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The Extent of mRNA Editing Is Limited in Chicken Liver and Adipose, but Impacted by Tissular Context, Genotype, Age, and Feeding as Exemplified with a Conserved Edited Site in COG3.

Roux PF, Frésard L, Boutin M, Leroux S, Klopp C, Djari A, Esquerré D, Martin PG, Zerjal T, Gourichon D, Pitel F, Lagarrigue S.

G3 (Bethesda). 2015 Dec 4;6(2):321-35. doi: 10.1534/g3.115.022251.


Genome-Wide Study of Structural Variants in Bovine Holstein, Montbéliarde and Normande Dairy Breeds.

Boussaha M, Esquerré D, Barbieri J, Djari A, Pinton A, Letaief R, Salin G, Escudié F, Roulet A, Fritz S, Samson F, Grohs C, Bernard M, Klopp C, Boichard D, Rocha D.

PLoS One. 2015 Aug 28;10(8):e0135931. doi: 10.1371/journal.pone.0135931. eCollection 2015.


Genome-Wide Characterization of RNA Editing in Chicken Embryos Reveals Common Features among Vertebrates.

Frésard L, Leroux S, Roux PF, Klopp C, Fabre S, Esquerré D, Dehais P, Djari A, Gourichon D, Lagarrigue S, Pitel F.

PLoS One. 2015 May 29;10(5):e0126776. doi: 10.1371/journal.pone.0126776. eCollection 2015.


Two new species of the Liolaemuselongatus-kriegi complex (Iguania, Liolaemidae) from Andean highlands of southern Chile.

Troncoso-Palacios J, Díaz HA, Esquerré D, Urra FA.

Zookeys. 2015 Apr 27;(500):83-109. doi: 10.3897/zookeys.500.8725. eCollection 2015.


Combined QTL and selective sweep mappings with coding SNP annotation and cis-eQTL analysis revealed PARK2 and JAG2 as new candidate genes for adiposity regulation.

Roux PF, Boitard S, Blum Y, Parks B, Montagner A, Mouisel E, Djari A, Esquerré D, Désert C, Boutin M, Leroux S, Lecerf F, Le Bihan-Duval E, Klopp C, Servin B, Pitel F, Duclos MJ, Guillou H, Lusis AJ, Demeure O, Lagarrigue S.

G3 (Bethesda). 2015 Feb 3;5(4):517-29. doi: 10.1534/g3.115.016865.


Comparison of whole-genome (13X) and capture (87X) resequencing methods for SNP and genotype callings.

Roux PF, Marthey S, Djari A, Moroldo M, Esquerré D, Estellé J, Klopp C, Lagarrigue S, Demeure O.

Anim Genet. 2015 Feb;46(1):82-6. doi: 10.1111/age.12248. Epub 2014 Dec 16.


Re-sequencing data for refining candidate genes and polymorphisms in QTL regions affecting adiposity in chicken.

Roux PF, Boutin M, Désert C, Djari A, Esquerré D, Klopp C, Lagarrigue S, Demeure O.

PLoS One. 2014 Oct 21;9(10):e111299. doi: 10.1371/journal.pone.0111299. eCollection 2014.


Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle.

Daetwyler HD, Capitan A, Pausch H, Stothard P, van Binsbergen R, Brøndum RF, Liao X, Djari A, Rodriguez SC, Grohs C, Esquerré D, Bouchez O, Rossignol MN, Klopp C, Rocha D, Fritz S, Eggen A, Bowman PJ, Coote D, Chamberlain AJ, Anderson C, VanTassell CP, Hulsegge I, Goddard ME, Guldbrandtsen B, Lund MS, Veerkamp RF, Boichard DA, Fries R, Hayes BJ.

Nat Genet. 2014 Aug;46(8):858-65. doi: 10.1038/ng.3034. Epub 2014 Jul 13.


Direct effects of incubation temperature on morphology, thermoregulatory behaviour and locomotor performance in jacky dragons (Amphibolurus muricatus).

Esquerré D, Keogh JS, Schwanz LE.

J Therm Biol. 2014 Jul;43:33-9. doi: 10.1016/j.jtherbio.2014.04.007. Epub 2014 May 5.


Identification of large intergenic non-coding RNAs in bovine muscle using next-generation transcriptomic sequencing.

Billerey C, Boussaha M, Esquerré D, Rebours E, Djari A, Meersseman C, Klopp C, Gautheret D, Rocha D.

BMC Genomics. 2014 Jun 19;15:499. doi: 10.1186/1471-2164-15-499.


The missing leopard lizard: Liolaemus ubaghsi sp. nov., a new species of the leopardinus clade (Reptilia: Squamata: Liolaemidae) from the Andes of the O'Higgins Region in Chile.

Esquerré D, Troncoso-Palacios J, Garín CF, Núnez H.

Zootaxa. 2014 Jun 17;(3815):507-25. doi: 10.11646/zootaxa.3815.4.3.


Involvement of mitochondrial dysfunction and ER-stress in the physiopathology of equine osteochondritis dissecans (OCD).

Desjardin C, Chat S, Gilles M, Legendre R, Riviere J, Mata X, Balliau T, Esquerré D, Cribiu EP, Betch JM, Schibler L.

Exp Mol Pathol. 2014 Jun;96(3):328-38. doi: 10.1016/j.yexmp.2014.03.004. Epub 2014 Mar 20.


Extensive expression differences along porcine small intestine evidenced by transcriptome sequencing.

Mach N, Berri M, Esquerré D, Chevaleyre C, Lemonnier G, Billon Y, Lepage P, Oswald IP, Doré J, Rogel-Gaillard C, Estellé J.

PLoS One. 2014 Feb 12;9(2):e88515. doi: 10.1371/journal.pone.0088515. eCollection 2014.


Unilateral once daily milking locally induces differential gene expression in both mammary tissue and milk epithelial cells revealing mammary remodeling.

Boutinaud M, Galio L, Lollivier V, Finot L, Wiart S, Esquerré D, Devinoy E.

Physiol Genomics. 2013 Oct 16;45(20):973-85. doi: 10.1152/physiolgenomics.00059.2013. Epub 2013 Aug 27.


Detection of haplotypes associated with prenatal death in dairy cattle and identification of deleterious mutations in GART, SHBG and SLC37A2.

Fritz S, Capitan A, Djari A, Rodriguez SC, Barbat A, Baur A, Grohs C, Weiss B, Boussaha M, Esquerré D, Klopp C, Rocha D, Boichard D.

PLoS One. 2013 Jun 7;8(6):e65550. doi: 10.1371/journal.pone.0065550. Print 2013.


Novel insights into the bovine polled phenotype and horn ontogenesis in Bovidae.

Allais-Bonnet A, Grohs C, Medugorac I, Krebs S, Djari A, Graf A, Fritz S, Seichter D, Baur A, Russ I, Bouet S, Rothammer S, Wahlberg P, Esquerré D, Hoze C, Boussaha M, Weiss B, Thépot D, Fouilloux MN, Rossignol MN, van Marle-Köster E, Hreiðarsdóttir GE, Barbey S, Dozias D, Cobo E, Reversé P, Catros O, Marchand JL, Soulas P, Roy P, Marquant-Leguienne B, Le Bourhis D, Clément L, Salas-Cortes L, Venot E, Pannetier M, Phocas F, Klopp C, Rocha D, Fouchet M, Journaux L, Bernard-Capel C, Ponsart C, Eggen A, Blum H, Gallard Y, Boichard D, Pailhoux E, Capitan A.

PLoS One. 2013 May 22;8(5):e63512. doi: 10.1371/journal.pone.0063512. Print 2013.


Gene-based single nucleotide polymorphism discovery in bovine muscle using next-generation transcriptomic sequencing.

Djari A, Esquerré D, Weiss B, Martins F, Meersseman C, Boussaha M, Klopp C, Rocha D.

BMC Genomics. 2013 May 7;14:307. doi: 10.1186/1471-2164-14-307.


A 3.7 Mb deletion encompassing ZEB2 causes a novel polled and multisystemic syndrome in the progeny of a somatic mosaic bull.

Capitan A, Allais-Bonnet A, Pinton A, Marquant-Le Guienne B, Le Bourhis D, Grohs C, Bouet S, Clément L, Salas-Cortes L, Venot E, Chaffaux S, Weiss B, Delpeuch A, Noé G, Rossignol MN, Barbey S, Dozias D, Cobo E, Barasc H, Auguste A, Pannetier M, Deloche MC, Lhuilier E, Bouchez O, Esquerré D, Salin G, Klopp C, Donnadieu C, Chantry-Darmon C, Hayes H, Gallard Y, Ponsart C, Boichard D, Pailhoux E.

PLoS One. 2012;7(11):e49084. doi: 10.1371/journal.pone.0049084. Epub 2012 Nov 9.


Development and characterisation of an expressed sequence tags (EST)-derived single nucleotide polymorphisms (SNPs) resource in rainbow trout.

Boussaha M, Guyomard R, Cabau C, Esquerré D, Quillet E.

BMC Genomics. 2012 Jun 13;13:238. doi: 10.1186/1471-2164-13-238.

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