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Results: 1 to 20 of 40

1.

Genome Sequence of Candidatus Nitrososphaera evergladensis from Group I.1b Enriched from Everglades Soil Reveals Novel Genomic Features of the Ammonia-Oxidizing Archaea.

Zhalnina KV, Dias R, Leonard MT, Dorr de Quadros P, Camargo FA, Drew JC, Farmerie WG, Daroub SH, Triplett EW.

PLoS One. 2014 Jul 7;9(7):e101648. doi: 10.1371/journal.pone.0101648. eCollection 2014.

PMID:
24999826
[PubMed - in process]
Free PMC Article
2.

Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication.

Wu GA, Prochnik S, Jenkins J, Salse J, Hellsten U, Murat F, Perrier X, Ruiz M, Scalabrin S, Terol J, Takita MA, Labadie K, Poulain J, Couloux A, Jabbari K, Cattonaro F, Del Fabbro C, Pinosio S, Zuccolo A, Chapman J, Grimwood J, Tadeo FR, Estornell LH, Muñoz-Sanz JV, Ibanez V, Herrero-Ortega A, Aleza P, Pérez-Pérez J, Ramón D, Brunel D, Luro F, Chen C, Farmerie WG, Desany B, Kodira C, Mohiuddin M, Harkins T, Fredrikson K, Burns P, Lomsadze A, Borodovsky M, Reforgiato G, Freitas-Astúa J, Quetier F, Navarro L, Roose M, Wincker P, Schmutz J, Morgante M, Machado MA, Talon M, Jaillon O, Ollitrault P, Gmitter F, Rokhsar D.

Nat Biotechnol. 2014 Jul;32(7):656-62. doi: 10.1038/nbt.2906. Epub 2014 Jun 8.

PMID:
24908277
[PubMed - in process]
3.

IgM Repertoire Biodiversity is Reduced in HIV-1 Infection and Systemic Lupus Erythematosus.

Yin L, Hou W, Liu L, Cai Y, Wallet MA, Gardner BP, Chang K, Lowe AC, Rodriguez CA, Sriaroon P, Farmerie WG, Sleasman JW, Goodenow MM.

Front Immunol. 2013 Nov 15;4:373. doi: 10.3389/fimmu.2013.00373. eCollection 2013.

PMID:
24298273
[PubMed]
Free PMC Article
4.

Complete Genome Sequence of Carnobacterium gilichinskyi Strain WN1359T (DSM 27470T).

Leonard MT, Panayotova N, Farmerie WG, Triplett EW, Nicholson WL.

Genome Announc. 2013 Nov 27;1(6). pii: e00985-13. doi: 10.1128/genomeA.00985-13.

PMID:
24285647
[PubMed]
Free PMC Article
5.

Complete Genome Sequence of Serratia liquefaciens Strain ATCC 27592.

Nicholson WL, Leonard MT, Fajardo-Cavazos P, Panayotova N, Farmerie WG, Triplett EW, Schuerger AC.

Genome Announc. 2013 Aug 15;1(4). pii: e00548-13. doi: 10.1128/genomeA.00548-13.

PMID:
23950115
[PubMed]
Free PMC Article
6.

High-resolution deep sequencing reveals biodiversity, population structure, and persistence of HIV-1 quasispecies within host ecosystems.

Yin L, Liu L, Sun Y, Hou W, Lowe AC, Gardner BP, Salemi M, Williams WB, Farmerie WG, Sleasman JW, Goodenow MM.

Retrovirology. 2012 Dec 17;9:108. doi: 10.1186/1742-4690-9-108.

PMID:
23244298
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Global gene expression of the inner cell mass and trophectoderm of the bovine blastocyst.

Ozawa M, Sakatani M, Yao J, Shanker S, Yu F, Yamashita R, Wakabayashi S, Nakai K, Dobbs KB, Sudano MJ, Farmerie WG, Hansen PJ.

BMC Dev Biol. 2012 Nov 6;12:33. doi: 10.1186/1471-213X-12-33.

PMID:
23126590
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Spaceflight transcriptomes: unique responses to a novel environment.

Paul AL, Zupanska AK, Ostrow DT, Zhang Y, Sun Y, Li JL, Shanker S, Farmerie WG, Amalfitano CE, Ferl RJ.

Astrobiology. 2012 Jan;12(1):40-56. doi: 10.1089/ast.2011.0696. Epub 2012 Jan 5.

PMID:
22221117
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

A large-scale benchmark study of existing algorithms for taxonomy-independent microbial community analysis.

Sun Y, Cai Y, Huse SM, Knight R, Farmerie WG, Wang X, Mai V.

Brief Bioinform. 2012 Jan;13(1):107-21. doi: 10.1093/bib/bbr009. Epub 2011 Apr 27.

PMID:
21525143
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Genome sequences of Mycoplasma alligatoris A21JP2T and Mycoplasma crocodyli MP145T.

Brown DR, Farmerie WG, May M, Benders GA, Durkin AS, Hlavinka K, Hostetler J, Jackson J, Johnson J, Miller RH, Paralanov V, Radune D, Szczypinski B, Glass JI.

J Bacteriol. 2011 Jun;193(11):2892-3. doi: 10.1128/JB.00309-11. Epub 2011 Apr 1.

PMID:
21460083
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

The genome of the fire ant Solenopsis invicta.

Wurm Y, Wang J, Riba-Grognuz O, Corona M, Nygaard S, Hunt BG, Ingram KK, Falquet L, Nipitwattanaphon M, Gotzek D, Dijkstra MB, Oettler J, Comtesse F, Shih CJ, Wu WJ, Yang CC, Thomas J, Beaudoing E, Pradervand S, Flegel V, Cook ED, Fabbretti R, Stockinger H, Long L, Farmerie WG, Oakey J, Boomsma JJ, Pamilo P, Yi SV, Heinze J, Goodisman MA, Farinelli L, Harshman K, Hulo N, Cerutti L, Xenarios I, Shoemaker D, Keller L.

Proc Natl Acad Sci U S A. 2011 Apr 5;108(14):5679-84. doi: 10.1073/pnas.1009690108. Epub 2011 Jan 31.

PMID:
21282665
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Characterization of San Miguel sea lion virus populations using pyrosequencing-based methods.

Wellehan JF Jr, Yu F, Venn-Watson SK, Jensen ED, Smith CR, Farmerie WG, Nollens HH.

Infect Genet Evol. 2010 Mar;10(2):254-60. doi: 10.1016/j.meegid.2009.11.013. Epub 2009 Dec 1.

PMID:
19931646
[PubMed - indexed for MEDLINE]
13.

A rice kinase-protein interaction map.

Ding X, Richter T, Chen M, Fujii H, Seo YS, Xie M, Zheng X, Kanrar S, Stevenson RA, Dardick C, Li Y, Jiang H, Zhang Y, Yu F, Bartley LE, Chern M, Bart R, Chen X, Zhu L, Farmerie WG, Gribskov M, Zhu JK, Fromm ME, Ronald PC, Song WY.

Plant Physiol. 2009 Mar;149(3):1478-92. doi: 10.1104/pp.108.128298. Epub 2008 Dec 24.

PMID:
19109415
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome.

Novaes E, Drost DR, Farmerie WG, Pappas GJ Jr, Grattapaglia D, Sederoff RR, Kirst M.

BMC Genomics. 2008 Jun 30;9:312. doi: 10.1186/1471-2164-9-312.

PMID:
18590545
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Construction of a robust microarray from a non-model species (largemouth bass) using pyrosequencing technology.

Garcia-Reyero N, Griffitt RJ, Liu L, Kroll KJ, Farmerie WG, Barber DS, Denslow ND.

J Fish Biol. 2008 Jun 28;72(9):2354-2376.

PMID:
19936325
[PubMed]
Free PMC Article
16.

Pyrosequencing enumerates and contrasts soil microbial diversity.

Roesch LF, Fulthorpe RR, Riva A, Casella G, Hadwin AK, Kent AD, Daroub SH, Camargo FA, Farmerie WG, Triplett EW.

ISME J. 2007 Aug;1(4):283-90. Epub 2007 Jul 5.

PMID:
18043639
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Rapid and accurate pyrosequencing of angiosperm plastid genomes.

Moore MJ, Dhingra A, Soltis PS, Shaw R, Farmerie WG, Folta KM, Soltis DE.

BMC Plant Biol. 2006 Aug 25;6:17.

PMID:
16934154
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Floral gene resources from basal angiosperms for comparative genomics research.

Albert VA, Soltis DE, Carlson JE, Farmerie WG, Wall PK, Ilut DC, Solow TM, Mueller LA, Landherr LL, Hu Y, Buzgo M, Kim S, Yoo MJ, Frohlich MW, Perl-Treves R, Schlarbaum SE, Bliss BJ, Zhang X, Tanksley SD, Oppenheimer DG, Soltis PS, Ma H, DePamphilis CW, Leebens-Mack JH.

BMC Plant Biol. 2005 Mar 30;5:5.

PMID:
15799777
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Spreading factors of Mycoplasma alligatoris, a flesh-eating mycoplasma.

Brown DR, Zacher LA, Farmerie WG.

J Bacteriol. 2004 Jun;186(12):3922-7.

PMID:
15175306
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Capillary DNA sequencing: maximizing the sequence output.

Almira EC, Panayotova N, Farmerie WG.

J Biomol Tech. 2003 Dec;14(4):270-7.

PMID:
14715885
[PubMed - indexed for MEDLINE]
Free PMC Article

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