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Items: 1 to 20 of 37

1.

ChainRank, a chain prioritisation method for contextualisation of biological networks.

Tényi Á, de Atauri P, Gomez-Cabrero D, Cano I, Clarke K, Falciani F, Cascante M, Roca J, Maier D.

BMC Bioinformatics. 2016 Jan 5;17(1):17. doi: 10.1186/s12859-015-0864-x.

2.

eIF6 coordinates insulin sensitivity and lipid metabolism by coupling translation to transcription.

Brina D, Miluzio A, Ricciardi S, Clarke K, Davidsen PK, Viero G, Tebaldi T, Offenhäuser N, Rozman J, Rathkolb B, Neschen S, Klingenspor M, Wolf E, Gailus-Durner V, Fuchs H, Hrabe de Angelis M, Quattrone A, Falciani F, Biffo S.

Nat Commun. 2015 Sep 18;6:8261. doi: 10.1038/ncomms9261.

3.

Inference of Low and High-Grade Glioma Gene Regulatory Networks Delineates the Role of Rnd3 in Establishing Multiple Hallmarks of Cancer.

Clarke K, Daubon T, Turan N, Soulet F, Mohd Zahari M, Ryan KR, Durant S, He S, Herbert J, Ankers J, Heath JK, Bjerkvig R, Bicknell R, Hotchin NA, Bikfalvi A, Falciani F.

PLoS Genet. 2015 Jul 1;11(7):e1005325. doi: 10.1371/journal.pgen.1005325. eCollection 2015 Jul.

4.

Stromal transcriptional profiles reveal hierarchies of anatomical site, serum response and disease and identify disease specific pathways.

Filer A, Antczak P, Parsonage GN, Legault HM, O'Toole M, Pearson MJ, Thomas AM, Scheel-Toellner D, Raza K, Buckley CD, Falciani F.

PLoS One. 2015 Mar 25;10(3):e0120917. doi: 10.1371/journal.pone.0120917. eCollection 2015.

5.

Chronic Obstructive Pulmonary Disease heterogeneity: challenges for health risk assessment, stratification and management.

Roca J, Vargas C, Cano I, Selivanov V, Barreiro E, Maier D, Falciani F, Wagner P, Cascante M, Garcia-Aymerich J, Kalko S, De Mas I, Tegnér J, Escarrabill J, Agustí A, Gomez-Cabrero D; Synergy-COPD consortium.

J Transl Med. 2014 Nov 28;12 Suppl 2:S3. doi: 10.1186/1479-5876-12-S2-S3. Epub 2014 Nov 28. Review.

6.

The COPD Knowledge Base: enabling data analysis and computational simulation in translational COPD research.

Cano I, Tényi Á, Schueller C, Wolff M, Huertas Migueláñez MM, Gomez-Cabrero D, Antczak P, Roca J, Cascante M, Falciani F, Maier D.

J Transl Med. 2014 Nov 28;12 Suppl 2:S6. doi: 10.1186/1479-5876-12-S2-S6. Epub 2014 Nov 28.

7.

Systems Medicine: from molecular features and models to the clinic in COPD.

Gomez-Cabrero D, Menche J, Cano I, Abugessaisa I, Huertas-Migueláñez M, Tenyi A, Marin de Mas I, Kiani NA, Marabita F, Falciani F, Burrowes K, Maier D, Wagner P, Selivanov V, Cascante M, Roca J, Barabási AL, Tegnér J.

J Transl Med. 2014 Nov 28;12 Suppl 2:S4. doi: 10.1186/1479-5876-12-S2-S4. Epub 2014 Nov 28.

8.

A systems biology approach reveals a link between systemic cytokines and skeletal muscle energy metabolism in a rodent smoking model and human COPD.

Davidsen PK, Herbert JM, Antczak P, Clarke K, Ferrer E, Peinado VI, Gonzalez C, Roca J, Egginton S, Barberá JA, Falciani F.

Genome Med. 2014 Aug 9;6(8):59. doi: 10.1186/s13073-014-0059-5. eCollection 2014.

9.

A HIERARCHICAL BAYESIAN MODEL FOR INFERENCE OF COPY NUMBER VARIANTS AND THEIR ASSOCIATION TO GENE EXPRESSION.

Cassese A, Guindani M, Tadesse MG, Falciani F, Vannucci M.

Ann Appl Stat. 2014 Mar 1;8(1):148-175.

10.

Silver nanowire exposure results in internalization and toxicity to Daphnia magna.

Scanlan LD, Reed RB, Loguinov AV, Antczak P, Tagmount A, Aloni S, Nowinski DT, Luong P, Tran C, Karunaratne N, Pham D, Lin XX, Falciani F, Higgins CP, Ranville JF, Vulpe CD, Gilbert B.

ACS Nano. 2013 Dec 23;7(12):10681-94. doi: 10.1021/nn4034103. Epub 2013 Dec 5.

11.

Gene expression networks underlying ovarian development in wild largemouth bass (Micropterus salmoides).

Martyniuk CJ, Prucha MS, Doperalski NJ, Antczak P, Kroll KJ, Falciani F, Barber DS, Denslow ND.

PLoS One. 2013;8(3):e59093. doi: 10.1371/journal.pone.0059093. Epub 2013 Mar 20.

12.

Germinal center B cells govern their own fate via antibody feedback.

Zhang Y, Meyer-Hermann M, George LA, Figge MT, Khan M, Goodall M, Young SP, Reynolds A, Falciani F, Waisman A, Notley CA, Ehrenstein MR, Kosco-Vilbois M, Toellner KM.

J Exp Med. 2013 Mar 11;210(3):457-64. doi: 10.1084/jem.20120150. Epub 2013 Feb 18.

13.

A systems biology approach identifies molecular networks defining skeletal muscle abnormalities in chronic obstructive pulmonary disease.

Turan N, Kalko S, Stincone A, Clarke K, Sabah A, Howlett K, Curnow SJ, Rodriguez DA, Cascante M, O'Neill L, Egginton S, Roca J, Falciani F.

PLoS Comput Biol. 2011 Sep;7(9):e1002129. doi: 10.1371/journal.pcbi.1002129. Epub 2011 Sep 1.

14.

Towards a system level understanding of non-model organisms sampled from the environment: a network biology approach.

Williams TD, Turan N, Diab AM, Wu H, Mackenzie C, Bartie KL, Hrydziuszko O, Lyons BP, Stentiford GD, Herbert JM, Abraham JK, Katsiadaki I, Leaver MJ, Taggart JB, George SG, Viant MR, Chipman KJ, Falciani F.

PLoS Comput Biol. 2011 Aug;7(8):e1002126. doi: 10.1371/journal.pcbi.1002126. Epub 2011 Aug 25.

15.

Ribosomal proteins' association with transcription sites peaks at tRNA genes in Schizosaccharomyces pombe.

De S, Varsally W, Falciani F, Brogna S.

RNA. 2011 Sep;17(9):1713-26. doi: 10.1261/rna.2808411. Epub 2011 Jul 14.

16.

A systems biology approach sheds new light on Escherichia coli acid resistance.

Stincone A, Daudi N, Rahman AS, Antczak P, Henderson I, Cole J, Johnson MD, Lund P, Falciani F.

Nucleic Acids Res. 2011 Sep 1;39(17):7512-28. doi: 10.1093/nar/gkr338. Epub 2011 Jun 19.

17.

A computational framework for gene regulatory network inference that combines multiple methods and datasets.

Gupta R, Stincone A, Antczak P, Durant S, Bicknell R, Bikfalvi A, Falciani F.

BMC Syst Biol. 2011 Apr 13;5:52. doi: 10.1186/1752-0509-5-52.

18.

Analysis of normal-tumour tissue interaction in tumours: prediction of prostate cancer features from the molecular profile of adjacent normal cells.

Trevino V, Tadesse MG, Vannucci M, Al-Shahrour F, Antczak P, Durant S, Bikfalvi A, Dopazo J, Campbell MJ, Falciani F.

PLoS One. 2011 Mar 30;6(3):e16492. doi: 10.1371/journal.pone.0016492.

19.

Knowledge management for systems biology a general and visually driven framework applied to translational medicine.

Maier D, Kalus W, Wolff M, Kalko SG, Roca J, Marin de Mas I, Turan N, Cascante M, Falciani F, Hernandez M, Villà-Freixa J, Losko S.

BMC Syst Biol. 2011 Mar 5;5:38. doi: 10.1186/1752-0509-5-38.

20.

Gene signatures in wound tissue as evidenced by molecular profiling in the chick embryo model.

Soulet F, Kilarski WW, Antczak P, Herbert J, Bicknell R, Falciani F, Bikfalvi A.

BMC Genomics. 2010 Sep 14;11:495. doi: 10.1186/1471-2164-11-495.

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