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Results: 1 to 20 of 58

1.

Relevance of different prior knowledge sources for inferring gene interaction networks.

Olsen C, Bontempi G, Emmert-Streib F, Quackenbush J, Haibe-Kains B.

Front Genet. 2014 Jun 24;5:177. doi: 10.3389/fgene.2014.00177. eCollection 2014.

PMID:
25009552
[PubMed]
Free PMC Article
2.

NetBioV: an R package for visualizing large network data in biology and medicine.

Tripathi S, Dehmer M, Emmert-Streib F.

Bioinformatics. 2014 Jun 12. pii: btu384. [Epub ahead of print]

PMID:
24928209
[PubMed - as supplied by publisher]
3.

Enhancing our understanding of ways to analyze metagenomes.

Emmert-Streib F.

Front Genet. 2014 Apr 29;5:108. doi: 10.3389/fgene.2014.00108. eCollection 2014. No abstract available.

PMID:
24808910
[PubMed]
Free PMC Article
4.

Interrelations of graph distance measures based on topological indices.

Dehmer M, Emmert-Streib F, Shi Y.

PLoS One. 2014 Apr 23;9(4):e94985. doi: 10.1371/journal.pone.0094985. eCollection 2014.

PMID:
24759679
[PubMed - in process]
Free PMC Article
5.

Inference and validation of predictive gene networks from biomedical literature and gene expression data.

Olsen C, Fleming K, Prendergast N, Rubio R, Emmert-Streib F, Bontempi G, Haibe-Kains B, Quackenbush J.

Genomics. 2014 May-Jun;103(5-6):329-36. doi: 10.1016/j.ygeno.2014.03.004. Epub 2014 Mar 29.

PMID:
24691108
[PubMed - in process]
Free Article
6.

The gene regulatory network for breast cancer: integrated regulatory landscape of cancer hallmarks.

Emmert-Streib F, de Matos Simoes R, Mullan P, Haibe-Kains B, Dehmer M.

Front Genet. 2014 Feb 3;5:15. doi: 10.3389/fgene.2014.00015. eCollection 2014.

PMID:
24550935
[PubMed]
Free PMC Article
7.

Netmes: assessing gene network inference algorithms by network-based measures.

Altay G, Kurt Z, Dehmer M, Emmert-Streib F.

Evol Bioinform Online. 2014 Feb 6;10:1-9. doi: 10.4137/EBO.S13481. eCollection 2014.

PMID:
24526830
[PubMed]
Free PMC Article
8.

Dry computational approaches for wet medical problems.

Emmert-Streib F, Zhang SD, Hamilton P.

J Transl Med. 2014 Jan 25;12:26. doi: 10.1186/1479-5876-12-26.

PMID:
24460894
[PubMed - in process]
Free PMC Article
9.

Large-scale evaluation of molecular descriptors by means of clustering.

Dehmer M, Emmert-Streib F, Tripathi S.

PLoS One. 2013 Dec 31;8(12):e83956. doi: 10.1371/journal.pone.0083956. eCollection 2013.

PMID:
24391854
[PubMed - in process]
Free PMC Article
10.

B-cell lymphoma gene regulatory networks: biological consistency among inference methods.

de Matos Simoes R, Dehmer M, Emmert-Streib F.

Front Genet. 2013 Dec 16;4:281. doi: 10.3389/fgene.2013.00281. eCollection 2013.

PMID:
24379827
[PubMed]
Free PMC Article
11.

Enhancing systems medicine beyond genotype data by dynamic patient signatures: having information and using it too.

Emmert-Streib F, Dehmer M.

Front Genet. 2013 Nov 19;4:241. doi: 10.3389/fgene.2013.00241. eCollection 2013.

PMID:
24312119
[PubMed]
Free PMC Article
12.

Gene Sets Net Correlations Analysis (GSNCA): a multivariate differential coexpression test for gene sets.

Rahmatallah Y, Emmert-Streib F, Glazko G.

Bioinformatics. 2014 Feb 1;30(3):360-8. doi: 10.1093/bioinformatics/btt687. Epub 2013 Nov 30.

PMID:
24292935
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Quantitative network measures as biomarkers for classifying prostate cancer disease states: a systems approach to diagnostic biomarkers.

Dehmer M, Mueller LA, Emmert-Streib F.

PLoS One. 2013 Nov 13;8(11):e77602. doi: 10.1371/journal.pone.0077602. eCollection 2013.

PMID:
24236006
[PubMed - in process]
Free PMC Article
14.

[COMMODE] a large-scale database of molecular descriptors using compounds from PubChem.

Dander A, Mueller LA, Gallasch R, Pabinger S, Emmert-Streib F, Graber A, Dehmer M.

Source Code Biol Med. 2013 Nov 13;8(1):22. doi: 10.1186/1751-0473-8-22.

PMID:
24225386
[PubMed]
Free PMC Article
15.

Network nursing: connections between nursing and complex network science.

Dehmer M, Hackl WO, Emmert-Streib F, Schulc E, Them C.

Int J Nurs Knowl. 2013 Oct;24(3):150-6. doi: 10.1111/j.2047-3095.2013.01246.x. Epub 2013 May 30.

PMID:
23721253
[PubMed - indexed for MEDLINE]
16.

Interfacing cellular networks of S. cerevisiae and E. coli: connecting dynamic and genetic information.

de Matos Simoes R, Dehmer M, Emmert-Streib F.

BMC Genomics. 2013 May 11;14:324. doi: 10.1186/1471-2164-14-324.

PMID:
23663484
[PubMed - indexed for MEDLINE]
Free PMC Article
17.
18.

Structural properties and complexity of a new network class: Collatz step graphs.

Emmert-Streib F.

PLoS One. 2013;8(2):e56461. doi: 10.1371/journal.pone.0056461. Epub 2013 Feb 19.

PMID:
23431377
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Ensuring the statistical soundness of competitive gene set approaches: gene filtering and genome-scale coverage are essential.

Tripathi S, Glazko GV, Emmert-Streib F.

Nucleic Acids Res. 2013 Apr;41(7):e82. doi: 10.1093/nar/gkt054. Epub 2013 Feb 6.

PMID:
23389952
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Collectives of diagnostic biomarkers identify high-risk subpopulations of hematuria patients: exploiting heterogeneity in large-scale biomarker data.

Emmert-Streib F, Abogunrin F, de Matos Simoes R, Duggan B, Ruddock MW, Reid CN, Roddy O, White L, O'Kane HF, O'Rourke D, Anderson NH, Nambirajan T, Williamson KE.

BMC Med. 2013 Jan 17;11:12. doi: 10.1186/1741-7015-11-12.

PMID:
23327460
[PubMed - indexed for MEDLINE]
Free PMC Article

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