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HMMER web server: 2015 update.

Finn RD, Clements J, Arndt W, Miller BL, Wheeler TJ, Schreiber F, Bateman A, Eddy SR.

Nucleic Acids Res. 2015 May 5. pii: gkv397. [Epub ahead of print]


Interaction of chromatin with a histone H1 containing swapped N- and C-terminal domains.

Hutchinson JB, Cheema MS, Wang J, Missiaen K, Finn R, Gonzalez-Romero R, Th'ng JP, Hendzel M, Ausio J.

Biosci Rep. 2015 Apr 27. [Epub ahead of print]


Should the poultry red mite Dermanyssus gallinae be of wider concern for veterinary and medical science?

George DR, Finn RD, Graham KM, Mul MF, Maurer V, Moro CV, Sparagano OA.

Parasit Vectors. 2015 Mar 25;8:178. doi: 10.1186/s13071-015-0768-7.


A novel prognostic nomogram accurately predicts hepatocellular carcinoma recurrence after liver transplantation: analysis of 865 consecutive liver transplant recipients.

Agopian VG, Harlander-Locke M, Zarrinpar A, Kaldas FM, Farmer DG, Yersiz H, Finn RS, Tong M, Hiatt JR, Busuttil RW.

J Am Coll Surg. 2015 Apr;220(4):416-27. doi: 10.1016/j.jamcollsurg.2014.12.025. Epub 2014 Dec 27.


The pH sensitivity of Aqp0 channels in tetraploid and diploid teleosts.

Chauvigné F, Zapater C, Stavang JA, Taranger GL, Cerdà J, Finn RN.

FASEB J. 2015 May;29(5):2172-84. doi: 10.1096/fj.14-267625. Epub 2015 Feb 9.


In vitro activity of the mTOR inhibitor everolimus, in a large panel of breast cancer cell lines and analysis for predictors of response.

Hurvitz SA, Kalous O, Conklin D, Desai AJ, Dering J, Anderson L, O'Brien NA, Kolarova T, Finn RS, Linnartz R, Chen D, Slamon DJ.

Breast Cancer Res Treat. 2015 Feb;149(3):669-80. doi: 10.1007/s10549-015-3282-x. Epub 2015 Feb 8.


The complexity, challenges and benefits of comparing two transporter classification systems in TCDB and Pfam.

Chiang Z, Vastermark A, Punta M, Coggill PC, Mistry J, Finn RD, Saier MH Jr.

Brief Bioinform. 2015 Jan 21. pii: bbu053. [Epub ahead of print]


Mitochondrial aquaporin-8-mediated hydrogen peroxide transport is essential for teleost spermatozoon motility.

Chauvigné F, Boj M, Finn RN, Cerdà J.

Sci Rep. 2015 Jan 14;5:7789. doi: 10.1038/srep07789.


Course of the mandibular incisive canal and its impact on harvesting symphysis bone grafts.

Vu DD, Brockhoff HC 2nd, Yates DM, Finn R, Phillips C.

J Oral Maxillofac Surg. 2015 Feb;73(2):258.e1-258.e12. doi: 10.1016/j.joms.2014.10.005. Epub 2014 Oct 19.


DEPTOR is linked to a TORC1-p21 survival proliferation pathway in multiple myeloma cells.

Yang Y, Bardeleben C, Frost P, Hoang B, Shi Y, Finn R, Gera J, Lichtenstein A.

Genes Cancer. 2014 Nov;5(11-12):407-19.


The cyclin-dependent kinase 4/6 inhibitor palbociclib in combination with letrozole versus letrozole alone as first-line treatment of oestrogen receptor-positive, HER2-negative, advanced breast cancer (PALOMA-1/TRIO-18): a randomised phase 2 study.

Finn RS, Crown JP, Lang I, Boer K, Bondarenko IM, Kulyk SO, Ettl J, Patel R, Pinter T, Schmidt M, Shparyk Y, Thummala AR, Voytko NL, Fowst C, Huang X, Kim ST, Randolph S, Slamon DJ.

Lancet Oncol. 2015 Jan;16(1):25-35. doi: 10.1016/S1470-2045(14)71159-3. Epub 2014 Dec 16.


Anatomic analysis of the conchal bowl cartilage.

Brockhoff HC 2nd, Morris CD, Throckmorton GS, Finn R.

J Oral Maxillofac Surg. 2014 Nov;72(11):2248-55. doi: 10.1016/j.joms.2014.04.024. Epub 2014 May 1.


The InterPro protein families database: the classification resource after 15 years.

Mitchell A, Chang HY, Daugherty L, Fraser M, Hunter S, Lopez R, McAnulla C, McMenamin C, Nuka G, Pesseat S, Sangrador-Vegas A, Scheremetjew M, Rato C, Yong SY, Bateman A, Punta M, Attwood TK, Sigrist CJ, Redaschi N, Rivoire C, Xenarios I, Kahn D, Guyot D, Bork P, Letunic I, Gough J, Oates M, Haft D, Huang H, Natale DA, Wu CH, Orengo C, Sillitoe I, Mi H, Thomas PD, Finn RD.

Nucleic Acids Res. 2015 Jan;43(Database issue):D213-21. doi: 10.1093/nar/gku1243. Epub 2014 Nov 26.


The lineage-specific evolution of aquaporin gene clusters facilitated tetrapod terrestrial adaptation.

Finn RN, Chauvigné F, Hlidberg JB, Cutler CP, Cerdà J.

PLoS One. 2014 Nov 26;9(11):e113686. doi: 10.1371/journal.pone.0113686. eCollection 2014.


Rfam 12.0: updates to the RNA families database.

Nawrocki EP, Burge SW, Bateman A, Daub J, Eberhardt RY, Eddy SR, Floden EW, Gardner PP, Jones TA, Tate J, Finn RD.

Nucleic Acids Res. 2015 Jan;43(Database issue):D130-7. doi: 10.1093/nar/gku1063. Epub 2014 Nov 11.


Time to think Ebola: a message from NHS England to frontline clinical staff.

Finn RP, Smith C, Ghafur S, Zarkali A, Adlington K, Winter B, Keogh BE.

BMJ. 2014 Nov 12;349:g6776. doi: 10.1136/bmj.g6776. No abstract available.


NHS: a brave new world? Reflections on the Five Year Forward View.

Adlington K, Finn R, Ghafur S, Smith C, Zarkali A.

Br J Hosp Med (Lond). 2014 Nov;75(11):606-7. doi: 10.12968/hmed.2014.75.11.606. No abstract available.


Phase III study of iniparib plus gemcitabine and carboplatin versus gemcitabine and carboplatin in patients with metastatic triple-negative breast cancer.

O'Shaughnessy J, Schwartzberg L, Danso MA, Miller KD, Rugo HS, Neubauer M, Robert N, Hellerstedt B, Saleh M, Richards P, Specht JM, Yardley DA, Carlson RW, Finn RS, Charpentier E, Garcia-Ribas I, Winer EP.

J Clin Oncol. 2014 Dec 1;32(34):3840-7. doi: 10.1200/JCO.2014.55.2984. Epub 2014 Oct 27.


Rigor in electronic health record knowledge representation: lessons learned from a SNOMED CT clinical content encoding exercise.

Monsen KA, Finn RS, Fleming TE, Garner EJ, LaValla AJ, Riemer JG.

Inform Health Soc Care. 2014 Oct 17:1-15. [Epub ahead of print]


KRAS mutational subtype and copy number predict in vitro response of human pancreatic cancer cell lines to MEK inhibition.

Hamidi H, Lu M, Chau K, Anderson L, Fejzo M, Ginther C, Linnartz R, Zubel A, Slamon DJ, Finn RS.

Br J Cancer. 2014 Oct 28;111(9):1788-801. doi: 10.1038/bjc.2014.475. Epub 2014 Aug 28.

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