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Results: 1 to 20 of 24

1.

A new rhesus macaque assembly and annotation for next-generation sequencing analyses.

Zimin AV, Cornish AS, Maudhoo MD, Gibbs RM, Zhang X, Pandey S, Meehan DT, Wipfler K, Bosinger SE, Johnson ZP, Tharp GK, Marçais G, Roberts M, Ferguson B, Fox HS, Treangen T, Salzberg SL, Yorke JA, Norgren RB Jr.

Biol Direct. 2014 Oct 14;9(1):20. doi: 10.1186/1745-6150-9-20.

2.

Genome typing of nonhuman primate models: implications for biomedical research.

Haus T, Ferguson B, Rogers J, Doxiadis G, Certa U, Rose NJ, Teepe R, Weinbauer GF, Roos C.

Trends Genet. 2014 Nov;30(11):482-7. doi: 10.1016/j.tig.2014.05.004. Epub 2014 Jun 18.

3.

Development and validation of a SNP-based assay for inferring the genetic ancestry of rhesus macaques (Macaca mulatta).

Kanthaswamy S, Johnson Z, Trask JS, Smith DG, Ramakrishnan R, Bahk J, Ng J, Wiseman R, Kubisch HM, Vallender EJ, Rogers J, Ferguson B.

Am J Primatol. 2014 Nov;76(11):1105-13. doi: 10.1002/ajp.22290. Epub 2014 Jun 20.

PMID:
24953496
4.

An empirical comparison of short tandem repeats (STRs) and single nucleotide polymorphisms (SNPs) for relatedness estimation in Chinese rhesus macaques (Macaca mulatta).

Ross CT, Weise JA, Bonnar S, Nolin D, Satkoski Trask J, Smith DG, Ferguson B, Ha J, Kubisch HM, Vinson A, Kanthaswamy S.

Am J Primatol. 2014 Apr;76(4):313-24. doi: 10.1002/ajp.22235. Epub 2013 Nov 22.

5.

The value of extended pedigrees for next-generation analysis of complex disease in the rhesus macaque.

Vinson A, Prongay K, Ferguson B.

ILAR J. 2013;54(2):91-105. doi: 10.1093/ilar/ilt041. Review. Erratum in: ILAR J. 2014;55(2):371.

6.

An effort to use human-based exome capture methods to analyze chimpanzee and macaque exomes.

Jin X, He M, Ferguson B, Meng Y, Ouyang L, Ren J, Mailund T, Sun F, Sun L, Shen J, Zhuo M, Song L, Wang J, Ling F, Zhu Y, Hvilsom C, Siegismund H, Liu X, Gong Z, Ji F, Wang X, Liu B, Zhang Y, Hou J, Wang J, Zhao H, Wang Y, Fang X, Zhang G, Wang J, Zhang X, Schierup MH, Du H, Wang J, Wang X.

PLoS One. 2012;7(7):e40637. doi: 10.1371/journal.pone.0040637. Epub 2012 Jul 27.

7.

The rhesus macaque is three times as diverse but more closely equivalent in damaging coding variation as compared to the human.

Yuan Q, Zhou Z, Lindell SG, Higley JD, Ferguson B, Thompson RC, Lopez JF, Suomi SJ, Baghal B, Baker M, Mash DC, Barr CS, Goldman D.

BMC Genet. 2012 Jun 29;13:52. doi: 10.1186/1471-2156-13-52.

8.

A single-nucleotide polymorphism in the EAP1 gene is associated with amenorrhea/oligomenorrhea in nonhuman primates.

Lomniczi A, Garcia-Rudaz C, Ramakrishnan R, Wilmot B, Khouangsathiene S, Ferguson B, Dissen GA, Ojeda SR.

Endocrinology. 2012 Jan;153(1):339-49. doi: 10.1210/en.2011-1540. Epub 2011 Nov 29.

9.

Mitochondrial DNA deletions and differential mitochondrial DNA content in Rhesus monkeys: implications for aging.

Mao P, Gallagher P, Nedungadi S, Manczak M, Shirendeb UP, Kohama SG, Ferguson B, Park BS, Reddy PH.

Biochim Biophys Acta. 2012 Feb;1822(2):111-9. doi: 10.1016/j.bbadis.2011.10.014. Epub 2011 Oct 28.

10.

Variable prevalence and functional diversity of the antiretroviral restriction factor TRIMCyp in Macaca fascicularis.

Dietrich EA, Brennan G, Ferguson B, Wiseman RW, O'Connor D, Hu SL.

J Virol. 2011 Oct;85(19):9956-63. doi: 10.1128/JVI.00097-11. Epub 2011 Jul 27.

11.

Resource brief: the National Non-Human Primate DNA Bank.

Ferguson B, Capitanio J, Folks T, Hotchkiss C, Johnson Z, Kean L, Kubisch HM, Lank S, Lyons L, Miller GM, Nylander J, O'Connor D, Vallender EJ, Wiseman R.

Methods. 2009 Sep;49(1):3-4. doi: 10.1016/j.ymeth.2009.07.011.

12.

Genetic tools for understanding the primate genome. Editorial.

Ferguson B, Miller GM.

Methods. 2009 Sep;49(1):1-2. doi: 10.1016/j.ymeth.2009.07.010. No abstract available.

PMID:
19706345
13.

MonkeySNP: a web portal for non-human primate single nucleotide polymorphisms.

Khouangsathiene S, Pearson C, Street S, Ferguson B, Dubay C.

Bioinformatics. 2008 Nov 15;24(22):2645-6. doi: 10.1093/bioinformatics/btn493. Epub 2008 Sep 16.

14.

Who is at risk? Population characterization of alcohol self-administration in nonhuman primates helps identify pathways to dependence.

Grant KA, Stafford J, Thiede A, Kiley C, Odagiri M, Ferguson B.

Alcohol Res Health. 2008;31(4):289-97. Review.

15.

Rhesus monkeys and humans share common susceptibility genes for age-related macular disease.

Francis PJ, Appukuttan B, Simmons E, Landauer N, Stoddard J, Hamon S, Ott J, Ferguson B, Klein M, Stout JT, Neuringer M.

Hum Mol Genet. 2008 Sep 1;17(17):2673-80. doi: 10.1093/hmg/ddn167. Epub 2008 Jun 4.

16.

Heterozygous embryonic stem cell lines derived from nonhuman primate parthenotes.

Dighe V, Clepper L, Pedersen D, Byrne J, Ferguson B, Gokhale S, Penedo MC, Wolf D, Mitalipov S.

Stem Cells. 2008 Mar;26(3):756-66. doi: 10.1634/stemcells.2007-0869. Epub 2008 Jan 10.

17.

Single nucleotide polymorphisms (SNPs) are highly conserved in rhesus (Macaca mulatta) and cynomolgus (Macaca fascicularis) macaques.

Street SL, Kyes RC, Grant R, Ferguson B.

BMC Genomics. 2007 Dec 31;8:480. doi: 10.1186/1471-2164-8-480.

18.

Identification of MHC class I sequences in Chinese-origin rhesus macaques.

Karl JA, Wiseman RW, Campbell KJ, Blasky AJ, Hughes AL, Ferguson B, Read DS, O'Connor DH.

Immunogenetics. 2008 Jan;60(1):37-46. Epub 2007 Dec 21.

19.

Demographic histories and patterns of linkage disequilibrium in Chinese and Indian rhesus macaques.

Hernandez RD, Hubisz MJ, Wheeler DA, Smith DG, Ferguson B, Rogers J, Nazareth L, Indap A, Bourquin T, McPherson J, Muzny D, Gibbs R, Nielsen R, Bustamante CD.

Science. 2007 Apr 13;316(5822):240-3.

20.

Evolutionary and biomedical insights from the rhesus macaque genome.

Rhesus Macaque Genome Sequencing and Analysis Consortium, Gibbs RA, Rogers J, Katze MG, Bumgarner R, Weinstock GM, Mardis ER, Remington KA, Strausberg RL, Venter JC, Wilson RK, Batzer MA, Bustamante CD, Eichler EE, Hahn MW, Hardison RC, Makova KD, Miller W, Milosavljevic A, Palermo RE, Siepel A, Sikela JM, Attaway T, Bell S, Bernard KE, Buhay CJ, Chandrabose MN, Dao M, Davis C, Delehaunty KD, Ding Y, Dinh HH, Dugan-Rocha S, Fulton LA, Gabisi RA, Garner TT, Godfrey J, Hawes AC, Hernandez J, Hines S, Holder M, Hume J, Jhangiani SN, Joshi V, Khan ZM, Kirkness EF, Cree A, Fowler RG, Lee S, Lewis LR, Li Z, Liu YS, Moore SM, Muzny D, Nazareth LV, Ngo DN, Okwuonu GO, Pai G, Parker D, Paul HA, Pfannkoch C, Pohl CS, Rogers YH, Ruiz SJ, Sabo A, Santibanez J, Schneider BW, Smith SM, Sodergren E, Svatek AF, Utterback TR, Vattathil S, Warren W, White CS, Chinwalla AT, Feng Y, Halpern AL, Hillier LW, Huang X, Minx P, Nelson JO, Pepin KH, Qin X, Sutton GG, Venter E, Walenz BP, Wallis JW, Worley KC, Yang SP, Jones SM, Marra MA, Rocchi M, Schein JE, Baertsch R, Clarke L, Csürös M, Glasscock J, Harris RA, Havlak P, Jackson AR, Jiang H, Liu Y, Messina DN, Shen Y, Song HX, Wylie T, Zhang L, Birney E, Han K, Konkel MK, Lee J, Smit AF, Ullmer B, Wang H, Xing J, Burhans R, Cheng Z, Karro JE, Ma J, Raney B, She X, Cox MJ, Demuth JP, Dumas LJ, Han SG, Hopkins J, Karimpour-Fard A, Kim YH, Pollack JR, Vinar T, Addo-Quaye C, Degenhardt J, Denby A, Hubisz MJ, Indap A, Kosiol C, Lahn BT, Lawson HA, Marklein A, Nielsen R, Vallender EJ, Clark AG, Ferguson B, Hernandez RD, Hirani K, Kehrer-Sawatzki H, Kolb J, Patil S, Pu LL, Ren Y, Smith DG, Wheeler DA, Schenck I, Ball EV, Chen R, Cooper DN, Giardine B, Hsu F, Kent WJ, Lesk A, Nelson DL, O'brien WE, Prüfer K, Stenson PD, Wallace JC, Ke H, Liu XM, Wang P, Xiang AP, Yang F, Barber GP, Haussler D, Karolchik D, Kern AD, Kuhn RM, Smith KE, Zwieg AS.

Science. 2007 Apr 13;316(5822):222-34.

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