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Results: 1 to 20 of 24

1.

Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs.

Green RE, Braun EL, Armstrong J, Earl D, Nguyen N, Hickey G, Vandewege MW, St John JA, Capella-Gutiérrez S, Castoe TA, Kern C, Fujita MK, Opazo JC, Jurka J, Kojima KK, Caballero J, Hubley RM, Smit AF, Platt RN, Lavoie CA, Ramakodi MP, Finger JW Jr, Suh A, Isberg SR, Miles L, Chong AY, Jaratlerdsiri W, Gongora J, Moran C, Iriarte A, McCormack J, Burgess SC, Edwards SV, Lyons E, Williams C, Breen M, Howard JT, Gresham CR, Peterson DG, Schmitz J, Pollock DD, Haussler D, Triplett EW, Zhang G, Irie N, Jarvis ED, Brochu CA, Schmidt CJ, McCarthy FM, Faircloth BC, Hoffmann FG, Glenn TC, Gabaldón T, Paten B, Ray DA.

Science. 2014 Dec 12;346(6215):1254449. doi: 10.1126/science.1254449. Epub 2014 Dec 11.

PMID:
25504731
[PubMed - indexed for MEDLINE]
2.

Whole-genome analyses resolve early branches in the tree of life of modern birds.

Jarvis ED, Mirarab S, Aberer AJ, Li B, Houde P, Li C, Ho SY, Faircloth BC, Nabholz B, Howard JT, Suh A, Weber CC, da Fonseca RR, Li J, Zhang F, Li H, Zhou L, Narula N, Liu L, Ganapathy G, Boussau B, Bayzid MS, Zavidovych V, Subramanian S, Gabaldón T, Capella-Gutiérrez S, Huerta-Cepas J, Rekepalli B, Munch K, Schierup M, Lindow B, Warren WC, Ray D, Green RE, Bruford MW, Zhan X, Dixon A, Li S, Li N, Huang Y, Derryberry EP, Bertelsen MF, Sheldon FH, Brumfield RT, Mello CV, Lovell PV, Wirthlin M, Schneider MP, Prosdocimi F, Samaniego JA, Vargas Velazquez AM, Alfaro-Núñez A, Campos PF, Petersen B, Sicheritz-Ponten T, Pas A, Bailey T, Scofield P, Bunce M, Lambert DM, Zhou Q, Perelman P, Driskell AC, Shapiro B, Xiong Z, Zeng Y, Liu S, Li Z, Liu B, Wu K, Xiao J, Yinqi X, Zheng Q, Zhang Y, Yang H, Wang J, Smeds L, Rheindt FE, Braun M, Fjeldsa J, Orlando L, Barker FK, Jønsson KA, Johnson W, Koepfli KP, O'Brien S, Haussler D, Ryder OA, Rahbek C, Willerslev E, Graves GR, Glenn TC, McCormack J, Burt D, Ellegren H, Alström P, Edwards SV, Stamatakis A, Mindell DP, Cracraft J, Braun EL, Warnow T, Jun W, Gilbert MT, Zhang G.

Science. 2014 Dec 12;346(6215):1320-31. doi: 10.1126/science.1253451.

PMID:
25504713
[PubMed - indexed for MEDLINE]
3.

A phylogenomic analysis of turtles.

Crawford NG, Parham JF, Sellas AB, Faircloth BC, Glenn TC, Papenfuss TJ, Henderson JB, Hansen MH, Simison WB.

Mol Phylogenet Evol. 2014 Nov 4;83C:250-257. doi: 10.1016/j.ympev.2014.10.021. [Epub ahead of print]

PMID:
25450099
[PubMed - as supplied by publisher]
4.

The drivers of tropical speciation.

Smith BT, McCormack JE, Cuervo AM, Hickerson MJ, Aleixo A, Cadena CD, Pérez-Emán J, Burney CW, Xie X, Harvey MG, Faircloth BC, Glenn TC, Derryberry EP, Prejean J, Fields S, Brumfield RT.

Nature. 2014 Nov 20;515(7527):406-9. doi: 10.1038/nature13687. Epub 2014 Sep 10.

PMID:
25209666
[PubMed - indexed for MEDLINE]
5.

Target enrichment of ultraconserved elements from arthropods provides a genomic perspective on relationships among Hymenoptera.

Faircloth BC, Branstetter MG, White ND, Brady SG.

Mol Ecol Resour. 2014 Sep 10. doi: 10.1111/1755-0998.12328. [Epub ahead of print]

PMID:
25207863
[PubMed - as supplied by publisher]
6.

The evolution of peafowl and other taxa with ocelli (eyespots): a phylogenomic approach.

Sun K, Meiklejohn KA, Faircloth BC, Glenn TC, Braun EL, Kimball RT.

Proc Biol Sci. 2014 Sep 7;281(1790). pii: 20140823. doi: 10.1098/rspb.2014.0823.

PMID:
25030982
[PubMed - in process]
7.

Speciation in Western Scrub-Jays, Haldane's rule, and genetic clines in secondary contact.

Gowen FC, Maley JM, Cicero C, Peterson AT, Faircloth BC, Warr TC, McCormack JE.

BMC Evol Biol. 2014 Jun 17;14:135. doi: 10.1186/1471-2148-14-135.

PMID:
24938753
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Incongruence among different mitochondrial regions: a case study using complete mitogenomes.

Meiklejohn KA, Danielson MJ, Faircloth BC, Glenn TC, Braun EL, Kimball RT.

Mol Phylogenet Evol. 2014 Sep;78:314-23. doi: 10.1016/j.ympev.2014.06.003. Epub 2014 Jun 12.

PMID:
24929245
[PubMed - indexed for MEDLINE]
9.

Significant variance in genetic diversity among populations of Schistosoma haematobium detected using microsatellite DNA loci from a genome-wide database.

Glenn TC, Lance SL, McKee AM, Webster BL, Emery AM, Zerlotini A, Oliveira G, Rollinson D, Faircloth BC.

Parasit Vectors. 2013 Oct 17;6(1):300. doi: 10.1186/1756-3305-6-300.

PMID:
24499537
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Target capture and massively parallel sequencing of ultraconserved elements for comparative studies at shallow evolutionary time scales.

Smith BT, Harvey MG, Faircloth BC, Glenn TC, Brumfield RT.

Syst Biol. 2014 Jan 1;63(1):83-95. doi: 10.1093/sysbio/syt061. Epub 2013 Sep 10.

PMID:
24021724
[PubMed - indexed for MEDLINE]
11.

A Phylogenomic Perspective on the Radiation of Ray-Finned Fishes Based upon Targeted Sequencing of Ultraconserved Elements (UCEs).

Faircloth BC, Sorenson L, Santini F, Alfaro ME.

PLoS One. 2013 Jun 18;8(6):e65923. Print 2013.

PMID:
23824177
[PubMed - as supplied by publisher]
Free PMC Article
12.

Next-generation phylogenetics takes root.

McCormack JE, Faircloth BC.

Mol Ecol. 2013 Jan;22(1):19-20. No abstract available.

PMID:
23383410
[PubMed - indexed for MEDLINE]
13.

A phylogeny of birds based on over 1,500 loci collected by target enrichment and high-throughput sequencing.

McCormack JE, Harvey MG, Faircloth BC, Crawford NG, Glenn TC, Brumfield RT.

PLoS One. 2013;8(1):e54848. doi: 10.1371/journal.pone.0054848. Epub 2013 Jan 29.

PMID:
23382987
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Not all sequence tags are created equal: designing and validating sequence identification tags robust to indels.

Faircloth BC, Glenn TC.

PLoS One. 2012;7(8):e42543. doi: 10.1371/journal.pone.0042543. Epub 2012 Aug 10.

PMID:
22900027
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Primer3--new capabilities and interfaces.

Untergasser A, Cutcutache I, Koressaar T, Ye J, Faircloth BC, Remm M, Rozen SG.

Nucleic Acids Res. 2012 Aug;40(15):e115. Epub 2012 Jun 22.

PMID:
22730293
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

More than 1000 ultraconserved elements provide evidence that turtles are the sister group of archosaurs.

Crawford NG, Faircloth BC, McCormack JE, Brumfield RT, Winker K, Glenn TC.

Biol Lett. 2012 Oct 23;8(5):783-6. doi: 10.1098/rsbl.2012.0331. Epub 2012 May 16.

PMID:
22593086
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes.

St John JA, Braun EL, Isberg SR, Miles LG, Chong AY, Gongora J, Dalzell P, Moran C, Bed'hom B, Abzhanov A, Burgess SC, Cooksey AM, Castoe TA, Crawford NG, Densmore LD, Drew JC, Edwards SV, Faircloth BC, Fujita MK, Greenwold MJ, Hoffmann FG, Howard JM, Iguchi T, Janes DE, Khan SY, Kohno S, de Koning AJ, Lance SL, McCarthy FM, McCormack JE, Merchant ME, Peterson DG, Pollock DD, Pourmand N, Raney BJ, Roessler KA, Sanford JR, Sawyer RH, Schmidt CJ, Triplett EW, Tuberville TD, Venegas-Anaya M, Howard JT, Jarvis ED, Guillette LJ Jr, Glenn TC, Green RE, Ray DA.

Genome Biol. 2012 Jan 31;13(1):415. doi: 10.1186/gb-2012-13-1-415.

PMID:
22293439
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Ultraconserved elements anchor thousands of genetic markers spanning multiple evolutionary timescales.

Faircloth BC, McCormack JE, Crawford NG, Harvey MG, Brumfield RT, Glenn TC.

Syst Biol. 2012 Oct;61(5):717-26. doi: 10.1093/sysbio/sys004. Epub 2012 Jan 9.

PMID:
22232343
[PubMed - indexed for MEDLINE]
19.

Ultraconserved elements are novel phylogenomic markers that resolve placental mammal phylogeny when combined with species-tree analysis.

McCormack JE, Faircloth BC, Crawford NG, Gowaty PA, Brumfield RT, Glenn TC.

Genome Res. 2012 Apr;22(4):746-54. doi: 10.1101/gr.125864.111. Epub 2011 Dec 29.

PMID:
22207614
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Developing a community-based genetic nomenclature for anole lizards.

Kusumi K, Kulathinal RJ, Abzhanov A, Boissinot S, Crawford NG, Faircloth BC, Glenn TC, Janes DE, Losos JB, Menke DB, Poe S, Sanger TJ, Schneider CJ, Stapley J, Wade J, Wilson-Rawls J.

BMC Genomics. 2011 Nov 11;12:554. doi: 10.1186/1471-2164-12-554.

PMID:
22077994
[PubMed - indexed for MEDLINE]
Free PMC Article

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