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Results: 1 to 20 of 71

1.

A systems biology approach reveals a link between systemic cytokines and skeletal muscle energy metabolism in a rodent smoking model and human COPD.

Davidsen PK, Herbert JM, Antczak P, Clarke K, Ferrer E, Peinado VI, Gonzalez C, Roca J, Egginton S, Barberá JA, Falciani F.

Genome Med. 2014 Aug 9;6(8):59. doi: 10.1186/s13073-014-0059-5. eCollection 2014.

PMID:
25228925
[PubMed]
Free PMC Article
2.

The SOLUTIONS project: Challenges and responses for present and future emerging pollutants in land and water resources management.

Brack W, Altenburger R, Schüürmann G, Krauss M, López Herráez D, van Gils J, Slobodnik J, Munthe J, Gawlik BM, van Wezel A, Schriks M, Hollender J, Tollefsen KE, Mekenyan O, Dimitrov S, Bunke D, Cousins I, Posthuma L, van den Brink PJ, López de Alda M, Barceló D, Faust M, Kortenkamp A, Scrimshaw M, Ignatova S, Engelen G, Massmann G, Lemkine G, Teodorovic I, Walz KH, Dulio V, Jonker MT, Jäger F, Chipman K, Falciani F, Liska I, Rooke D, Zhang X, Hollert H, Vrana B, Hilscherova K, Kramer K, Neumann S, Hammerbacher R, Backhaus T, Mack J, Segner H, Escher B, de Aragão Umbuzeiro G.

Sci Total Environ. 2014 Jun 17. pii: S0048-9697(14)00835-3. doi: 10.1016/j.scitotenv.2014.05.143. [Epub ahead of print]

PMID:
24951181
[PubMed - as supplied by publisher]
3.

A HIERARCHICAL BAYESIAN MODEL FOR INFERENCE OF COPY NUMBER VARIANTS AND THEIR ASSOCIATION TO GENE EXPRESSION.

Cassese A, Guindani M, Tadesse MG, Falciani F, Vannucci M.

Ann Appl Stat. 2014 Mar 1;8(1):148-175.

PMID:
24834139
[PubMed]
4.

Silver nanowire exposure results in internalization and toxicity to Daphnia magna.

Scanlan LD, Reed RB, Loguinov AV, Antczak P, Tagmount A, Aloni S, Nowinski DT, Luong P, Tran C, Karunaratne N, Pham D, Lin XX, Falciani F, Higgins CP, Ranville JF, Vulpe CD, Gilbert B.

ACS Nano. 2013 Dec 23;7(12):10681-94. doi: 10.1021/nn4034103. Epub 2013 Dec 5.

PMID:
24099093
[PubMed - indexed for MEDLINE]
5.

Molecular toxicity identification evaluation (mTIE) approach predicts chemical exposure in Daphnia magna.

Antczak P, Jo HJ, Woo S, Scanlan L, Poynton H, Loguinov A, Chan S, Falciani F, Vulpe C.

Environ Sci Technol. 2013 Oct 15;47(20):11747-56. doi: 10.1021/es402819c. Epub 2013 Oct 7.

PMID:
23875995
[PubMed - indexed for MEDLINE]
6.

Gene expression networks underlying ovarian development in wild largemouth bass (Micropterus salmoides).

Martyniuk CJ, Prucha MS, Doperalski NJ, Antczak P, Kroll KJ, Falciani F, Barber DS, Denslow ND.

PLoS One. 2013;8(3):e59093. doi: 10.1371/journal.pone.0059093. Epub 2013 Mar 20.

PMID:
23527095
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Germinal center B cells govern their own fate via antibody feedback.

Zhang Y, Meyer-Hermann M, George LA, Figge MT, Khan M, Goodall M, Young SP, Reynolds A, Falciani F, Waisman A, Notley CA, Ehrenstein MR, Kosco-Vilbois M, Toellner KM.

J Exp Med. 2013 Mar 11;210(3):457-64. doi: 10.1084/jem.20120150. Epub 2013 Feb 18.

PMID:
23420879
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

The experimental renal cell carcinoma model in the chick embryo.

Fergelot P, Bernhard JC, Soulet F, Kilarski WW, Léon C, Courtois N, Deminière C, Herbert JM, Antczak P, Falciani F, Rioux-Leclercq N, Patard JJ, Ferrière JM, Ravaud A, Hagedorn M, Bikfalvi A.

Angiogenesis. 2013 Jan;16(1):181-94. doi: 10.1007/s10456-012-9311-z. Epub 2012 Oct 18.

PMID:
23076651
[PubMed - indexed for MEDLINE]
9.

COMPADRE: an R and web resource for pathway activity analysis by component decompositions.

Ramos-Rodriguez RR, Cuevas-Diaz-Duran R, Falciani F, Tamez-Peña JG, Trevino V.

Bioinformatics. 2012 Oct 15;28(20):2701-2. doi: 10.1093/bioinformatics/bts513. Epub 2012 Aug 24.

PMID:
22923303
[PubMed - indexed for MEDLINE]
Free Article
10.

Identification and pathway mapping of furan target proteins reveal mitochondrial energy production and redox regulation as critical targets of furan toxicity.

Moro S, Chipman JK, Antczak P, Turan N, Dekant W, Falciani F, Mally A.

Toxicol Sci. 2012 Apr;126(2):336-52. doi: 10.1093/toxsci/kfs005. Epub 2012 Jan 12.

PMID:
22240984
[PubMed - indexed for MEDLINE]
Free Article
11.

Relative overexpression of X-linked genes in mouse embryonic stem cells is consistent with Ohno's hypothesis.

Lin H, Halsall JA, Antczak P, O'Neill LP, Falciani F, Turner BM.

Nat Genet. 2011 Nov 28;43(12):1169-70; author reply 1171-2. doi: 10.1038/ng.992. No abstract available.

PMID:
22120049
[PubMed - indexed for MEDLINE]
12.

Muscle and blood redox status after exercise training in severe COPD patients.

Rodriguez DA, Kalko S, Puig-Vilanova E, Perez-Olabarría M, Falciani F, Gea J, Cascante M, Barreiro E, Roca J.

Free Radic Biol Med. 2012 Jan 1;52(1):88-94. doi: 10.1016/j.freeradbiomed.2011.09.022. Epub 2011 Oct 4.

PMID:
22064359
[PubMed - indexed for MEDLINE]
13.

A systems biology approach identifies molecular networks defining skeletal muscle abnormalities in chronic obstructive pulmonary disease.

Turan N, Kalko S, Stincone A, Clarke K, Sabah A, Howlett K, Curnow SJ, Rodriguez DA, Cascante M, O'Neill L, Egginton S, Roca J, Falciani F.

PLoS Comput Biol. 2011 Sep;7(9):e1002129. doi: 10.1371/journal.pcbi.1002129. Epub 2011 Sep 1.

PMID:
21909251
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Towards a system level understanding of non-model organisms sampled from the environment: a network biology approach.

Williams TD, Turan N, Diab AM, Wu H, Mackenzie C, Bartie KL, Hrydziuszko O, Lyons BP, Stentiford GD, Herbert JM, Abraham JK, Katsiadaki I, Leaver MJ, Taggart JB, George SG, Viant MR, Chipman KJ, Falciani F.

PLoS Comput Biol. 2011 Aug;7(8):e1002126. doi: 10.1371/journal.pcbi.1002126. Epub 2011 Aug 25.

PMID:
21901081
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Ribosomal proteins' association with transcription sites peaks at tRNA genes in Schizosaccharomyces pombe.

De S, Varsally W, Falciani F, Brogna S.

RNA. 2011 Sep;17(9):1713-26. doi: 10.1261/rna.2808411. Epub 2011 Jul 14.

PMID:
21757508
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Identification and angiogenic role of the novel tumor endothelial marker CLEC14A.

Mura M, Swain RK, Zhuang X, Vorschmitt H, Reynolds G, Durant S, Beesley JF, Herbert JM, Sheldon H, Andre M, Sanderson S, Glen K, Luu NT, McGettrick HM, Antczak P, Falciani F, Nash GB, Nagy ZS, Bicknell R.

Oncogene. 2012 Jan 19;31(3):293-305. doi: 10.1038/onc.2011.233. Epub 2011 Jun 27.

PMID:
21706054
[PubMed - indexed for MEDLINE]
17.

A systems biology approach sheds new light on Escherichia coli acid resistance.

Stincone A, Daudi N, Rahman AS, Antczak P, Henderson I, Cole J, Johnson MD, Lund P, Falciani F.

Nucleic Acids Res. 2011 Sep 1;39(17):7512-28. doi: 10.1093/nar/gkr338. Epub 2011 Jun 19.

PMID:
21690099
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

A computational framework for gene regulatory network inference that combines multiple methods and datasets.

Gupta R, Stincone A, Antczak P, Durant S, Bicknell R, Bikfalvi A, Falciani F.

BMC Syst Biol. 2011 Apr 13;5:52. doi: 10.1186/1752-0509-5-52.

PMID:
21489290
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Analysis of normal-tumour tissue interaction in tumours: prediction of prostate cancer features from the molecular profile of adjacent normal cells.

Trevino V, Tadesse MG, Vannucci M, Al-Shahrour F, Antczak P, Durant S, Bikfalvi A, Dopazo J, Campbell MJ, Falciani F.

PLoS One. 2011 Mar 30;6(3):e16492. doi: 10.1371/journal.pone.0016492.

PMID:
21479216
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Knowledge management for systems biology a general and visually driven framework applied to translational medicine.

Maier D, Kalus W, Wolff M, Kalko SG, Roca J, Marin de Mas I, Turan N, Cascante M, Falciani F, Hernandez M, Villà-Freixa J, Losko S.

BMC Syst Biol. 2011 Mar 5;5:38. doi: 10.1186/1752-0509-5-38.

PMID:
21375767
[PubMed - indexed for MEDLINE]
Free PMC Article

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