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Results: 1 to 20 of 63

1.

Computational methods and opportunities for phosphorylation network medicine.

Chen YA, Eschrich SA.

Transl Cancer Res. 2014 Jun 1;3(3):266-278.

PMID:
25530950
[PubMed]
Free PMC Article
2.

Expanding epigenomics to archived FFPE tissues: an evaluation of DNA repair methodologies.

Siegel EM, Berglund AE, Riggs BM, Eschrich SA, Putney RM, Ajidahun AO, Coppola D, Shibata D.

Cancer Epidemiol Biomarkers Prev. 2014 Dec;23(12):2622-31. doi: 10.1158/1055-9965.EPI-14-0464.

PMID:
25472669
[PubMed - in process]
3.

Epigenomic characterization of locally advanced anal cancer: a radiation therapy oncology group 98-11 specimen study.

Siegel EM, Eschrich S, Winter K, Riggs B, Berglund A, Ajidahun A, Simko J, Moughan J, Ajani J, Magliocco A, Elahi A, Hoffe S, Shibata D.

Dis Colon Rectum. 2014 Aug;57(8):941-57. doi: 10.1097/DCR.0000000000000160.

PMID:
25003289
[PubMed - indexed for MEDLINE]
4.

Test-retest reproducibility analysis of lung CT image features.

Balagurunathan Y, Kumar V, Gu Y, Kim J, Wang H, Liu Y, Goldgof DB, Hall LO, Korn R, Zhao B, Schwartz LH, Basu S, Eschrich S, Gatenby RA, Gillies RJ.

J Digit Imaging. 2014 Dec;27(6):805-23. doi: 10.1007/s10278-014-9716-x.

PMID:
24990346
[PubMed - in process]
5.

Quantification of peptides from immunoglobulin constant and variable regions by LC-MRM MS for assessment of multiple myeloma patients.

Remily-Wood ER, Benson K, Baz RC, Chen YA, Hussein M, Hartley-Brown MA, Sprung RW, Perez B, Liu RZ, Yoder SJ, Teer JK, Eschrich SA, Koomen JM.

Proteomics Clin Appl. 2014 Oct;8(9-10):783-95. doi: 10.1002/prca.201300077. Epub 2014 Sep 15.

PMID:
24723328
[PubMed - in process]
6.

Perturbation of the mutated EGFR interactome identifies vulnerabilities and resistance mechanisms.

Li J, Bennett K, Stukalov A, Fang B, Zhang G, Yoshida T, Okamoto I, Kim JY, Song L, Bai Y, Qian X, Rawal B, Schell M, Grebien F, Winter G, Rix U, Eschrich S, Colinge J, Koomen J, Superti-Furga G, Haura EB.

Mol Syst Biol. 2013 Nov 5;9:705. doi: 10.1038/msb.2013.61.

PMID:
24189400
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Development and application of a novel metric to assess effectiveness of biomedical data.

Bloom GC, Eschrich S, Han G, Schabath MB, Bhansali N, Hoerter AM, Morgan S, Fenstermacher DA.

BMJ Open. 2013 Aug 23;3(8):e003220. doi: 10.1136/bmjopen-2013-003220. Erratum in: BMJ Open. 2013;3(9):e003220corr1. Hang, Gang [corrected to Han, Gang].

PMID:
23975264
[PubMed]
Free PMC Article
8.

Dissection of TBK1 signaling via phosphoproteomics in lung cancer cells.

Kim JY, Welsh EA, Oguz U, Fang B, Bai Y, Kinose F, Bronk C, Remsing Rix LL, Beg AA, Rix U, Eschrich SA, Koomen JM, Haura EB.

Proc Natl Acad Sci U S A. 2013 Jul 23;110(30):12414-9. doi: 10.1073/pnas.1220674110. Epub 2013 Jul 8.

PMID:
23836654
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Iterative rank-order normalization of gene expression microarray data.

Welsh EA, Eschrich SA, Berglund AE, Fenstermacher DA.

BMC Bioinformatics. 2013 May 7;14:153. doi: 10.1186/1471-2105-14-153.

PMID:
23647742
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

DNA methylation profiling across the spectrum of HPV-associated anal squamous neoplasia.

Hernandez JM, Siegel EM, Riggs B, Eschrich S, Elahi A, Qu X, Ajidahun A, Berglund A, Coppola D, Grady WM, Giuliano AR, Shibata D.

PLoS One. 2012;7(11):e50533. doi: 10.1371/journal.pone.0050533. Epub 2012 Nov 30.

PMID:
23226306
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

12-Chemokine gene signature identifies lymph node-like structures in melanoma: potential for patient selection for immunotherapy?

Messina JL, Fenstermacher DA, Eschrich S, Qu X, Berglund AE, Lloyd MC, Schell MJ, Sondak VK, Weber JS, Mulé JJ.

Sci Rep. 2012;2:765. doi: 10.1038/srep00765. Epub 2012 Oct 24.

PMID:
23097687
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

The metabolomic signature of malignant glioma reflects accelerated anabolic metabolism.

Chinnaiyan P, Kensicki E, Bloom G, Prabhu A, Sarcar B, Kahali S, Eschrich S, Qu X, Forsyth P, Gillies R.

Cancer Res. 2012 Nov 15;72(22):5878-88. doi: 10.1158/0008-5472.CAN-12-1572-T. Epub 2012 Oct 1.

PMID:
23026133
[PubMed - indexed for MEDLINE]
Free Article
13.

Radiomics: the process and the challenges.

Kumar V, Gu Y, Basu S, Berglund A, Eschrich SA, Schabath MB, Forster K, Aerts HJ, Dekker A, Fenstermacher D, Goldgof DB, Hall LO, Lambin P, Balagurunathan Y, Gatenby RA, Gillies RJ.

Magn Reson Imaging. 2012 Nov;30(9):1234-48. doi: 10.1016/j.mri.2012.06.010. Epub 2012 Aug 13. Review.

PMID:
22898692
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Validation of a radiosensitivity molecular signature in breast cancer.

Eschrich SA, Fulp WJ, Pawitan Y, Foekens JA, Smid M, Martens JW, Echevarria M, Kamath V, Lee JH, Harris EE, Bergh J, Torres-Roca JF.

Clin Cancer Res. 2012 Sep 15;18(18):5134-43. Epub 2012 Jul 25.

PMID:
22832933
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Informatics methods to enable sharing of quantitative imaging research data.

Levy MA, Freymann JB, Kirby JS, Fedorov A, Fennessy FM, Eschrich SA, Berglund AE, Fenstermacher DA, Tan Y, Guo X, Casavant TL, Brown BJ, Braun TA, Dekker A, Roelofs E, Mountz JM, Boada F, Laymon C, Oborski M, Rubin DL.

Magn Reson Imaging. 2012 Nov;30(9):1249-56. doi: 10.1016/j.mri.2012.04.007. Epub 2012 Jul 6.

PMID:
22770688
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Phosphoproteomics identifies driver tyrosine kinases in sarcoma cell lines and tumors.

Bai Y, Li J, Fang B, Edwards A, Zhang G, Bui M, Eschrich S, Altiok S, Koomen J, Haura EB.

Cancer Res. 2012 May 15;72(10):2501-11. doi: 10.1158/0008-5472.CAN-11-3015. Epub 2012 Mar 29.

PMID:
22461510
[PubMed - indexed for MEDLINE]
Free Article
17.

Smad4-mediated signaling inhibits intestinal neoplasia by inhibiting expression of β-catenin.

Freeman TJ, Smith JJ, Chen X, Washington MK, Roland JT, Means AL, Eschrich SA, Yeatman TJ, Deane NG, Beauchamp RD.

Gastroenterology. 2012 Mar;142(3):562-571.e2. doi: 10.1053/j.gastro.2011.11.026. Epub 2011 Nov 22.

PMID:
22115830
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Necdin, a negative growth regulator, is a novel STAT3 target gene down-regulated in human cancer.

Haviland R, Eschrich S, Bloom G, Ma Y, Minton S, Jove R, Cress WD.

PLoS One. 2011;6(10):e24923. doi: 10.1371/journal.pone.0024923. Epub 2011 Oct 27.

PMID:
22046235
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

BVES regulates EMT in human corneal and colon cancer cells and is silenced via promoter methylation in human colorectal carcinoma.

Williams CS, Zhang B, Smith JJ, Jayagopal A, Barrett CW, Pino C, Russ P, Presley SH, Peng D, Rosenblatt DO, Haselton FR, Yang JL, Washington MK, Chen X, Eschrich S, Yeatman TJ, El-Rifai W, Beauchamp RD, Chang MS.

J Clin Invest. 2011 Oct;121(10):4056-69. doi: 10.1172/JCI44228. Epub 2011 Sep 12.

PMID:
21911938
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Claudin-1 up-regulates the repressor ZEB-1 to inhibit E-cadherin expression in colon cancer cells.

Singh AB, Sharma A, Smith JJ, Krishnan M, Chen X, Eschrich S, Washington MK, Yeatman TJ, Beauchamp RD, Dhawan P.

Gastroenterology. 2011 Dec;141(6):2140-53. doi: 10.1053/j.gastro.2011.08.038. Epub 2011 Aug 28.

PMID:
21878201
[PubMed - indexed for MEDLINE]
Free PMC Article
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