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Results: 1 to 20 of 239

1.

Phylogenomic analyses data of the avian phylogenomics project.

Jarvis ED, Mirarab S, Aberer AJ, Li B, Houde P, Li C, Ho SY, Faircloth BC, Nabholz B, Howard JT, Suh A, Weber CC, da Fonseca RR, Alfaro-Núñez A, Narula N, Liu L, Burt D, Ellegren H, Edwards SV, Stamatakis A, Mindell DP, Cracraft J, Braun EL, Warnow T, Jun W, Gilbert MT, Zhang G; Avian Phylogenomics Consortium.

Gigascience. 2015 Feb 12;4:4. doi: 10.1186/s13742-014-0038-1. eCollection 2015.

2.

Two Antarctic penguin genomes reveal insights into their evolutionary history and molecular changes related to the Antarctic environment.

Li C, Zhang Y, Li J, Kong L, Hu H, Pan H, Xu L, Deng Y, Li Q, Jin L, Yu H, Chen Y, Liu B, Yang L, Liu S, Zhang Y, Lang Y, Xia J, He W, Shi Q, Subramanian S, Millar CD, Meader S, Rands CM, Fujita MK, Greenwold MJ, Castoe TA, Pollock DD, Gu W, Nam K, Ellegren H, Ho SY, Burt DW, Ponting CP, Jarvis ED, Gilbert MT, Yang H, Wang J, Lambert DM, Wang J, Zhang G.

Gigascience. 2014 Dec 12;3(1):27. doi: 10.1186/2047-217X-3-27. eCollection 2014.

3.
4.

Evolutionary Consequences of DNA Methylation on the GC Content in Vertebrate Genomes.

Mugal CF, Arndt PF, Holm L, Ellegren H.

G3 (Bethesda). 2015 Jan 15;5(3):441-7. doi: 10.1534/g3.114.015545.

5.

Whole-genome analyses resolve early branches in the tree of life of modern birds.

Jarvis ED, Mirarab S, Aberer AJ, Li B, Houde P, Li C, Ho SY, Faircloth BC, Nabholz B, Howard JT, Suh A, Weber CC, da Fonseca RR, Li J, Zhang F, Li H, Zhou L, Narula N, Liu L, Ganapathy G, Boussau B, Bayzid MS, Zavidovych V, Subramanian S, Gabaldón T, Capella-Gutiérrez S, Huerta-Cepas J, Rekepalli B, Munch K, Schierup M, Lindow B, Warren WC, Ray D, Green RE, Bruford MW, Zhan X, Dixon A, Li S, Li N, Huang Y, Derryberry EP, Bertelsen MF, Sheldon FH, Brumfield RT, Mello CV, Lovell PV, Wirthlin M, Schneider MP, Prosdocimi F, Samaniego JA, Vargas Velazquez AM, Alfaro-Núñez A, Campos PF, Petersen B, Sicheritz-Ponten T, Pas A, Bailey T, Scofield P, Bunce M, Lambert DM, Zhou Q, Perelman P, Driskell AC, Shapiro B, Xiong Z, Zeng Y, Liu S, Li Z, Liu B, Wu K, Xiao J, Yinqi X, Zheng Q, Zhang Y, Yang H, Wang J, Smeds L, Rheindt FE, Braun M, Fjeldsa J, Orlando L, Barker FK, Jønsson KA, Johnson W, Koepfli KP, O'Brien S, Haussler D, Ryder OA, Rahbek C, Willerslev E, Graves GR, Glenn TC, McCormack J, Burt D, Ellegren H, Alström P, Edwards SV, Stamatakis A, Mindell DP, Cracraft J, Braun EL, Warnow T, Jun W, Gilbert MT, Zhang G.

Science. 2014 Dec 12;346(6215):1320-31. doi: 10.1126/science.1253451.

PMID:
25504713
6.

Early mesozoic coexistence of amniotes and hepadnaviridae.

Suh A, Weber CC, Kehlmaier C, Braun EL, Green RE, Fritz U, Ray DA, Ellegren H.

PLoS Genet. 2014 Dec 11;10(12):e1004559. doi: 10.1371/journal.pgen.1004559. eCollection 2014 Dec.

7.

Reconstruction of gross avian genome structure, organization and evolution suggests that the chicken lineage most closely resembles the dinosaur avian ancestor.

Romanov MN, Farré M, Lithgow PE, Fowler KE, Skinner BM, O'Connor R, Fonseka G, Backström N, Matsuda Y, Nishida C, Houde P, Jarvis ED, Ellegren H, Burt DW, Larkin DM, Griffin DK.

BMC Genomics. 2014 Dec 11;15:1060. doi: 10.1186/1471-2164-15-1060.

8.

Evidence for GC-biased gene conversion as a driver of between-lineage differences in avian base composition.

Weber CC, Boussau B, Romiguier J, Jarvis ED, Ellegren H.

Genome Biol. 2014;15(12):549.

9.

Genomic identification and characterization of the pseudoautosomal region in highly differentiated avian sex chromosomes.

Smeds L, Kawakami T, Burri R, Bolivar P, Husby A, Qvarnström A, Uebbing S, Ellegren H.

Nat Commun. 2014 Nov 7;5:5448. doi: 10.1038/ncomms6448.

10.

Patterns of sequencing coverage bias revealed by ultra-deep sequencing of vertebrate mitochondria.

Ekblom R, Smeds L, Ellegren H.

BMC Genomics. 2014 Jun 12;15:467. doi: 10.1186/1471-2164-15-467.

11.

A high-density linkage map enables a second-generation collared flycatcher genome assembly and reveals the patterns of avian recombination rate variation and chromosomal evolution.

Kawakami T, Smeds L, Backström N, Husby A, Qvarnström A, Mugal CF, Olason P, Ellegren H.

Mol Ecol. 2014 Aug;23(16):4035-58. doi: 10.1111/mec.12810. Epub 2014 Jun 17.

12.

Estimation of linkage disequilibrium and interspecific gene flow in Ficedula flycatchers by a newly developed 50k single-nucleotide polymorphism array.

Kawakami T, Backström N, Burri R, Husby A, Olason P, Rice AM, Ålund M, Qvarnström A, Ellegren H.

Mol Ecol Resour. 2014 Nov;14(6):1248-60. doi: 10.1111/1755-0998.12270. Epub 2014 May 26.

13.

Old but not (so) degenerated--slow evolution of largely homomorphic sex chromosomes in ratites.

Yazdi HP, Ellegren H.

Mol Biol Evol. 2014 Jun;31(6):1444-53. doi: 10.1093/molbev/msu101. Epub 2014 Mar 10.

PMID:
24618361
14.

Demographic divergence history of pied flycatcher and collared flycatcher inferred from whole-genome re-sequencing data.

Nadachowska-Brzyska K, Burri R, Olason PI, Kawakami T, Smeds L, Ellegren H.

PLoS Genet. 2013 Nov;9(11):e1003942. doi: 10.1371/journal.pgen.1003942. Epub 2013 Nov 7.

15.

Genome sequencing and population genomics in non-model organisms.

Ellegren H.

Trends Ecol Evol. 2014 Jan;29(1):51-63. doi: 10.1016/j.tree.2013.09.008. Epub 2013 Oct 17. Review.

PMID:
24139972
16.

Transcriptome sequencing reveals the character of incomplete dosage compensation across multiple tissues in flycatchers.

Uebbing S, Künstner A, Mäkinen H, Ellegren H.

Genome Biol Evol. 2013;5(8):1555-66. doi: 10.1093/gbe/evt114.

17.
18.

Twisted signatures of GC-biased gene conversion embedded in an evolutionary stable karyotype.

Mugal CF, Arndt PF, Ellegren H.

Mol Biol Evol. 2013 Jul;30(7):1700-12. doi: 10.1093/molbev/mst067. Epub 2013 Apr 5.

19.
20.

Genome-wide analysis in chicken reveals that local levels of genetic diversity are mainly governed by the rate of recombination.

Mugal CF, Nabholz B, Ellegren H.

BMC Genomics. 2013 Feb 8;14:86. doi: 10.1186/1471-2164-14-86.

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