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Results: 1 to 20 of 158

1.

PIP-DB: The Protein Isoelectric Point Database.

Bunkute E, Cummins C, Crofts F, Bunce G, Nabney IT, Flower DR.

Bioinformatics. 2014 Sep 23. pii: btu637. [Epub ahead of print]

PMID:
25252779
[PubMed - as supplied by publisher]
2.

AllerTOP v.2--a server for in silico prediction of allergens.

Dimitrov I, Bangov I, Flower DR, Doytchinova I.

J Mol Model. 2014 Jun;20(6):2278. doi: 10.1007/s00894-014-2278-5. Epub 2014 May 31.

PMID:
24878803
[PubMed - in process]
3.

Peptide-based immunotherapeutics and vaccines.

Reche PA, Fernandez-Caldas E, Flower DR, Fridkis-Hareli M, Hoshino Y.

J Immunol Res. 2014;2014:256784. doi: 10.1155/2014/256784. Epub 2014 Feb 4. No abstract available.

PMID:
24741581
[PubMed - in process]
Free PMC Article
4.

Selection of conserved epitopes from hepatitis C virus for pan-populational stimulation of T-cell responses.

Molero-Abraham M, Lafuente EM, Flower DR, Reche PA.

Clin Dev Immunol. 2013;2013:601943. doi: 10.1155/2013/601943. Epub 2013 Nov 21.

PMID:
24348677
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Designing immunogenic peptides.

Flower DR.

Nat Chem Biol. 2013 Dec;9(12):749-53. doi: 10.1038/nchembio.1383.

PMID:
24231606
[PubMed - indexed for MEDLINE]
6.

Histidine hydrogen bonding in MHC at pH 5 and pH 7 modeled by molecular docking and molecular dynamics simulations.

Patronov A, Salamanova E, Dimitrov I, Flower DR, Doytchinova I.

Curr Comput Aided Drug Des. 2014 Mar;10(1):41-9.

PMID:
24138415
[PubMed - in process]
7.

AllerTOP--a server for in silico prediction of allergens.

Dimitrov I, Flower DR, Doytchinova I.

BMC Bioinformatics. 2013;14 Suppl 6:S4. doi: 10.1186/1471-2105-14-S6-S4. Epub 2013 Apr 17.

PMID:
23735058
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

EpiDOCK: a molecular docking-based tool for MHC class II binding prediction.

Atanasova M, Patronov A, Dimitrov I, Flower DR, Doytchinova I.

Protein Eng Des Sel. 2013 Oct;26(10):631-4. doi: 10.1093/protein/gzt018. Epub 2013 May 9.

PMID:
23661105
[PubMed - indexed for MEDLINE]
Free Article
9.

Peptide binding to HLA-DP proteins at pH 5.0 and pH 7.0: a quantitative molecular docking study.

Patronov A, Dimitrov I, Flower DR, Doytchinova I.

BMC Struct Biol. 2012 Aug 5;12:20. doi: 10.1186/1472-6807-12-20.

PMID:
22862845
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

On the utility of alternative amino acid scripts.

Flower DR.

Bioinformation. 2012;8(12):539-42. doi: 10.6026/97320630008539. Epub 2012 Jun 28.

PMID:
22829727
[PubMed]
Free PMC Article
11.

Systematic identification of small molecule adjuvants.

Flower DR.

Expert Opin Drug Discov. 2012 Sep;7(9):807-17. doi: 10.1517/17460441.2012.699958. Epub 2012 Jun 24. Review.

PMID:
22724523
[PubMed - indexed for MEDLINE]
12.

Immunoinformatic evaluation of multiple epitope ensembles as vaccine candidates: E coli 536.

Rai J, Lok KI, Mok CY, Mann H, Noor M, Patel P, Flower DR.

Bioinformation. 2012;8(6):272-5. doi: 10.6026/97320630008272. Epub 2012 Mar 31.

PMID:
22493535
[PubMed]
Free PMC Article
13.

HLA-DP2 binding prediction by molecular dynamics simulations.

Doytchinova I, Petkov P, Dimitrov I, Atanasova M, Flower DR.

Protein Sci. 2011 Nov;20(11):1918-28. doi: 10.1002/pro.732. Epub 2011 Sep 27.

PMID:
21898654
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Peptide binding prediction for the human class II MHC allele HLA-DP2: a molecular docking approach.

Patronov A, Dimitrov I, Flower DR, Doytchinova I.

BMC Struct Biol. 2011 Jul 14;11:32. doi: 10.1186/1472-6807-11-32.

PMID:
21752305
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Present perspectives on the automated classification of the G-protein coupled receptors (GPCRs) at the protein sequence level.

Davies MN, Gloriam DE, Secker A, Freitas AA, Timmis J, Flower DR.

Curr Top Med Chem. 2011;11(15):1994-2009. Review.

PMID:
21470173
[PubMed - indexed for MEDLINE]
16.

Discriminating antigen and non-antigen using proteome dissimilarity III: tumour and parasite antigens.

Ramakrishnan K, Flower DR.

Bioinformation. 2010 Jun 24;5(1):39-42.

PMID:
21346878
[PubMed]
Free PMC Article
17.

Discriminating antigen and non-antigen using proteome dissimilarity II: viral and fungal antigens.

Ramakrishnan K, Flower DR.

Bioinformation. 2010 Jun 24;5(1):35-8.

PMID:
21346877
[PubMed]
Free PMC Article
18.

T-cell epitope prediction and immune complex simulation using molecular dynamics: state of the art and persisting challenges.

Flower DR, Phadwal K, Macdonald IK, Coveney PV, Davies MN, Wan S.

Immunome Res. 2010 Nov 3;6 Suppl 2:S4. doi: 10.1186/1745-7580-6-S2-S4.

PMID:
21067546
[PubMed]
Free PMC Article
19.

Computer aided selection of candidate vaccine antigens.

Flower DR, Macdonald IK, Ramakrishnan K, Davies MN, Doytchinova IA.

Immunome Res. 2010 Nov 3;6 Suppl 2:S1. doi: 10.1186/1745-7580-6-S2-S1.

PMID:
21067543
[PubMed]
Free PMC Article
20.

MHC class I bound to an immunodominant Theileria parva epitope demonstrates unconventional presentation to T cell receptors.

Macdonald IK, Harkiolaki M, Hunt L, Connelley T, Carroll AV, MacHugh ND, Graham SP, Jones EY, Morrison WI, Flower DR, Ellis SA.

PLoS Pathog. 2010 Oct 14;6(10):e1001149. doi: 10.1371/journal.ppat.1001149.

PMID:
20976198
[PubMed - indexed for MEDLINE]
Free PMC Article

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