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Results: 1 to 20 of 28

1.

New generation of artificial MicroRNA and synthetic trans-acting small interfering RNA vectors for efficient gene silencing in Arabidopsis.

Carbonell A, Takeda A, Fahlgren N, Johnson SC, Cuperus JT, Carrington JC.

Plant Physiol. 2014 May;165(1):15-29. doi: 10.1104/pp.113.234989. Epub 2014 Mar 19.

PMID:
24647477
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon.

Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ.

Genome Biol. 2013 Dec 24;14(12):R145. doi: 10.1186/gb-2013-14-12-r145.

PMID:
24367943
[PubMed - in process]
Free PMC Article
3.

Phytophthora have distinct endogenous small RNA populations that include short interfering and microRNAs.

Fahlgren N, Bollmann SR, Kasschau KD, Cuperus JT, Press CM, Sullivan CM, Chapman EJ, Hoyer JS, Gilbert KB, Grünwald NJ, Carrington JC.

PLoS One. 2013 Oct 21;8(10):e77181. doi: 10.1371/journal.pone.0077181. eCollection 2013.

PMID:
24204767
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Functional analysis of three Arabidopsis ARGONAUTES using slicer-defective mutants.

Carbonell A, Fahlgren N, Garcia-Ruiz H, Gilbert KB, Montgomery TA, Nguyen T, Cuperus JT, Carrington JC.

Plant Cell. 2012 Sep;24(9):3613-29. doi: 10.1105/tpc.112.099945. Epub 2012 Sep 28.

PMID:
23023169
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

The Caenorhabditis elegans RDE-10/RDE-11 complex regulates RNAi by promoting secondary siRNA amplification.

Zhang C, Montgomery TA, Fischer SE, Garcia SM, Riedel CG, Fahlgren N, Sullivan CM, Carrington JC, Ruvkun G.

Curr Biol. 2012 May 22;22(10):881-90. doi: 10.1016/j.cub.2012.04.011. Epub 2012 Apr 26.

PMID:
22542102
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

The ERI-6/7 helicase acts at the first stage of an siRNA amplification pathway that targets recent gene duplications.

Fischer SE, Montgomery TA, Zhang C, Fahlgren N, Breen PC, Hwang A, Sullivan CM, Carrington JC, Ruvkun G.

PLoS Genet. 2011 Nov;7(11):e1002369. doi: 10.1371/journal.pgen.1002369. Epub 2011 Nov 10.

PMID:
22102828
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

The Arabidopsis lyrata genome sequence and the basis of rapid genome size change.

Hu TT, Pattyn P, Bakker EG, Cao J, Cheng JF, Clark RM, Fahlgren N, Fawcett JA, Grimwood J, Gundlach H, Haberer G, Hollister JD, Ossowski S, Ottilar RP, Salamov AA, Schneeberger K, Spannagl M, Wang X, Yang L, Nasrallah ME, Bergelson J, Carrington JC, Gaut BS, Schmutz J, Mayer KF, Van de Peer Y, Grigoriev IV, Nordborg M, Weigel D, Guo YL.

Nat Genet. 2011 May;43(5):476-81. doi: 10.1038/ng.807. Epub 2011 Apr 10.

PMID:
21478890
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Evolution and functional diversification of MIRNA genes.

Cuperus JT, Fahlgren N, Carrington JC.

Plant Cell. 2011 Feb;23(2):431-42. doi: 10.1105/tpc.110.082784. Epub 2011 Feb 11. Review.

PMID:
21317375
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

mut-16 and other mutator class genes modulate 22G and 26G siRNA pathways in Caenorhabditis elegans.

Zhang C, Montgomery TA, Gabel HW, Fischer SE, Phillips CM, Fahlgren N, Sullivan CM, Carrington JC, Ruvkun G.

Proc Natl Acad Sci U S A. 2011 Jan 25;108(4):1201-8. doi: 10.1073/pnas.1018695108. Epub 2011 Jan 18.

PMID:
21245313
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Unique functionality of 22-nt miRNAs in triggering RDR6-dependent siRNA biogenesis from target transcripts in Arabidopsis.

Cuperus JT, Carbonell A, Fahlgren N, Garcia-Ruiz H, Burke RT, Takeda A, Sullivan CM, Gilbert SD, Montgomery TA, Carrington JC.

Nat Struct Mol Biol. 2010 Aug;17(8):997-1003. doi: 10.1038/nsmb.1866. Epub 2010 Jun 18.

PMID:
20562854
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana.

Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC.

Plant Cell. 2010 Apr;22(4):1074-89. doi: 10.1105/tpc.110.073999. Epub 2010 Apr 20.

PMID:
20407027
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Arabidopsis RNA-dependent RNA polymerases and dicer-like proteins in antiviral defense and small interfering RNA biogenesis during Turnip Mosaic Virus infection.

Garcia-Ruiz H, Takeda A, Chapman EJ, Sullivan CM, Fahlgren N, Brempelis KJ, Carrington JC.

Plant Cell. 2010 Feb;22(2):481-96. doi: 10.1105/tpc.109.073056. Epub 2010 Feb 26.

PMID:
20190077
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Genome-wide profiling of populus small RNAs.

Klevebring D, Street NR, Fahlgren N, Kasschau KD, Carrington JC, Lundeberg J, Jansson S.

BMC Genomics. 2009 Dec 20;10:620. doi: 10.1186/1471-2164-10-620.

PMID:
20021695
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Identification of MIR390a precursor processing-defective mutants in Arabidopsis by direct genome sequencing.

Cuperus JT, Montgomery TA, Fahlgren N, Burke RT, Townsend T, Sullivan CM, Carrington JC.

Proc Natl Acad Sci U S A. 2010 Jan 5;107(1):466-71. doi: 10.1073/pnas.0913203107. Epub 2009 Dec 14.

PMID:
20018656
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

miRNA Target Prediction in Plants.

Fahlgren N, Carrington JC.

Methods Mol Biol. 2010;592:51-7. doi: 10.1007/978-1-60327-005-2_4.

PMID:
19802588
[PubMed - indexed for MEDLINE]
16.

Distinct argonaute-mediated 22G-RNA pathways direct genome surveillance in the C. elegans germline.

Gu W, Shirayama M, Conte D Jr, Vasale J, Batista PJ, Claycomb JM, Moresco JJ, Youngman EM, Keys J, Stoltz MJ, Chen CC, Chaves DA, Duan S, Kasschau KD, Fahlgren N, Yates JR 3rd, Mitani S, Carrington JC, Mello CC.

Mol Cell. 2009 Oct 23;36(2):231-44. doi: 10.1016/j.molcel.2009.09.020. Epub 2009 Oct 1.

PMID:
19800275
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans.

Haas BJ, Kamoun S, Zody MC, Jiang RH, Handsaker RE, Cano LM, Grabherr M, Kodira CD, Raffaele S, Torto-Alalibo T, Bozkurt TO, Ah-Fong AM, Alvarado L, Anderson VL, Armstrong MR, Avrova A, Baxter L, Beynon J, Boevink PC, Bollmann SR, Bos JI, Bulone V, Cai G, Cakir C, Carrington JC, Chawner M, Conti L, Costanzo S, Ewan R, Fahlgren N, Fischbach MA, Fugelstad J, Gilroy EM, Gnerre S, Green PJ, Grenville-Briggs LJ, Griffith J, Grünwald NJ, Horn K, Horner NR, Hu CH, Huitema E, Jeong DH, Jones AM, Jones JD, Jones RW, Karlsson EK, Kunjeti SG, Lamour K, Liu Z, Ma L, Maclean D, Chibucos MC, McDonald H, McWalters J, Meijer HJ, Morgan W, Morris PF, Munro CA, O'Neill K, Ospina-Giraldo M, Pinzón A, Pritchard L, Ramsahoye B, Ren Q, Restrepo S, Roy S, Sadanandom A, Savidor A, Schornack S, Schwartz DC, Schumann UD, Schwessinger B, Seyer L, Sharpe T, Silvar C, Song J, Studholme DJ, Sykes S, Thines M, van de Vondervoort PJ, Phuntumart V, Wawra S, Weide R, Win J, Young C, Zhou S, Fry W, Meyers BC, van West P, Ristaino J, Govers F, Birch PR, Whisson SC, Judelson HS, Nusbaum C.

Nature. 2009 Sep 17;461(7262):393-8. doi: 10.1038/nature08358. Epub 2009 Sep 9.

PMID:
19741609
[PubMed - indexed for MEDLINE]
18.

Computational and analytical framework for small RNA profiling by high-throughput sequencing.

Fahlgren N, Sullivan CM, Kasschau KD, Chapman EJ, Cumbie JS, Montgomery TA, Gilbert SD, Dasenko M, Backman TW, Givan SA, Carrington JC.

RNA. 2009 May;15(5):992-1002. doi: 10.1261/rna.1473809. Epub 2009 Mar 23.

PMID:
19307293
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

AGO1-miR173 complex initiates phased siRNA formation in plants.

Montgomery TA, Yoo SJ, Fahlgren N, Gilbert SD, Howell MD, Sullivan CM, Alexander A, Nguyen G, Allen E, Ahn JH, Carrington JC.

Proc Natl Acad Sci U S A. 2008 Dec 23;105(51):20055-62. doi: 10.1073/pnas.0810241105. Epub 2008 Dec 9.

PMID:
19066226
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

PRG-1 and 21U-RNAs interact to form the piRNA complex required for fertility in C. elegans.

Batista PJ, Ruby JG, Claycomb JM, Chiang R, Fahlgren N, Kasschau KD, Chaves DA, Gu W, Vasale JJ, Duan S, Conte D Jr, Luo S, Schroth GP, Carrington JC, Bartel DP, Mello CC.

Mol Cell. 2008 Jul 11;31(1):67-78. doi: 10.1016/j.molcel.2008.06.002. Epub 2008 Jun 19.

PMID:
18571452
[PubMed - indexed for MEDLINE]
Free PMC Article
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