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Results: 1 to 20 of 122

1.

Epistatic interactions determine the mutational pathways and coexistence of lineages in clonal Escherichia coli populations.

Maharjan RP, Ferenci T.

Evolution. 2013 Sep;67(9):2762-8. doi: 10.1111/evo.12137. Epub 2013 May 22.

PMID:
24033182
[PubMed - indexed for MEDLINE]
2.

The form of a trade-off determines the response to competition.

Maharjan R, Nilsson S, Sung J, Haynes K, Beardmore RE, Hurst LD, Ferenci T, Gudelj I.

Ecol Lett. 2013 Oct;16(10):1267-76. doi: 10.1111/ele.12159. Epub 2013 Jul 31.

PMID:
23902419
[PubMed - indexed for MEDLINE]
3.

The nature of laboratory domestication changes in freshly isolated Escherichia coli strains.

Eydallin G, Ryall B, Maharjan R, Ferenci T.

Environ Microbiol. 2014 Mar;16(3):813-28. doi: 10.1111/1462-2920.12208. Epub 2013 Jul 29.

PMID:
23889812
[PubMed - indexed for MEDLINE]
4.

A case of adaptation through a mutation in a tandem duplication during experimental evolution in Escherichia coli.

Maharjan RP, Gaffé J, Plucain J, Schliep M, Wang L, Feng L, Tenaillon O, Ferenci T, Schneider D.

BMC Genomics. 2013 Jul 3;14:441. doi: 10.1186/1471-2164-14-441.

PMID:
23822838
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

A design-constraint trade-off underpins the diversity in ecologically important traits in species Escherichia coli.

Phan K, Ferenci T.

ISME J. 2013 Oct;7(10):2034-43. doi: 10.1038/ismej.2013.82. Epub 2013 May 16.

PMID:
23677010
[PubMed - indexed for MEDLINE]
6.

Daily evolution of insulin sensitivity variability with respect to diagnosis in the critically ill.

Ferenci T, Benyó B, Kovács L, Fisk L, Shaw GM, Chase JG.

PLoS One. 2013;8(2):e57119. doi: 10.1371/journal.pone.0057119. Epub 2013 Feb 21.

PMID:
23437328
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Mutation accumulation and fitness in mutator subpopulations of Escherichia coli.

Maharjan RP, Liu B, Li Y, Reeves PR, Wang L, Ferenci T.

Biol Lett. 2012 Dec 5;9(1):20120961. doi: 10.1098/rsbl.2012.0961. Print 2013 Feb 23.

PMID:
23221876
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

The basis of antagonistic pleiotropy in hfq mutations that have opposite effects on fitness at slow and fast growth rates.

Maharjan R, McKenzie C, Yeung A, Ferenci T.

Heredity (Edinb). 2013 Jan;110(1):10-8. doi: 10.1038/hdy.2012.46. Epub 2012 Nov 21.

PMID:
23169561
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

The identification of global patterns and unique signatures of proteins across 14 environments using outer membrane proteomics of bacteria.

Schliep M, Ryall B, Ferenci T.

Mol Biosyst. 2012 Nov;8(11):3017-27. doi: 10.1039/c2mb25212k. Epub 2012 Sep 6.

PMID:
22956018
[PubMed - indexed for MEDLINE]
10.

Culture history and population heterogeneity as determinants of bacterial adaptation: the adaptomics of a single environmental transition.

Ryall B, Eydallin G, Ferenci T.

Microbiol Mol Biol Rev. 2012 Sep;76(3):597-625. doi: 10.1128/MMBR.05028-11. Review.

PMID:
22933562
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

The multiplicity of divergence mechanisms in a single evolving population.

Maharjan RP, Ferenci T, Reeves PR, Li Y, Liu B, Wang L.

Genome Biol. 2012 Jun 8;13(6):R41. doi: 10.1186/gb-2012-13-6-r41.

PMID:
22682524
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

The uncertain consequences of transferring bacterial strains between laboratories - rpoS instability as an example.

Spira B, de Almeida Toledo R, Maharjan RP, Ferenci T.

BMC Microbiol. 2011 Nov 8;11:248. doi: 10.1186/1471-2180-11-248.

PMID:
22067413
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

The constancy of global regulation across a species: the concentrations of ppGpp and RpoS are strain-specific in Escherichia coli.

Ferenci T, Galbiati HF, Betteridge T, Phan K, Spira B.

BMC Microbiol. 2011 Mar 25;11:62. doi: 10.1186/1471-2180-11-62.

PMID:
21439067
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Insertion sequence-driven evolution of Escherichia coli in chemostats.

Gaffé J, McKenzie C, Maharjan RP, Coursange E, Ferenci T, Schneider D.

J Mol Evol. 2011 Apr;72(4):398-412. doi: 10.1007/s00239-011-9439-2. Epub 2011 Mar 12.

PMID:
21399911
[PubMed - indexed for MEDLINE]
15.

Differences in the laboratory parameters of obese and healthy Hungarian children and their use in automatic classification.

Ferenci T, Kovacs L, Almassy Z, Szilagyi L, Benyo B, Benyo Z.

Conf Proc IEEE Eng Med Biol Soc. 2010;2010:3883-6. doi: 10.1109/IEMBS.2010.5627672.

PMID:
21097074
[PubMed - indexed for MEDLINE]
16.

Molecular and evolutionary bases of within-patient genotypic and phenotypic diversity in Escherichia coli extraintestinal infections.

Levert M, Zamfir O, Clermont O, Bouvet O, Lespinats S, Hipeaux MC, Branger C, Picard B, Saint-Ruf C, Norel F, Balliau T, Zivy M, Le Nagard H, Cruveiller S, Chane-Woon-Ming B, Nilsson S, Gudelj I, Phan K, Ferenci T, Tenaillon O, Denamur E.

PLoS Pathog. 2010 Sep 30;6(9):e1001125. doi: 10.1371/journal.ppat.1001125. Erratum in: PLoS Pathog. 2011 Jun;7(6). doi:10.1371/annotation/700dcb3b-3475-49a1-9064-d9d070cda7be. Cruvellier, Stéphane[corrected to Cruveiller, Stéphane].

PMID:
20941353
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Divergence involving global regulatory gene mutations in an Escherichia coli population evolving under phosphate limitation.

Wang L, Spira B, Zhou Z, Feng L, Maharjan RP, Li X, Li F, McKenzie C, Reeves PR, Ferenci T.

Genome Biol Evol. 2010 Jul 16;2:478-87. doi: 10.1093/gbe/evq035.

PMID:
20639316
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

An integrative approach to understanding microbial diversity: from intracellular mechanisms to community structure.

Gudelj I, Weitz JS, Ferenci T, Claire Horner-Devine M, Marx CJ, Meyer JR, Forde SE.

Ecol Lett. 2010 Sep;13(9):1073-84. doi: 10.1111/j.1461-0248.2010.01507.x. Epub 2010 Jun 22.

PMID:
20576029
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Genomic identification of a novel mutation in hfq that provides multiple benefits in evolving glucose-limited populations of Escherichia coli.

Maharjan R, Zhou Z, Ren Y, Li Y, Gaffé J, Schneider D, McKenzie C, Reeves PR, Ferenci T, Wang L.

J Bacteriol. 2010 Sep;192(17):4517-21. doi: 10.1128/JB.00368-10. Epub 2010 Jun 11.

PMID:
20543067
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Genomic sequencing reveals regulatory mutations and recombinational events in the widely used MC4100 lineage of Escherichia coli K-12.

Ferenci T, Zhou Z, Betteridge T, Ren Y, Liu Y, Feng L, Reeves PR, Wang L.

J Bacteriol. 2009 Jun;191(12):4025-9. doi: 10.1128/JB.00118-09. Epub 2009 Apr 17.

PMID:
19376874
[PubMed - indexed for MEDLINE]
Free PMC Article

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