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Results: 1 to 20 of 129

1.

Unix interfaces, Kleisli, bucandin structure, etc. - The heroic beginning of bioinformatics in Singapore.

Eisenhaber F.

J Bioinform Comput Biol. 2014 Jun;12(3):1471002. doi: 10.1142/S0219720014710024. Epub 2014 Jun 5.

PMID:
24969753
[PubMed - in process]
2.

10 years for the Journal of Bioinformatics and Computational Biology (2003-2013) - A retrospective.

Eisenhaber F, Sherman WA.

J Bioinform Comput Biol. 2014 Jun;12(3):1471001. doi: 10.1142/S0219720014710012. Epub 2014 May 21.

PMID:
24969752
[PubMed - in process]
3.

On the necessity of dissecting sequence similarity scores into segment-specific contributions for inferring protein homology, function prediction and annotation.

Wong WC, Maurer-Stroh S, Eisenhaber B, Eisenhaber F.

BMC Bioinformatics. 2014 Jun 2;15:166. doi: 10.1186/1471-2105-15-166.

PMID:
24890864
[PubMed - in process]
Free PMC Article
4.

Transamidase subunit GAA1/GPAA1 is a M28 family metallo-peptide-synthetase that catalyzes the peptide bond formation between the substrate protein's omega-site and the GPI lipid anchor's phosphoethanolamine.

Eisenhaber B, Eisenhaber S, Kwang TY, Grüber G, Eisenhaber F.

Cell Cycle. 2014 Jun 15;13(12):1912-7. doi: 10.4161/cc.28761. Epub 2014 Apr 17.

PMID:
24743167
[PubMed - in process]
Free Article
5.

International Conference on Genome Informatics (GIW 2013) in Singapore: Introduction to the systems biology contributions.

Eisenhaber F, Sung WK, Wong L.

BMC Syst Biol. 2013;7 Suppl 6:I1. doi: 10.1186/1752-0509-7-S6-I1. Epub 2013 Dec 13. No abstract available.

PMID:
24625351
[PubMed - in process]
Free PMC Article
6.

Automatic phylogenetic classification of bacterial beta-lactamase sequences including structural and antibiotic substrate preference information.

Ma J, Eisenhaber F, Maurer-Stroh S.

J Bioinform Comput Biol. 2013 Dec;11(6):1343011. doi: 10.1142/S0219720013430117. Epub 2013 Dec 11.

PMID:
24372040
[PubMed - in process]
7.

A simple shortcut to unsupervised alignment-free phylogenetic genome groupings, even from unassembled sequencing reads.

Maurer-Stroh S, Gunalan V, Wong WC, Eisenhaber F.

J Bioinform Comput Biol. 2013 Dec;11(6):1343005. doi: 10.1142/S0219720013430051. Epub 2013 Dec 2.

PMID:
24372034
[PubMed - in process]
8.

A new piece in the puzzle of the novel avian-origin influenza A (H7N9) virus.

Lee RT, Gunalan V, Van TD, Le LT, Eisenhaber F, Maurer-Stroh S.

Biol Direct. 2013 Oct 26;8:26. doi: 10.1186/1745-6150-8-26.

PMID:
24160334
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

SPACER: Server for predicting allosteric communication and effects of regulation.

Goncearenco A, Mitternacht S, Yong T, Eisenhaber B, Eisenhaber F, Berezovsky IN.

Nucleic Acids Res. 2013 Jul;41(Web Server issue):W266-72. doi: 10.1093/nar/gkt460. Epub 2013 Jun 3.

PMID:
23737445
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

The highly pathogenic H7N3 avian influenza strain from July 2012 in Mexico acquired an extended cleavage site through recombination with host 28S rRNA.

Maurer-Stroh S, Lee RT, Gunalan V, Eisenhaber F.

Virol J. 2013 May 1;10:139. doi: 10.1186/1743-422X-10-139.

PMID:
23635025
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Low-resolution structure of the soluble domain GPAA1 (yGPAA170-247) of the glycosylphosphatidylinositol transamidase subunit GPAA1 from Saccharomyces cerevisiae.

Saw WG, Eisenhaber B, Eisenhaber F, Grüber G.

Biosci Rep. 2013 Mar 28;33(2):e00033. doi: 10.1042/BSR20120107.

PMID:
23458223
[PubMed - in process]
Free PMC Article
12.

Motif discovery with data mining in 3D protein structure databases: discovery, validation and prediction of the U-shape zinc binding ("Huf-Zinc") motif.

Maurer-Stroh S, Gao H, Han H, Baeten L, Schymkowitz J, Rousseau F, Zhang L, Eisenhaber F.

J Bioinform Comput Biol. 2013 Feb;11(1):1340008. doi: 10.1142/S0219720013400088. Epub 2013 Jan 16.

PMID:
23427990
[PubMed - indexed for MEDLINE]
13.

Beware of moving targets: reference proteome content fluctuates substantially over the years.

Sirota FL, Batagov A, Schneider G, Eisenhaber B, Eisenhaber F, Maurer-Stroh S.

J Bioinform Comput Biol. 2012 Dec;10(6):1250020. doi: 10.1142/S0219720012500205. Epub 2012 Aug 7.

PMID:
22867629
[PubMed - indexed for MEDLINE]
14.

A decade after the first full human genome sequencing: when will we understand our own genome?

Eisenhaber F.

J Bioinform Comput Biol. 2012 Oct;10(5):1271001. doi: 10.1142/S0219720012710011. Epub 2012 Jun 22.

PMID:
22849370
[PubMed - indexed for MEDLINE]
15.

Transmembrane helix: simple or complex.

Wong WC, Maurer-Stroh S, Schneider G, Eisenhaber F.

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W370-5. doi: 10.1093/nar/gks379. Epub 2012 May 7.

PMID:
22564899
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Tachyon search speeds up retrieval of similar sequences by several orders of magnitude.

Tan J, Kuchibhatla D, Sirota FL, Sherman WA, Gattermayer T, Kwoh CY, Eisenhaber F, Schneider G, Maurer-Stroh S.

Bioinformatics. 2012 Jun 15;28(12):1645-6. doi: 10.1093/bioinformatics/bts197. Epub 2012 Apr 23.

PMID:
22531216
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Nuclear import of a lipid-modified transcription factor: mobilization of NFAT5 isoform a by osmotic stress.

Eisenhaber B, Sammer M, Lua WH, Benetka W, Liew LL, Yu W, Lee HK, Koranda M, Eisenhaber F, Adhikari S.

Cell Cycle. 2011 Nov 15;10(22):3897-911. doi: 10.4161/cc.10.22.18043. Epub 2011 Nov 15.

PMID:
22071693
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Structural requirements for interaction of peroxisomal targeting signal 2 and its receptor PEX7.

Kunze M, Neuberger G, Maurer-Stroh S, Ma J, Eck T, Braverman N, Schmid JA, Eisenhaber F, Berger J.

J Biol Chem. 2011 Dec 30;286(52):45048-62. doi: 10.1074/jbc.M111.301853. Epub 2011 Nov 5.

PMID:
22057399
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Not all transmembrane helices are born equal: Towards the extension of the sequence homology concept to membrane proteins.

Wong WC, Maurer-Stroh S, Eisenhaber F.

Biol Direct. 2011 Oct 25;6:57. doi: 10.1186/1745-6150-6-57.

PMID:
22024092
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Purification and crystallization of yeast glycosylphosphatidylinositol transamidase subunit PIG-S (PIG-S(71-467)).

Kamariah N, Eisenhaber F, Adhikari S, Eisenhaber B, Grüber G.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011 Aug 1;67(Pt 8):896-9. doi: 10.1107/S1744309111024080. Epub 2011 Jul 19.

PMID:
21821889
[PubMed - indexed for MEDLINE]
Free PMC Article

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