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A SOS regulon under control of a non-canonical LexA-binding motif in the Betaproteobacteria.

Sanchez-Alberola N, Campoy S, Emerson D, Barbé J, Erill I.

J Bacteriol. 2015 May 18. pii: JB.00035-15. [Epub ahead of print]


Identification and characterization of VpsR and VpsT binding sites in Vibrio cholerae.

Zamorano-Sánchez D, Fong JC, Kilic S, Erill I, Yildiz FH.

J Bacteriol. 2015 Apr;197(7):1221-35. doi: 10.1128/JB.02439-14. Epub 2015 Jan 26.


Informational requirements for transcriptional regulation.

O'Neill PK, Forder R, Erill I.

J Comput Biol. 2014 May;21(5):373-84. doi: 10.1089/cmb.2014.0032. Epub 2014 Apr 1.


Characterization of the SOS meta-regulon in the human gut microbiome.

Cornish JP, Sanchez-Alberola N, O'Neill PK, O'Keefe R, Gheba J, Erill I.

Bioinformatics. 2014 May 1;30(9):1193-7. doi: 10.1093/bioinformatics/btt753. Epub 2014 Jan 8.


Genome-scale analyses of Escherichia coli and Salmonella enterica AraC reveal noncanonical targets and an expanded core regulon.

Stringer AM, Currenti S, Bonocora RP, Baranowski C, Petrone BL, Palumbo MJ, Reilly AA, Zhang Z, Erill I, Wade JT.

J Bacteriol. 2014 Feb;196(3):660-71. doi: 10.1128/JB.01007-13. Epub 2013 Nov 22.


CollecTF: a database of experimentally validated transcription factor-binding sites in Bacteria.

Kiliç S, White ER, Sagitova DM, Cornish JP, Erill I.

Nucleic Acids Res. 2014 Jan;42(Database issue):D156-60. doi: 10.1093/nar/gkt1123. Epub 2013 Nov 14.


scnRCA: a novel method to detect consistent patterns of translational selection in mutationally-biased genomes.

O'Neill PK, Or M, Erill I.

PLoS One. 2013 Oct 7;8(10):e76177. doi: 10.1371/journal.pone.0076177. eCollection 2013.


Inference of self-regulated transcriptional networks by comparative genomics.

Cornish JP, Matthews F, Thomas JR, Erill I.

Evol Bioinform Online. 2012;8:449-61. doi: 10.4137/EBO.S9205. Epub 2012 Aug 6.


BioWord: a sequence manipulation suite for Microsoft Word.

Anzaldi LJ, Muñoz-Fernández D, Erill I.

BMC Bioinformatics. 2012 Jun 7;13:124. doi: 10.1186/1471-2105-13-124.


Analysis of the SOS response of Vibrio and other bacteria with multiple chromosomes.

Sanchez-Alberola N, Campoy S, Barbé J, Erill I.

BMC Genomics. 2012 Feb 3;13:58. doi: 10.1186/1471-2164-13-58.


Prevalence of SOS-mediated control of integron integrase expression as an adaptive trait of chromosomal and mobile integrons.

Cambray G, Sanchez-Alberola N, Campoy S, Guerin E, Da Re S, González-Zorn B, Ploy MC, Barbé J, Mazel D, Erill I.

Mob DNA. 2011 Apr 30;2(1):6. doi: 10.1186/1759-8753-2-6.


xFITOM: a generic GUI tool to search for transcription factor binding sites.

Bhargava N, Erill I.

Bioinformation. 2010 Jul 6;5(2):49-51.


Relative codon adaptation: a generic codon bias index for prediction of gene expression.

Fox JM, Erill I.

DNA Res. 2010 Jun;17(3):185-96. doi: 10.1093/dnares/dsq012. Epub 2010 May 7.


A rapid and reliable means of assessing hepatic steatosis in vivo via electrical bioimpedance.

Hessheimer AJ, Parramón D, Guimerà A, Erill I, Rimola A, García-Valdecasas JC, Villa R, Fondevila C.

Transplantation. 2009 Sep 15;88(5):716-22. doi: 10.1097/TP.0b013e3181b391c0.


The SOS response controls integron recombination.

Guerin E, Cambray G, Sanchez-Alberola N, Campoy S, Erill I, Da Re S, Gonzalez-Zorn B, Barbé J, Ploy MC, Mazel D.

Science. 2009 May 22;324(5930):1034. doi: 10.1126/science.1172914.


A reexamination of information theory-based methods for DNA-binding site identification.

Erill I, O'Neill MC.

BMC Bioinformatics. 2009 Feb 11;10:57. doi: 10.1186/1471-2105-10-57.


Cohabitation of two different lexA regulons in Pseudomonas putida.

Abella M, Campoy S, Erill I, Rojo F, Barbé J.

J Bacteriol. 2007 Dec;189(24):8855-62. Epub 2007 Oct 12.


Aeons of distress: an evolutionary perspective on the bacterial SOS response.

Erill I, Campoy S, Barbé J.

FEMS Microbiol Rev. 2007 Nov;31(6):637-56. Epub 2007 Sep 18. Review.


In vivo detection of liver steatosis in rats based on impedance spectroscopy.

Parramon D, Erill I, Guimerà A, Ivorra A, Muñoz A, Sola A, Fondevila C, García-Valdecasas JC, Villa R.

Physiol Meas. 2007 Aug;28(8):813-28. Epub 2007 Jul 6.


Induction of the SOS response by bacteriophage lytic development in Salmonella enterica.

Campoy S, Hervàs A, Busquets N, Erill I, Teixidó L, Barbé J.

Virology. 2006 Aug 1;351(2):360-7. Epub 2006 May 19.

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