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Results: 1 to 20 of 60

1.

A supervised learning approach to the ensemble clustering of genes.

Rider AK, Siwo G, Emrich SJ, Ferdig MT, Chawla NV.

Int J Data Min Bioinform. 2014;9(2):199-219.

PMID:
24864378
[PubMed - indexed for MEDLINE]
2.

A HECT ubiquitin-protein ligase as a novel candidate gene for altered quinine and quinidine responses in Plasmodium falciparum.

Sanchez CP, Liu CH, Mayer S, Nurhasanah A, Cyrklaff M, Mu J, Ferdig MT, Stein WD, Lanzer M.

PLoS Genet. 2014 May 15;10(5):e1004382. doi: 10.1371/journal.pgen.1004382. eCollection 2014 May.

PMID:
24830312
[PubMed - in process]
Free PMC Article
3.

Expression of the essential Kinase PfCDPK1 from Plasmodium falciparum in Toxoplasma gondii facilitates the discovery of novel antimalarial drugs.

Gaji RY, Checkley L, Reese ML, Ferdig MT, Arrizabalaga G.

Antimicrob Agents Chemother. 2014 May;58(5):2598-607. doi: 10.1128/AAC.02261-13. Epub 2014 Feb 18.

PMID:
24550330
[PubMed - in process]
4.

Metabolic QTL analysis links chloroquine resistance in Plasmodium falciparum to impaired hemoglobin catabolism.

Lewis IA, Wacker M, Olszewski KL, Cobbold SA, Baska KS, Tan A, Ferdig MT, Llinás M.

PLoS Genet. 2014 Jan;10(1):e1004085. doi: 10.1371/journal.pgen.1004085. Epub 2014 Jan 2.

PMID:
24391526
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

A process similar to autophagy is associated with cytocidal chloroquine resistance in Plasmodium falciparum.

Gaviria D, Paguio MF, Turnbull LB, Tan A, Siriwardana A, Ghosh D, Ferdig MT, Sinai AP, Roepe PD.

PLoS One. 2013 Nov 20;8(11):e79059. doi: 10.1371/journal.pone.0079059. eCollection 2013.

PMID:
24278114
[PubMed - in process]
Free PMC Article
6.

An apicoplast localized ubiquitylation system is required for the import of nuclear-encoded plastid proteins.

Agrawal S, Chung DW, Ponts N, van Dooren GG, Prudhomme J, Brooks CF, Rodrigues EM, Tan JC, Ferdig MT, Striepen B, Le Roch KG.

PLoS Pathog. 2013;9(6):e1003426. doi: 10.1371/journal.ppat.1003426. Epub 2013 Jun 13.

PMID:
23785288
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Direct evidence for the adaptive role of copy number variation on antifolate susceptibility in Plasmodium falciparum.

Heinberg A, Siu E, Stern C, Lawrence EA, Ferdig MT, Deitsch KW, Kirkman LA.

Mol Microbiol. 2013 May;88(4):702-12. doi: 10.1111/mmi.12162. Epub 2013 Apr 24.

PMID:
23347134
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Mutation in the Plasmodium falciparum CRT protein determines the stereospecific activity of antimalarial cinchona alkaloids.

Griffin CE, Hoke JM, Samarakoon U, Duan J, Mu J, Ferdig MT, Warhurst DC, Cooper RA.

Antimicrob Agents Chemother. 2012 Oct;56(10):5356-64. doi: 10.1128/AAC.05667-11. Epub 2012 Aug 6.

PMID:
22869567
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Analysis of Plasmodium falciparum diversity in natural infections by deep sequencing.

Manske M, Miotto O, Campino S, Auburn S, Almagro-Garcia J, Maslen G, O'Brien J, Djimde A, Doumbo O, Zongo I, Ouedraogo JB, Michon P, Mueller I, Siba P, Nzila A, Borrmann S, Kiara SM, Marsh K, Jiang H, Su XZ, Amaratunga C, Fairhurst R, Socheat D, Nosten F, Imwong M, White NJ, Sanders M, Anastasi E, Alcock D, Drury E, Oyola S, Quail MA, Turner DJ, Ruano-Rubio V, Jyothi D, Amenga-Etego L, Hubbart C, Jeffreys A, Rowlands K, Sutherland C, Roper C, Mangano V, Modiano D, Tan JC, Ferdig MT, Amambua-Ngwa A, Conway DJ, Takala-Harrison S, Plowe CV, Rayner JC, Rockett KA, Clark TG, Newbold CI, Berriman M, MacInnis B, Kwiatkowski DP.

Nature. 2012 Jul 19;487(7407):375-9. doi: 10.1038/nature11174.

PMID:
22722859
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Quantification of multiple infections of Plasmodium falciparum in vitro.

Wacker MA, Turnbull LB, Walker LA, Mount MC, Ferdig MT.

Malar J. 2012 May 30;11:180. doi: 10.1186/1475-2875-11-180.

PMID:
22646748
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

A major genome region underlying artemisinin resistance in malaria.

Cheeseman IH, Miller BA, Nair S, Nkhoma S, Tan A, Tan JC, Al Saai S, Phyo AP, Moo CL, Lwin KM, McGready R, Ashley E, Imwong M, Stepniewska K, Yi P, Dondorp AM, Mayxay M, Newton PN, White NJ, Nosten F, Ferdig MT, Anderson TJ.

Science. 2012 Apr 6;336(6077):79-82. doi: 10.1126/science.1215966.

PMID:
22491853
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Symmetric Epistasis Estimation (SEE) and its application to dissecting interaction map of Plasmodium falciparum.

Huang Y, Siwo G, Wuchty S, Ferdig MT, Przytycka TM.

Mol Biosyst. 2012 Apr;8(5):1544-52. doi: 10.1039/c2mb05333k. Epub 2012 Mar 15.

PMID:
22419061
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Differential association of Plasmodium falciparum Na+/H+ exchanger polymorphism and quinine responses in field- and culture-adapted isolates of Plasmodium falciparum.

Pelleau S, Bertaux L, Briolant S, Ferdig MT, Sinou V, Pradines B, Parzy D, Jambou R.

Antimicrob Agents Chemother. 2011 Dec;55(12):5834-41. doi: 10.1128/AAC.00477-11. Epub 2011 Sep 26.

PMID:
21947391
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

The landscape of inherited and de novo copy number variants in a Plasmodium falciparum genetic cross.

Samarakoon U, Gonzales JM, Patel JJ, Tan A, Checkley L, Ferdig MT.

BMC Genomics. 2011 Sep 22;12:457. doi: 10.1186/1471-2164-12-457.

PMID:
21936954
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Shared molecular strategies of the malaria parasite P. falciparum and the human virus HIV-1.

Wuchty S, Siwo GH, Ferdig MT.

Mol Cell Proteomics. 2011 Oct;10(10):M111.009035. doi: 10.1074/mcp.M111.009035. Epub 2011 May 17.

PMID:
21586753
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

An optimized microarray platform for assaying genomic variation in Plasmodium falciparum field populations.

Tan JC, Miller BA, Tan A, Patel JJ, Cheeseman IH, Anderson TJ, Manske M, Maslen G, Kwiatkowski DP, Ferdig MT.

Genome Biol. 2011;12(4):R35. doi: 10.1186/gb-2011-12-4-r35. Epub 2011 Apr 8.

PMID:
21477297
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

High-throughput 454 resequencing for allele discovery and recombination mapping in Plasmodium falciparum.

Samarakoon U, Regier A, Tan A, Desany BA, Collins B, Tan JC, Emrich SJ, Ferdig MT.

BMC Genomics. 2011 Feb 17;12:116. doi: 10.1186/1471-2164-12-116.

PMID:
21324207
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Design, synthesis, and study of a mycobactin-artemisinin conjugate that has selective and potent activity against tuberculosis and malaria.

Miller MJ, Walz AJ, Zhu H, Wu C, Moraski G, Möllmann U, Tristani EM, Crumbliss AL, Ferdig MT, Checkley L, Edwards RL, Boshoff HI.

J Am Chem Soc. 2011 Feb 23;133(7):2076-9. doi: 10.1021/ja109665t. Epub 2011 Jan 28.

PMID:
21275374
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Quantitative trait loci mapping reveals candidate pathways regulating cell cycle duration in Plasmodium falciparum.

Reilly Ayala HB, Wacker MA, Siwo G, Ferdig MT.

BMC Genomics. 2010 Oct 18;11:577. doi: 10.1186/1471-2164-11-577.

PMID:
20955606
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Viral organization of human proteins.

Wuchty S, Siwo G, Ferdig MT.

PLoS One. 2010 Aug 25;5(8):e11796. doi: 10.1371/journal.pone.0011796.

PMID:
20827298
[PubMed - indexed for MEDLINE]
Free PMC Article

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