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Results: 1 to 20 of 111

1.

Accurate viral population assembly from ultra-deep sequencing data.

Mangul S, Wu NC, Mancuso N, Zelikovsky A, Sun R, Eskin E.

Bioinformatics. 2014 Jun 15;30(12):i329-i337. doi: 10.1093/bioinformatics/btu295.

PMID:
24932001
[PubMed - in process]
Free PMC Article
2.

Privacy preserving protocol for detecting genetic relatives using rare variants.

Hormozdiari F, Joo JW, Wadia A, Guan F, Ostrosky R, Sahai A, Eskin E.

Bioinformatics. 2014 Jun 15;30(12):i204-i211. doi: 10.1093/bioinformatics/btu294.

PMID:
24931985
[PubMed - in process]
Free PMC Article
3.

Allele-specific expression and eQTL analysis in mouse adipose tissue.

Hasin-Brumshtein Y, Hormozdiari F, Martin L, van Nas A, Eskin E, Lusis AJ, Drake TA.

BMC Genomics. 2014 Jun 13;15:471. doi: 10.1186/1471-2164-15-471.

PMID:
24927774
[PubMed - in process]
Free Article
4.

Effectively identifying regulatory hotspots while capturing expression heterogeneity in gene expression studies.

Joo JW, Sul JH, Han B, Ye C, Eskin E.

Genome Biol. 2014 Apr 7;15(4):R61. [Epub ahead of print]

PMID:
24708878
[PubMed - as supplied by publisher]
Free PMC Article
5.

Identifying genetic relatives without compromising privacy.

He D, Furlotte NA, Hormozdiari F, Joo JW, Wadia A, Ostrovsky R, Sahai A, Eskin E.

Genome Res. 2014 Apr;24(4):664-72. doi: 10.1101/gr.153346.112. Epub 2014 Mar 10.

PMID:
24614977
[PubMed - in process]
6.

Genome-wide association study for age-related hearing loss (AHL) in the mouse: a meta-analysis.

Ohmen J, Kang EY, Li X, Joo JW, Hormozdiari F, Zheng QY, Davis RC, Lusis AJ, Eskin E, Friedman RA.

J Assoc Res Otolaryngol. 2014 Jun;15(3):335-52. doi: 10.1007/s10162-014-0443-2. Epub 2014 Feb 26.

PMID:
24570207
[PubMed - in process]
7.

Genetic implication of a novel thiamine transporter in human hypertension.

Zhang K, Huentelman MJ, Rao F, Sun EI, Corneveaux JJ, Schork AJ, Wei Z, Waalen J, Miramontes-Gonzalez JP, Hightower CM, Maihofer AX, Mahata M, Pastinen T, Ehret GB; International Consortium for Blood Pressure Genome-Wide Association Studies, Schork NJ, Eskin E, Nievergelt CM, Saier MH Jr, O'Connor DT.

J Am Coll Cardiol. 2014 Apr 22;63(15):1542-55. doi: 10.1016/j.jacc.2014.01.007. Epub 2014 Feb 5.

PMID:
24509276
[PubMed - indexed for MEDLINE]
8.

Meta-analysis identifies gene-by-environment interactions as demonstrated in a study of 4,965 mice.

Kang EY, Han B, Furlotte N, Joo JW, Shih D, Davis RC, Lusis AJ, Eskin E.

PLoS Genet. 2014 Jan;10(1):e1004022. doi: 10.1371/journal.pgen.1004022. Epub 2014 Jan 9.

PMID:
24415945
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Diversity, differentiation, and linkage disequilibrium: prospects for association mapping in the malaria vector Anopheles arabiensis.

Marsden CD, Lee Y, Kreppel K, Weakley A, Cornel A, Ferguson HM, Eskin E, Lanzaro GC.

G3 (Bethesda). 2014 Jan 10;4(1):121-31. doi: 10.1534/g3.113.008326.

PMID:
24281424
[PubMed - in process]
Free PMC Article
10.

Fast pairwise IBD association testing in genome-wide association studies.

Han B, Kang EY, Raychaudhuri S, de Bakker PI, Eskin E.

Bioinformatics. 2014 Jan 15;30(2):206-13. doi: 10.1093/bioinformatics/btt609. Epub 2013 Oct 24.

PMID:
24158599
[PubMed - indexed for MEDLINE]
11.

eALPS: estimating abundance levels in pooled sequencing using available genotyping data.

Eskin I, Hormozdiari F, Conde L, Riby J, Skibola CF, Eskin E, Halperin E.

J Comput Biol. 2013 Nov;20(11):861-77. doi: 10.1089/cmb.2013.0105. Epub 2013 Oct 21.

PMID:
24144111
[PubMed - indexed for MEDLINE]
12.

IPED: inheritance path-based pedigree reconstruction algorithm using genotype data.

He D, Wang Z, Han B, Parida L, Eskin E.

J Comput Biol. 2013 Oct;20(10):780-91. doi: 10.1089/cmb.2013.0080.

PMID:
24093229
[PubMed - indexed for MEDLINE]
13.

Efficiently identifying significant associations in genome-wide association studies.

Kostem E, Eskin E.

J Comput Biol. 2013 Oct;20(10):817-30. doi: 10.1089/cmb.2013.0087. Epub 2013 Sep 14.

PMID:
24033261
[PubMed - indexed for MEDLINE]
14.

Analysis of allele-specific expression in mouse liver by RNA-Seq: a comparison with Cis-eQTL identified using genetic linkage.

Lagarrigue S, Martin L, Hormozdiari F, Roux PF, Pan C, van Nas A, Demeure O, Cantor R, Ghazalpour A, Eskin E, Lusis AJ.

Genetics. 2013 Nov;195(3):1157-66. doi: 10.1534/genetics.113.153882. Epub 2013 Sep 11.

PMID:
24026101
[PubMed - indexed for MEDLINE]
15.

Leveraging reads that span multiple single nucleotide polymorphisms for haplotype inference from sequencing data.

Yang WY, Hormozdiari F, Wang Z, He D, Pasaniuc B, Eskin E.

Bioinformatics. 2013 Sep 15;29(18):2245-52. doi: 10.1093/bioinformatics/btt386. Epub 2013 Jul 3.

PMID:
23825370
[PubMed - indexed for MEDLINE]
16.

Effectively identifying eQTLs from multiple tissues by combining mixed model and meta-analytic approaches.

Sul JH, Han B, Ye C, Choi T, Eskin E.

PLoS Genet. 2013 Jun;9(6):e1003491. doi: 10.1371/journal.pgen.1003491. Epub 2013 Jun 13.

PMID:
23785294
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Rare variant association testing under low-coverage sequencing.

Navon O, Sul JH, Han B, Conde L, Bracci PM, Riby J, Skibola CF, Eskin E, Halperin E.

Genetics. 2013 Jul;194(3):769-79. doi: 10.1534/genetics.113.150169. Epub 2013 May 1.

PMID:
23636738
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Functional genomic assessment of phosgene-induced acute lung injury in mice.

Leikauf GD, Concel VJ, Bein K, Liu P, Berndt A, Martin TM, Ganguly K, Jang AS, Brant KA, Dopico RA Jr, Upadhyay S, Cario C, Di YP, Vuga LJ, Kostem E, Eskin E, You M, Kaminski N, Prows DR, Knoell DL, Fabisiak JP.

Am J Respir Cell Mol Biol. 2013 Sep;49(3):368-83. doi: 10.1165/rcmb.2012-0337OC.

PMID:
23590305
[PubMed - indexed for MEDLINE]
19.

Improving the accuracy and efficiency of partitioning heritability into the contributions of genomic regions.

Kostem E, Eskin E.

Am J Hum Genet. 2013 Apr 4;92(4):558-64. doi: 10.1016/j.ajhg.2013.03.010.

PMID:
23561845
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Mixed models can correct for population structure for genomic regions under selection.

Sul JH, Eskin E.

Nat Rev Genet. 2013 Apr;14(4):300. doi: 10.1038/nrg2813-c1. Epub 2013 Feb 26. No abstract available.

PMID:
23438871
[PubMed - indexed for MEDLINE]

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