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Results: 1 to 20 of 49

1.

Nuclear matrix protein Matrin3 regulates alternative splicing and forms overlapping regulatory networks with PTB.

Coelho MB, Attig J, Bellora N, König J, Hallegger M, Kayikci M, Eyras E, Ule J, Smith CW.

EMBO J. 2015 Jan 19. pii: e201489852. [Epub ahead of print]

PMID:
25599992
[PubMed - as supplied by publisher]
Free Article
2.

Detection of recurrent alternative splicing switches in tumor samples reveals novel signatures of cancer.

Sebestyén E, Zawisza M, Eyras E.

Nucleic Acids Res. 2015 Jan 10. pii: gku1392. [Epub ahead of print]

PMID:
25578962
[PubMed - as supplied by publisher]
Free Article
3.

Argonaute-1 binds transcriptional enhancers and controls constitutive and alternative splicing in human cells.

Alló M, Agirre E, Bessonov S, Bertucci P, Gómez Acuña L, Buggiano V, Bellora N, Singh B, Petrillo E, Blaustein M, Miñana B, Dujardin G, Pozzi B, Pelisch F, Bechara E, Agafonov DE, Srebrow A, Lührmann R, Valcárcel J, Eyras E, Kornblihtt AR.

Proc Natl Acad Sci U S A. 2014 Nov 4;111(44):15622-9. doi: 10.1073/pnas.1416858111. Epub 2014 Oct 13.

PMID:
25313066
[PubMed - in process]
Free PMC Article
4.

A global regulatory mechanism for activating an exon network required for neurogenesis.

Raj B, Irimia M, Braunschweig U, Sterne-Weiler T, O'Hanlon D, Lin ZY, Chen GI, Easton LE, Ule J, Gingras AC, Eyras E, Blencowe BJ.

Mol Cell. 2014 Oct 2;56(1):90-103. doi: 10.1016/j.molcel.2014.08.011. Epub 2014 Sep 11.

PMID:
25219497
[PubMed - indexed for MEDLINE]
5.

The translational landscape of the splicing factor SRSF1 and its role in mitosis.

Maslon MM, Heras SR, Bellora N, Eyras E, Cáceres JF.

Elife. 2014 May 6:e02028. doi: 10.7554/eLife.02028. [Epub ahead of print]

PMID:
24842991
[PubMed - as supplied by publisher]
Free PMC Article
6.

Regulation of FAS exon definition and apoptosis by the Ewing sarcoma protein.

Paronetto MP, Bernardis I, Volpe E, Bechara E, Sebestyén E, Eyras E, Valcárcel J.

Cell Rep. 2014 May 22;7(4):1211-26. doi: 10.1016/j.celrep.2014.03.077. Epub 2014 May 10.

PMID:
24813895
[PubMed - in process]
Free Article
7.

Methods to study splicing from high-throughput RNA sequencing data.

Alamancos GP, Agirre E, Eyras E.

Methods Mol Biol. 2014;1126:357-97. doi: 10.1007/978-1-62703-980-2_26.

PMID:
24549677
[PubMed - indexed for MEDLINE]
8.

Approaches to link RNA secondary structures with splicing regulation.

Plass M, Eyras E.

Methods Mol Biol. 2014;1126:341-56. doi: 10.1007/978-1-62703-980-2_25.

PMID:
24549676
[PubMed - indexed for MEDLINE]
9.

Drosha regulates gene expression independently of RNA cleavage function.

Gromak N, Dienstbier M, Macias S, Plass M, Eyras E, Cáceres JF, Proudfoot NJ.

Cell Rep. 2013 Dec 26;5(6):1499-510. doi: 10.1016/j.celrep.2013.11.032. Epub 2013 Dec 19.

PMID:
24360955
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

RBM5, 6, and 10 differentially regulate NUMB alternative splicing to control cancer cell proliferation.

Bechara EG, Sebestyén E, Bernardis I, Eyras E, Valcárcel J.

Mol Cell. 2013 Dec 12;52(5):720-33. doi: 10.1016/j.molcel.2013.11.010.

PMID:
24332178
[PubMed - indexed for MEDLINE]
Free Article
11.

The Microprocessor controls the activity of mammalian retrotransposons.

Heras SR, Macias S, Plass M, Fernandez N, Cano D, Eyras E, Garcia-Perez JL, Cáceres JF.

Nat Struct Mol Biol. 2013 Oct;20(10):1173-81. doi: 10.1038/nsmb.2658. Epub 2013 Sep 1.

PMID:
23995758
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

The 5' untranslated region of the serotonin receptor 2C pre-mRNA generates miRNAs and is expressed in non-neuronal cells.

Zhang Z, Falaleeva M, Agranat-Tamir L, Pages A, Eyras E, Sperling J, Sperling R, Stamm S.

Exp Brain Res. 2013 Oct;230(4):387-94. doi: 10.1007/s00221-013-3458-8. Epub 2013 Mar 15.

PMID:
23494383
[PubMed - indexed for MEDLINE]
13.

Nucleosome-driven transcription factor binding and gene regulation.

Ballaré C, Castellano G, Gaveglia L, Althammer S, González-Vallinas J, Eyras E, Le Dily F, Zaurin R, Soronellas D, Vicent GP, Beato M.

Mol Cell. 2013 Jan 10;49(1):67-79. doi: 10.1016/j.molcel.2012.10.019. Epub 2012 Nov 21.

PMID:
23177737
[PubMed - indexed for MEDLINE]
Free Article
14.

Hog1 bypasses stress-mediated down-regulation of transcription by RNA polymerase II redistribution and chromatin remodeling.

Nadal-Ribelles M, Conde N, Flores O, González-Vallinas J, Eyras E, Orozco M, de Nadal E, Posas F.

Genome Biol. 2012 Nov 18;13(11):R106. doi: 10.1186/gb-2012-13-11-r106.

PMID:
23158682
[PubMed - in process]
Free PMC Article
15.

Predictive models of gene regulation from high-throughput epigenomics data.

Althammer S, Pagès A, Eyras E.

Comp Funct Genomics. 2012;2012:284786. doi: 10.1155/2012/284786. Epub 2012 Aug 13.

PMID:
22924024
[PubMed]
Free PMC Article
16.

DGCR8 HITS-CLIP reveals novel functions for the Microprocessor.

Macias S, Plass M, Stajuda A, Michlewski G, Eyras E, Cáceres JF.

Nat Struct Mol Biol. 2012 Aug;19(8):760-6. doi: 10.1038/nsmb.2344. Epub 2012 Jul 15.

PMID:
22796965
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

RNA secondary structure mediates alternative 3'ss selection in Saccharomyces cerevisiae.

Plass M, Codony-Servat C, Ferreira PG, Vilardell J, Eyras E.

RNA. 2012 Jun;18(6):1103-15. doi: 10.1261/rna.030767.111. Epub 2012 Apr 26.

PMID:
22539526
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Use of ChIP-Seq data for the design of a multiple promoter-alignment method.

Erb I, González-Vallinas JR, Bussotti G, Blanco E, Eyras E, Notredame C.

Nucleic Acids Res. 2012 Apr;40(7):e52. doi: 10.1093/nar/gkr1292. Epub 2012 Jan 9.

PMID:
22230796
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Key contribution of CPEB4-mediated translational control to cancer progression.

Ortiz-Zapater E, Pineda D, Martínez-Bosch N, Fernández-Miranda G, Iglesias M, Alameda F, Moreno M, Eliscovich C, Eyras E, Real FX, Méndez R, Navarro P.

Nat Med. 2011 Dec 4;18(1):83-90. doi: 10.1038/nm.2540.

PMID:
22138752
[PubMed - indexed for MEDLINE]
20.

Pyicos: a versatile toolkit for the analysis of high-throughput sequencing data.

Althammer S, González-Vallinas J, Ballaré C, Beato M, Eyras E.

Bioinformatics. 2011 Dec 15;27(24):3333-40. doi: 10.1093/bioinformatics/btr570. Epub 2011 Oct 12.

PMID:
21994224
[PubMed - indexed for MEDLINE]
Free PMC Article
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