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Items: 1 to 20 of 26

1.

Toward a Pathway Inventory of the Human Brain for Modeling Disease Mechanisms Underlying Neurodegeneration.

Iyappan A, Gündel M, Shahid M, Wang J, Li H, Mevissen HT, Müller B, Fluck J, Jirsa V, Domide L, Younesi E, Hofmann-Apitius M.

J Alzheimers Dis. 2016 Apr 12. [Epub ahead of print]

PMID:
27079715
2.

Construction of biological networks from unstructured information based on a semi-automated curation workflow.

Szostak J, Ansari S, Madan S, Fluck J, Talikka M, Iskandar A, De Leon H, Hofmann-Apitius M, Peitsch MC, Hoeng J.

Database (Oxford). 2015 Jun 17;2015:bav057. doi: 10.1093/database/bav057.

3.

Detecting miRNA Mentions and Relations in Biomedical Literature.

Bagewadi S, Bobić T, Hofmann-Apitius M, Fluck J, Klinger R.

Version 3. F1000Res. 2014 Aug 28 [revised 2015 Oct 1];3:205. doi: 10.12688/f1000research.4591.3. eCollection 2014.

4.

Text mining for systems biology.

Fluck J, Hofmann-Apitius M.

Drug Discov Today. 2014 Feb;19(2):140-4. doi: 10.1016/j.drudis.2013.09.012. Epub 2013 Sep 23. Review.

PMID:
24070668
5.

Mining biomarker information in biomedical literature.

Younesi E, Toldo L, Müller B, Friedrich CM, Novac N, Scheer A, Hofmann-Apitius M, Fluck J.

BMC Med Inform Decis Mak. 2012 Dec 18;12:148. doi: 10.1186/1472-6947-12-148.

6.

Text mining in livestock animal science: introducing the potential of text mining to animal sciences.

Sahadevan S, Hofmann-Apitius M, Schellander K, Tesfaye D, Fluck J, Friedrich CM.

J Anim Sci. 2012 Oct;90(10):3666-76. doi: 10.2527/jas.2011-4841. Epub 2012 Jun 4.

7.

Development of a benchmark corpus to support the automatic extraction of drug-related adverse effects from medical case reports.

Gurulingappa H, Rajput AM, Roberts A, Fluck J, Hofmann-Apitius M, Toldo L.

J Biomed Inform. 2012 Oct;45(5):885-92. doi: 10.1016/j.jbi.2012.04.008. Epub 2012 Apr 25.

8.

Concept-based semi-automatic classification of drugs.

Gurulingappa H, Kolárik C, Hofmann-Apitius M, Fluck J.

J Chem Inf Model. 2009 Aug;49(8):1986-92. doi: 10.1021/ci9000844.

PMID:
19663460
9.

Overview of BioCreative II gene normalization.

Morgan AA, Lu Z, Wang X, Cohen AM, Fluck J, Ruch P, Divoli A, Fundel K, Leaman R, Hakenberg J, Sun C, Liu HH, Torres R, Krauthammer M, Lau WW, Liu H, Hsu CN, Schuemie M, Cohen KB, Hirschman L.

Genome Biol. 2008;9 Suppl 2:S3. doi: 10.1186/gb-2008-9-s2-s3. Epub 2008 Sep 1.

10.

Detection of IUPAC and IUPAC-like chemical names.

Klinger R, Kolárik C, Fluck J, Hofmann-Apitius M, Friedrich CM.

Bioinformatics. 2008 Jul 1;24(13):i268-76. doi: 10.1093/bioinformatics/btn181.

11.

Knowledge environments representing molecular entities for the virtual physiological human.

Hofmann-Apitius M, Fluck J, Furlong L, Fornes O, Kolárik C, Hanser S, Boeker M, Schulz S, Sanz F, Klinger R, Mevissen T, Gattermayer T, Oliva B, Friedrich CM.

Philos Trans A Math Phys Eng Sci. 2008 Sep 13;366(1878):3091-110. doi: 10.1098/rsta.2008.0099.

12.

Identifying gene-specific variations in biomedical text.

Klinger R, Friedrich CM, Mevissen HT, Fluck J, Hofmann-Apitius M, Furlong LI, Sanz F.

J Bioinform Comput Biol. 2007 Dec;5(6):1277-96.

PMID:
18172929
13.

Identification of new drug classification terms in textual resources.

Kolárik C, Hofmann-Apitius M, Zimmermann M, Fluck J.

Bioinformatics. 2007 Jul 1;23(13):i264-72.

14.

The Autoimmune Disease Database: a dynamically compiled literature-derived database.

Karopka T, Fluck J, Mevissen HT, Glass A.

BMC Bioinformatics. 2006 Jun 27;7:325.

15.

Autocrine proliferating B cells are susceptible to terminal differentiation and apoptosis.

Fluck J, Schachtschneider S, Abken H.

Cell Death Differ. 1997 Dec;4(8):824-33.

16.

Information extraction technologies for the life science industry.

Fluck J, Zimmermann M, Kurapkat G, Hofmann M.

Drug Discov Today Technol. 2005 Autumn;2(3):217-24. doi: 10.1016/j.ddtec.2005.08.013.

PMID:
24981939
17.

Information extraction in the life sciences: perspectives for medicinal chemistry, pharmacology and toxicology.

Zimmermann M, Fluck J, Thi le TB, Kolárik C, Kumpf K, Hofmann M.

Curr Top Med Chem. 2005;5(8):785-96. Review.

PMID:
16101418
18.

ProMiner: rule-based protein and gene entity recognition.

Hanisch D, Fundel K, Mevissen HT, Zimmer R, Fluck J.

BMC Bioinformatics. 2005;6 Suppl 1:S14. Epub 2005 May 24.

19.

Microarrays: how many do you need?

Zien A, Fluck J, Zimmer R, Lengauer T.

J Comput Biol. 2003;10(3-4):653-67.

PMID:
12935350
20.

Playing biology's name game: identifying protein names in scientific text.

Hanisch D, Fluck J, Mevissen HT, Zimmer R.

Pac Symp Biocomput. 2003:403-14.

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