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Results: 1 to 20 of 60

1.

Evasion of siRNA-directed antiviral silencing in Musa acuminata persistently infected with six distinct banana streak pararetroviruses.

Rajeswaran R, Seguin J, Chabannes M, Duroy PO, Laboureau N, Farinelli L, Iskra-Caruana ML, Pooggin MM.

J Virol. 2014 Jul 23. pii: JVI.01496-14. [Epub ahead of print]

PMID:
25056897
[PubMed - as supplied by publisher]
2.

Genome and transcriptome sequencing identifies breeding targets in the orphan crop tef (Eragrostis tef).

Cannarozzi G, Plaza-Wüthrich S, Esfeld K, Larti S, Wilson YS, Girma D, de Castro E, Chanyalew S, Blösch R, Farinelli L, Lyons E, Schneider M, Falquet L, Kuhlemeier C, Assefa K, Tadele Z.

BMC Genomics. 2014 Jul 9;15(1):581. doi: 10.1186/1471-2164-15-581.

PMID:
25007843
[PubMed - in process]
Free Article
3.

Sugarcane genome sequencing by methylation filtration provides tools for genomic research in the genus Saccharum.

Grativol C, Regulski M, Bertalan M, McCombie WR, da Silva FR, Zerlotini Neto A, Vicentini R, Farinelli L, Hemerly AS, Martienssen RA, Ferreira PC.

Plant J. 2014 Jul;79(1):162-172. doi: 10.1111/tpj.12539. Epub 2014 Jun 17.

PMID:
24773339
[PubMed - as supplied by publisher]
4.

Domains of genome-wide gene expression dysregulation in Down's syndrome.

Letourneau A, Santoni FA, Bonilla X, Sailani MR, Gonzalez D, Kind J, Chevalier C, Thurman R, Sandstrom RS, Hibaoui Y, Garieri M, Popadin K, Falconnet E, Gagnebin M, Gehrig C, Vannier A, Guipponi M, Farinelli L, Robyr D, Migliavacca E, Borel C, Deutsch S, Feki A, Stamatoyannopoulos JA, Herault Y, van Steensel B, Guigo R, Antonarakis SE.

Nature. 2014 Apr 17;508(7496):345-50. doi: 10.1038/nature13200.

PMID:
24740065
[PubMed - indexed for MEDLINE]
5.

Implication of sperm RNAs in transgenerational inheritance of the effects of early trauma in mice.

Gapp K, Jawaid A, Sarkies P, Bohacek J, Pelczar P, Prados J, Farinelli L, Miska E, Mansuy IM.

Nat Neurosci. 2014 May;17(5):667-9. doi: 10.1038/nn.3695. Epub 2014 Apr 13.

PMID:
24728267
[PubMed - indexed for MEDLINE]
6.

Duality of the murine CD8 compartment.

Genolet R, Leignadier J, Østerås M, Farinelli L, Stevenson BJ, Luescher IF.

Proc Natl Acad Sci U S A. 2014 Mar 18;111(11):E1007-15. doi: 10.1073/pnas.1317847111. Epub 2014 Mar 4.

PMID:
24594598
[PubMed - indexed for MEDLINE]
7.

A genomic perspective on a new bacterial genus and species from the Alcaligenaceae family, Basilea psittacipulmonis.

Whiteson KL, Hernandez D, Lazarevic V, Gaia N, Farinelli L, François P, Pilo P, Frey J, Schrenzel J.

BMC Genomics. 2014 Mar 1;15:169. doi: 10.1186/1471-2164-15-169.

PMID:
24581117
[PubMed - in process]
Free PMC Article
8.

De novo reconstruction of consensus master genomes of plant RNA and DNA viruses from siRNAs.

Seguin J, Rajeswaran R, Malpica-López N, Martin RR, Kasschau K, Dolja VV, Otten P, Farinelli L, Pooggin MM.

PLoS One. 2014 Feb 11;9(2):e88513. doi: 10.1371/journal.pone.0088513. eCollection 2014.

PMID:
24523907
[PubMed - in process]
Free PMC Article
9.

Whole-Genome Shotgun Sequence of Bacillus amyloliquefaciens Strain UASWS BA1, a Bacterium Antagonistic to Plant Pathogenic Fungi.

Lefort F, Calmin G, Pelleteret P, Farinelli L, Osteras M, Crovadore J.

Genome Announc. 2014 Feb 6;2(1). pii: e00016-14. doi: 10.1128/genomeA.00016-14.

PMID:
24503983
[PubMed]
Free PMC Article
10.

Comprehensive metagenomic analysis of glioblastoma reveals absence of known virus despite antiviral-like type I interferon gene response.

Cosset E, Petty TJ, Dutoit V, Cordey S, Padioleau I, Otten-Hernandez P, Farinelli L, Kaiser L, Bruyère-Cerdan P, Tirefort D, Amar El-Dusouqui S, Nayernia Z, Krause KH, Zdobnov EM, Dietrich PY, Rigal E, Preynat-Seauve O.

Int J Cancer. 2014 Sep 15;135(6):1381-9. doi: 10.1002/ijc.28670. Epub 2014 May 8.

PMID:
24347514
[PubMed - in process]
11.

MISIS: a bioinformatics tool to view and analyze maps of small RNAs derived from viruses and genomic loci generating multiple small RNAs.

Seguin J, Otten P, Baerlocher L, Farinelli L, Pooggin MM.

J Virol Methods. 2014 Jan;195:120-2. doi: 10.1016/j.jviromet.2013.10.013. Epub 2013 Oct 14.

PMID:
24134945
[PubMed - indexed for MEDLINE]
12.

De novo finished 2.8 Mbp Staphylococcus aureus genome assembly from 100 bp short and long range paired-end reads.

Hernandez D, Tewhey R, Veyrieras JB, Farinelli L, Østerås M, François P, Schrenzel J.

Bioinformatics. 2014 Jan 1;30(1):40-9. doi: 10.1093/bioinformatics/btt590. Epub 2013 Oct 15.

PMID:
24130309
[PubMed - indexed for MEDLINE]
13.

Extreme diversification of the mating type-high-mobility group (MATA-HMG) gene family in a plant-associated arbuscular mycorrhizal fungus.

Riley R, Charron P, Idnurm A, Farinelli L, Dalpé Y, Martin F, Corradi N.

New Phytol. 2014 Jan;201(1):254-68. doi: 10.1111/nph.12462. Epub 2013 Aug 27.

PMID:
24033097
[PubMed - indexed for MEDLINE]
14.

Analysis of the Elodea nuttallii transcriptome in response to mercury and cadmium pollution: development of sensitive tools for rapid ecotoxicological testing.

Regier N, Baerlocher L, Münsterkötter M, Farinelli L, Cosio C.

Environ Sci Technol. 2013 Aug 6;47(15):8825-34. doi: 10.1021/es401082h. Epub 2013 Jul 25.

PMID:
23802634
[PubMed - indexed for MEDLINE]
15.

Re: Errors in the editorial by Christensen and Giovannoni [HERVs: have we been here before? MSJ 18(12) 1670-1672].

Perron H, Germi R, Bernard C, Garcia-Montojo M, Deluen C, Farinelli L, Faucard R, Veas F, Stefas I, Fabriek BO, Van-Horssen J, Vander-Valk P, Gerdil C, Mancuso R, Saresella M, Clerici M, Marcel S, Creange A, Cavaretta R, Caputo D, Arru G, Morand P, Lang AB, Sotgiu S, Ruprecht K, Rieckmann P, Villoslada P, Chofflon M, Boucraut J, Pelletier J, Hartung HP.

Mult Scler. 2013 May;19(6):831-2. doi: 10.1177/1352458513485150. No abstract available.

PMID:
23658240
[PubMed - in process]
16.

Multiplex targeted high-throughput sequencing for Mendelian cardiac disorders.

Fokstuen S, Makrythanasis P, Nikolaev S, Santoni F, Robyr D, Munoz A, Bevillard J, Farinelli L, Iseli C, Antonarakis SE, Blouin JL.

Clin Genet. 2014 Apr;85(4):365-70. doi: 10.1111/cge.12168. Epub 2013 May 13.

PMID:
23590259
[PubMed - in process]
17.

Whole-Genome Shotgun Sequence of Pseudomonas viridiflava, a Bacterium Species Pathogenic to Ararabidopsis thaliana.

Lefort F, Calmin G, Crovadore J, Osteras M, Farinelli L.

Genome Announc. 2013 Jan;1(1). pii: e00116-12. doi: 10.1128/genomeA.00116-12. Epub 2013 Jan 24.

PMID:
23405356
[PubMed - as supplied by publisher]
Free PMC Article
18.

Extremely reduced levels of heterozygosity in the vertebrate pathogen Encephalitozoon cuniculi.

Selman M, Sak B, Kváč M, Farinelli L, Weiss LM, Corradi N.

Eukaryot Cell. 2013 Apr;12(4):496-502. doi: 10.1128/EC.00307-12. Epub 2013 Feb 2.

PMID:
23376943
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Highly diverse TCRα chain repertoire of pre-immune CD8⁺ T cells reveals new insights in gene recombination.

Genolet R, Stevenson BJ, Farinelli L, Osterås M, Luescher IF.

EMBO J. 2012 Nov 5;31(21):4247-8. doi: 10.1038/emboj.2012.277. No abstract available.

PMID:
23128857
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Primary and secondary siRNAs in geminivirus-induced gene silencing.

Aregger M, Borah BK, Seguin J, Rajeswaran R, Gubaeva EG, Zvereva AS, Windels D, Vazquez F, Blevins T, Farinelli L, Pooggin MM.

PLoS Pathog. 2012 Sep;8(9):e1002941. doi: 10.1371/journal.ppat.1002941. Epub 2012 Sep 27.

PMID:
23028332
[PubMed - indexed for MEDLINE]
Free PMC Article

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