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Items: 1 to 20 of 58

1.

The alternative splicing program of differentiated smooth muscle cells involves concerted non-productive splicing of post-transcriptional regulators.

Llorian M, Gooding C, Bellora N, Hallegger M, Buckroyd A, Wang X, Rajgor D, Kayikci M, Feltham J, Ule J, Eyras E, Smith CW.

Nucleic Acids Res. 2016 Jun 17. pii: gkw560. [Epub ahead of print]

2.

Large-scale analysis of genome and transcriptome alterations in multiple tumors unveils novel cancer-relevant splicing networks.

Sebestyén E, Singh B, Miñana B, Pagès A, Mateo F, Pujana MA, Valcárcel J, Eyras E.

Genome Res. 2016 Jun;26(6):732-44. doi: 10.1101/gr.199935.115. Epub 2016 Apr 13.

PMID:
27197215
3.

Dual function of C/D box small nucleolar RNAs in rRNA modification and alternative pre-mRNA splicing.

Falaleeva M, Pages A, Matuszek Z, Hidmi S, Agranat-Tamir L, Korotkov K, Nevo Y, Eyras E, Sperling R, Stamm S.

Proc Natl Acad Sci U S A. 2016 Mar 22;113(12):E1625-34. doi: 10.1073/pnas.1519292113. Epub 2016 Mar 8.

PMID:
26957605
4.

A Quantitative Profiling Tool for Diverse Genomic Data Types Reveals Potential Associations between Chromatin and Pre-mRNA Processing.

Kremsky I, Bellora N, Eyras E.

PLoS One. 2015 Jul 24;10(7):e0132448. doi: 10.1371/journal.pone.0132448. eCollection 2015.

5.

Leveraging transcript quantification for fast computation of alternative splicing profiles.

Alamancos GP, Pagès A, Trincado JL, Bellora N, Eyras E.

RNA. 2015 Sep;21(9):1521-31. doi: 10.1261/rna.051557.115. Epub 2015 Jul 15.

6.

A semi-supervised approach uncovers thousands of intragenic enhancers differentially activated in human cells.

González-Vallinas J, Pagès A, Singh B, Eyras E.

BMC Genomics. 2015 Jul 14;16:523. doi: 10.1186/s12864-015-1704-0.

7.

AtRTD - a comprehensive reference transcript dataset resource for accurate quantification of transcript-specific expression in Arabidopsis thaliana.

Zhang R, Calixto CP, Tzioutziou NA, James AB, Simpson CG, Guo W, Marquez Y, Kalyna M, Patro R, Eyras E, Barta A, Nimmo HG, Brown JW.

New Phytol. 2015 Oct;208(1):96-101. doi: 10.1111/nph.13545. Epub 2015 Jun 25.

8.

A chromatin code for alternative splicing involving a putative association between CTCF and HP1α proteins.

Agirre E, Bellora N, Alló M, Pagès A, Bertucci P, Kornblihtt AR, Eyras E.

BMC Biol. 2015 May 2;13:31. doi: 10.1186/s12915-015-0141-5.

9.

The BioMart community portal: an innovative alternative to large, centralized data repositories.

Smedley D, Haider S, Durinck S, Pandini L, Provero P, Allen J, Arnaiz O, Awedh MH, Baldock R, Barbiera G, Bardou P, Beck T, Blake A, Bonierbale M, Brookes AJ, Bucci G, Buetti I, Burge S, Cabau C, Carlson JW, Chelala C, Chrysostomou C, Cittaro D, Collin O, Cordova R, Cutts RJ, Dassi E, Di Genova A, Djari A, Esposito A, Estrella H, Eyras E, Fernandez-Banet J, Forbes S, Free RC, Fujisawa T, Gadaleta E, Garcia-Manteiga JM, Goodstein D, Gray K, Guerra-Assunção JA, Haggarty B, Han DJ, Han BW, Harris T, Harshbarger J, Hastings RK, Hayes RD, Hoede C, Hu S, Hu ZL, Hutchins L, Kan Z, Kawaji H, Keliet A, Kerhornou A, Kim S, Kinsella R, Klopp C, Kong L, Lawson D, Lazarevic D, Lee JH, Letellier T, Li CY, Lio P, Liu CJ, Luo J, Maass A, Mariette J, Maurel T, Merella S, Mohamed AM, Moreews F, Nabihoudine I, Ndegwa N, Noirot C, Perez-Llamas C, Primig M, Quattrone A, Quesneville H, Rambaldi D, Reecy J, Riba M, Rosanoff S, Saddiq AA, Salas E, Sallou O, Shepherd R, Simon R, Sperling L, Spooner W, Staines DM, Steinbach D, Stone K, Stupka E, Teague JW, Dayem Ullah AZ, Wang J, Ware D, Wong-Erasmus M, Youens-Clark K, Zadissa A, Zhang SJ, Kasprzyk A.

Nucleic Acids Res. 2015 Jul 1;43(W1):W589-98. doi: 10.1093/nar/gkv350. Epub 2015 Apr 20.

10.

Nuclear matrix protein Matrin3 regulates alternative splicing and forms overlapping regulatory networks with PTB.

Coelho MB, Attig J, Bellora N, König J, Hallegger M, Kayikci M, Eyras E, Ule J, Smith CW.

EMBO J. 2015 Mar 4;34(5):653-68. doi: 10.15252/embj.201489852. Epub 2015 Jan 19.

11.

Detection of recurrent alternative splicing switches in tumor samples reveals novel signatures of cancer.

Sebestyén E, Zawisza M, Eyras E.

Nucleic Acids Res. 2015 Feb 18;43(3):1345-56. doi: 10.1093/nar/gku1392. Epub 2015 Jan 10.

12.

Argonaute-1 binds transcriptional enhancers and controls constitutive and alternative splicing in human cells.

Alló M, Agirre E, Bessonov S, Bertucci P, Gómez Acuña L, Buggiano V, Bellora N, Singh B, Petrillo E, Blaustein M, Miñana B, Dujardin G, Pozzi B, Pelisch F, Bechara E, Agafonov DE, Srebrow A, Lührmann R, Valcárcel J, Eyras E, Kornblihtt AR.

Proc Natl Acad Sci U S A. 2014 Nov 4;111(44):15622-9. doi: 10.1073/pnas.1416858111. Epub 2014 Oct 13.

13.

A global regulatory mechanism for activating an exon network required for neurogenesis.

Raj B, Irimia M, Braunschweig U, Sterne-Weiler T, O'Hanlon D, Lin ZY, Chen GI, Easton LE, Ule J, Gingras AC, Eyras E, Blencowe BJ.

Mol Cell. 2014 Oct 2;56(1):90-103. doi: 10.1016/j.molcel.2014.08.011. Epub 2014 Sep 11.

14.

The translational landscape of the splicing factor SRSF1 and its role in mitosis.

Maslon MM, Heras SR, Bellora N, Eyras E, Cáceres JF.

Elife. 2014 May 6:e02028. doi: 10.7554/eLife.02028. [Epub ahead of print]

15.

Regulation of FAS exon definition and apoptosis by the Ewing sarcoma protein.

Paronetto MP, Bernardis I, Volpe E, Bechara E, Sebestyén E, Eyras E, Valcárcel J.

Cell Rep. 2014 May 22;7(4):1211-26. doi: 10.1016/j.celrep.2014.03.077. Epub 2014 May 10.

16.

Methods to study splicing from high-throughput RNA sequencing data.

Alamancos GP, Agirre E, Eyras E.

Methods Mol Biol. 2014;1126:357-97. doi: 10.1007/978-1-62703-980-2_26.

PMID:
24549677
17.

Approaches to link RNA secondary structures with splicing regulation.

Plass M, Eyras E.

Methods Mol Biol. 2014;1126:341-56. doi: 10.1007/978-1-62703-980-2_25.

PMID:
24549676
18.

Drosha regulates gene expression independently of RNA cleavage function.

Gromak N, Dienstbier M, Macias S, Plass M, Eyras E, Cáceres JF, Proudfoot NJ.

Cell Rep. 2013 Dec 26;5(6):1499-510. doi: 10.1016/j.celrep.2013.11.032. Epub 2013 Dec 19. Erratum in: Cell Rep. 2014 Jun 12;7(5):1753-4.

19.

RBM5, 6, and 10 differentially regulate NUMB alternative splicing to control cancer cell proliferation.

Bechara EG, Sebestyén E, Bernardis I, Eyras E, Valcárcel J.

Mol Cell. 2013 Dec 12;52(5):720-33. doi: 10.1016/j.molcel.2013.11.010.

20.

The Microprocessor controls the activity of mammalian retrotransposons.

Heras SR, Macias S, Plass M, Fernandez N, Cano D, Eyras E, Garcia-Perez JL, Cáceres JF.

Nat Struct Mol Biol. 2013 Oct;20(10):1173-81. doi: 10.1038/nsmb.2658. Epub 2013 Sep 1.

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