2(1):10. doi: 10.1186/2047-217X-2-10.

PMID:
23870653
[PubMed]
Free PMC Article
8.

The Drosophila melanogaster methuselah gene: a novel gene with ancient functions.

Araújo AR, Reis M, Rocha H, Aguiar B, Morales-Hojas R, Macedo-Ribeiro S, Fonseca NA, Reboiro-Jato D, Reboiro-Jato M, Fdez-Riverola F, Vieira CP, Vieira J.

PLoS One. 2013 May 16;8(5):e63747. doi: 10.1371/journal.pone.0063747. Print 2013.

PMID:
23696853
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Patterns of evolution at the gametophytic self-incompatibility Sorbus aucuparia (Pyrinae) S pollen genes support the non-self recognition by multiple factors model.

Aguiar B, Vieira J, Cunha AE, Fonseca NA, Reboiro-Jato D, Reboiro-Jato M, Fdez-Riverola F, Raspé O, Vieira CP.

J Exp Bot. 2013 May;64(8):2423-34. doi: 10.1093/jxb/ert098. Epub 2013 Apr 19.

PMID:
23606363
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Drosophila americana as a model species for comparative studies on the molecular basis of phenotypic variation.

Fonseca NA, Morales-Hojas R, Reis M, Rocha H, Vieira CP, Nolte V, Schlötterer C, Vieira J.

Genome Biol Evol. 2013;5(4):661-79. doi: 10.1093/gbe/evt037.

PMID:
23493635
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Predicting the secondary structure of proteins using machine learning algorithms.

Camacho R, Ferreira R, Rosa N, Guimarães V, Fonseca NA, Costa VS, de Sousa M, Magalhães A.

Int J Data Min Bioinform. 2012;6(6):571-84.

PMID:
23356008
[PubMed - indexed for MEDLINE]
12.

Tools for mapping high-throughput sequencing data.

Fonseca NA, Rung J, Brazma A, Marioni JC.

Bioinformatics. 2012 Dec 15;28(24):3169-77. doi: 10.1093/bioinformatics/bts605. Epub 2012 Oct 11.

PMID:
23060614
[PubMed - indexed for MEDLINE]
Free Article
13.

ADOPS--Automatic Detection Of Positively Selected Sites.

Reboiro-Jato D, Reboiro-Jato M, Fdez-Riverola F, Vieira CP, Fonseca NA, Vieira J.

J Integr Bioinform. 2012 Jul 24;9(3):200. doi: 10.2390/biecoll-jib-2012-200.

PMID:
22829571
[PubMed - indexed for MEDLINE]
14.

Effect of holding medium, temperature and time on structural integrity of equine ovarian follicles during the non-breeding season.

Gomes RG, Andrade ER, Lisboa LA, Ciquini A, Barreiros TR, Fonseca NA, Seneda MM.

Theriogenology. 2012 Sep 1;78(4):731-6. doi: 10.1016/j.theriogenology.2012.03.019. Epub 2012 May 23.

PMID:
22626777
[PubMed - indexed for MEDLINE]
15.

Lipid-based nanoparticles for siRNA delivery in cancer therapy: paradigms and challenges.

Gomes-da-Silva LC, Fonseca NA, Moura V, Pedroso de Lima MC, Simões S, Moreira JN.

Acc Chem Res. 2012 Jul 17;45(7):1163-71. doi: 10.1021/ar300048p. Epub 2012 May 8.

PMID:
22568781
[PubMed - indexed for MEDLINE]
16.

The DAIBAM MITE element is involved in the origin of one fixed and two polymorphic Drosophila virilis phylad inversions.

Fonseca NA, Vieira CP, Schlötterer C, Vieira J.

Fly (Austin). 2012 Apr-Jun;6(2):71-4. doi: 10.4161/fly.19423. Epub 2012 Apr 1.

PMID:
22561870
[PubMed - indexed for MEDLINE]
17.

Predicting Malignancy from Mammography Findings and Surgical Biopsies.

Ferreira P, Fonseca NA, Dutra I, Woods R, Burnside E.

Proceedings (IEEE Int Conf Bioinformatics Biomed). 2011 Nov;2011. doi: 10.1109/BIBM.2011.71.

PMID:
24363962
[PubMed]
Free PMC Article
18.

A relational learning approach to Structure-Activity Relationships in drug design toxicity studies.

Camacho R, Pereira M, Costa VS, Fonseca NA, Adriano C, Simões CJ, Brito RM.

J Integr Bioinform. 2011 Sep 16;8(3):182. doi: 10.2390/biecoll-jib-2011-182.

PMID:
21926445
[PubMed - indexed for MEDLINE]
19.

Assemblathon 1: a competitive assessment of de novo short read assembly methods.

Earl D, Bradnam K, St John J, Darling A, Lin D, Fass J, Yu HO, Buffalo V, Zerbino DR, Diekhans M, Nguyen N, Ariyaratne PN, Sung WK, Ning Z, Haimel M, Simpson JT, Fonseca NA, Birol İ, Docking TR, Ho IY, Rokhsar DS, Chikhi R, Lavenier D, Chapuis G, Naquin D, Maillet N, Schatz MC, Kelley DR, Phillippy AM, Koren S, Yang SP, Wu W, Chou WC, Srivastava A, Shaw TI, Ruby JG, Skewes-Cox P, Betegon M, Dimon MT, Solovyev V, Seledtsov I, Kosarev P, Vorobyev D, Ramirez-Gonzalez R, Leggett R, MacLean D, Xia F, Luo R, Li Z, Xie Y, Liu B, Gnerre S, MacCallum I, Przybylski D, Ribeiro FJ, Yin S, Sharpe T, Hall G, Kersey PJ, Durbin R, Jackman SD, Chapman JA, Huang X, DeRisi JL, Caccamo M, Li Y, Jaffe DB, Green RE, Haussler D, Korf I, Paten B.

Genome Res. 2011 Dec;21(12):2224-41. doi: 10.1101/gr.126599.111. Epub 2011 Sep 16.

PMID:
21926179
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Amino acid pair- and triplet-wise groupings in the interior of α-helical segments in proteins.

de Sousa MM, Munteanu CR, Pazos A, Fonseca NA, Camacho R, Magalhães AL.

J Theor Biol. 2010 Dec 2. [Epub ahead of print]

PMID:
21130100
[PubMed - as supplied by publisher]

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