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Items: 1 to 20 of 144

1.

The Recipe for Protein Sequence-Based Function Prediction and Its Implementation in the ANNOTATOR Software Environment.

Eisenhaber B, Kuchibhatla D, Sherman W, Sirota FL, Berezovsky IN, Wong WC, Eisenhaber F.

Methods Mol Biol. 2016;1415:477-506. doi: 10.1007/978-1-4939-3572-7_25.

PMID:
27115649
2.

Low resolution solution structure of an enzymatic active AhpC10:AhpF2 ensemble of the Escherichia coli Alkyl hydroperoxide Reductase.

Kamariah N, Nartey W, Eisenhaber B, Eisenhaber F, Grüber G.

J Struct Biol. 2016 Jan;193(1):13-22. doi: 10.1016/j.jsb.2015.11.004. Epub 2015 Nov 14.

PMID:
26584540
3.

HPMV: human protein mutation viewer - relating sequence mutations to protein sequence architecture and function changes.

Sherman WA, Kuchibhatla DB, Limviphuvadh V, Maurer-Stroh S, Eisenhaber B, Eisenhaber F.

J Bioinform Comput Biol. 2015 Oct;13(5):1550028. doi: 10.1142/S0219720015500286. Epub 2015 Oct 27.

PMID:
26503432
4.

NMR studies reveal a novel grab and release mechanism for efficient catalysis of the bacterial 2-Cys peroxiredoxin machinery.

Nartey W, Basak S, Kamariah N, Manimekalai MS, Robson S, Wagner G, Eisenhaber B, Eisenhaber F, Grüber G.

FEBS J. 2015 Dec;282(23):4620-38. doi: 10.1111/febs.13522. Epub 2015 Oct 16.

PMID:
26402142
5.

dissectHMMER: a HMMER-based score dissection framework that statistically evaluates fold-critical sequence segments for domain fold similarity.

Wong WC, Yap CK, Eisenhaber B, Eisenhaber F.

Biol Direct. 2015 Aug 1;10:39. doi: 10.1186/s13062-015-0068-3.

6.

Crystallographic and solution studies of NAD(+)- and NADH-bound alkylhydroperoxide reductase subunit F (AhpF) from Escherichia coli provide insight into sequential enzymatic steps.

Kamariah N, Manimekalai MS, Nartey W, Eisenhaber F, Eisenhaber B, Grüber G.

Biochim Biophys Acta. 2015 Oct;1847(10):1139-52. doi: 10.1016/j.bbabio.2015.06.011. Epub 2015 Jun 17.

PMID:
26092085
7.

Single-residue posttranslational modification sites at the N-terminus, C-terminus or in-between: To be or not to be exposed for enzyme access.

Sirota FL, Maurer-Stroh S, Eisenhaber B, Eisenhaber F.

Proteomics. 2015 Jul;15(14):2525-46. doi: 10.1002/pmic.201400633.

8.

Novel SNP improves differential survivability and mortality in non-small cell lung cancer patients.

Mah TL, Yap XN, Limviphuvadh V, Li N, Sridharan S, Kuralmani V, Feng M, Liem N, Adhikari S, Yong WP, Soo RA, Maurer-Stroh S, Eisenhaber F, Tong JC.

BMC Genomics. 2014;15 Suppl 9:S20. doi: 10.1186/1471-2164-15-S9-S20. Epub 2014 Dec 8.

9.

Structure, mechanism and ensemble formation of the alkylhydroperoxide reductase subunits AhpC and AhpF from Escherichia coli.

Dip PV, Kamariah N, Subramanian Manimekalai MS, Nartey W, Balakrishna AM, Eisenhaber F, Eisenhaber B, Grüber G.

Acta Crystallogr D Biol Crystallogr. 2014 Nov;70(Pt 11):2848-62. doi: 10.1107/S1399004714019233. Epub 2014 Oct 16.

PMID:
25372677
10.

Key roles of the Escherichia coli AhpC C-terminus in assembly and catalysis of alkylhydroperoxide reductase, an enzyme essential for the alleviation of oxidative stress.

Dip PV, Kamariah N, Nartey W, Beushausen C, Kostyuchenko VA, Ng TS, Lok SM, Saw WG, Eisenhaber F, Eisenhaber B, Grüber G.

Biochim Biophys Acta. 2014 Dec;1837(12):1932-43.

11.

Potential human adaptation mutation of influenza A(H5N1) virus, Canada.

Maurer-Stroh S, Li Y, Bastien N, Gunalan V, Lee RT, Eisenhaber F, Booth TF.

Emerg Infect Dis. 2014 Sep;20(9):1580-2. doi: 10.3201/eid2009.140240. No abstract available.

12.

Unix interfaces, Kleisli, bucandin structure, etc. -- the heroic beginning of bioinformatics in Singapore.

Eisenhaber F.

J Bioinform Comput Biol. 2014 Jun;12(3):1471002. doi: 10.1142/S0219720014710024. Epub 2014 Jun 5.

PMID:
24969753
13.

10 years for the Journal of Bioinformatics and Computational Biology (2003-2013) -- a retrospective.

Eisenhaber F, Sherman WA.

J Bioinform Comput Biol. 2014 Jun;12(3):1471001. doi: 10.1142/S0219720014710012. Epub 2014 May 21.

PMID:
24969752
14.

On the necessity of dissecting sequence similarity scores into segment-specific contributions for inferring protein homology, function prediction and annotation.

Wong WC, Maurer-Stroh S, Eisenhaber B, Eisenhaber F.

BMC Bioinformatics. 2014 Jun 2;15:166. doi: 10.1186/1471-2105-15-166.

15.
16.

International Conference on Genome Informatics (GIW 2013) in Singapore: Introduction to the systems biology contributions.

Eisenhaber F, Sung WK, Wong L.

BMC Syst Biol. 2013;7 Suppl 6:I1. doi: 10.1186/1752-0509-7-S6-I1. Epub 2013 Dec 13. No abstract available.

17.

Automatic phylogenetic classification of bacterial beta-lactamase sequences including structural and antibiotic substrate preference information.

Ma J, Eisenhaber F, Maurer-Stroh S.

J Bioinform Comput Biol. 2013 Dec;11(6):1343011. doi: 10.1142/S0219720013430117. Epub 2013 Dec 11.

PMID:
24372040
18.

A simple shortcut to unsupervised alignment-free phylogenetic genome groupings, even from unassembled sequencing reads.

Maurer-Stroh S, Gunalan V, Wong WC, Eisenhaber F.

J Bioinform Comput Biol. 2013 Dec;11(6):1343005. doi: 10.1142/S0219720013430051. Epub 2013 Dec 2.

PMID:
24372034
19.

Guest Editorial for the International Conference on Genome Informatics (GIW 2013).

Eisenhaber F, Sung WK, Wong L.

IEEE/ACM Trans Comput Biol Bioinform. 2014 Jan-Feb;11(1):5-6. No abstract available.

PMID:
26605388
20.

A Perspective on Rational Designs of a Hemagglutinin Based Universal Influenza Vaccine.

Van TD, Tran N, Le L, Eisenhaber F.

Curr Pharm Des. 2016 Apr 19. [Epub ahead of print]

PMID:
24308491
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