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Results: 20

1.

The MULTICOM protein tertiary structure prediction system.

Li J, Bhattacharya D, Cao R, Adhikari B, Deng X, Eickholt J, Cheng J.

Methods Mol Biol. 2014;1137:29-41. doi: 10.1007/978-1-4939-0366-5_3.

PMID:
24573472
[PubMed - indexed for MEDLINE]
2.

A study and benchmark of DNcon: a method for protein residue-residue contact prediction using deep networks.

Eickholt J, Cheng J.

BMC Bioinformatics. 2013;14 Suppl 14:S12. doi: 10.1186/1471-2105-14-S14-S12. Epub 2013 Oct 9.

PMID:
24267585
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

DNdisorder: predicting protein disorder using boosting and deep networks.

Eickholt J, Cheng J.

BMC Bioinformatics. 2013 Mar 6;14:88. doi: 10.1186/1471-2105-14-88.

PMID:
23497251
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Designing and benchmarking the MULTICOM protein structure prediction system.

Li J, Deng X, Eickholt J, Cheng J.

BMC Struct Biol. 2013 Feb 27;13:2. doi: 10.1186/1472-6807-13-2.

PMID:
23442819
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Predicting protein residue-residue contacts using deep networks and boosting.

Eickholt J, Cheng J.

Bioinformatics. 2012 Dec 1;28(23):3066-72. doi: 10.1093/bioinformatics/bts598. Epub 2012 Oct 9.

PMID:
23047561
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Recursive protein modeling: a divide and conquer strategy for Protein Structure Prediction and its case study in CASP9.

Cheng J, Eickholt J, Wang Z, Deng X.

J Bioinform Comput Biol. 2012 Jun;10(3):1242003. doi: 10.1142/S0219720012420036.

PMID:
22809379
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

The MULTICOM toolbox for protein structure prediction.

Cheng J, Li J, Wang Z, Eickholt J, Deng X.

BMC Bioinformatics. 2012 Apr 30;13:65. doi: 10.1186/1471-2105-13-65.

PMID:
22545707
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

A conformation ensemble approach to protein residue-residue contact.

Eickholt J, Wang Z, Cheng J.

BMC Struct Biol. 2011 Oct 12;11:38. doi: 10.1186/1472-6807-11-38.

PMID:
21989082
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

A comprehensive overview of computational protein disorder prediction methods.

Deng X, Eickholt J, Cheng J.

Mol Biosyst. 2012 Jan;8(1):114-21. doi: 10.1039/c1mb05207a. Epub 2011 Aug 26. Review.

PMID:
21874190
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

APOLLO: a quality assessment service for single and multiple protein models.

Wang Z, Eickholt J, Cheng J.

Bioinformatics. 2011 Jun 15;27(12):1715-6. doi: 10.1093/bioinformatics/btr268. Epub 2011 May 5.

PMID:
21546397
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

DoBo: Protein domain boundary prediction by integrating evolutionary signals and machine learning.

Eickholt J, Deng X, Cheng J.

BMC Bioinformatics. 2011 Feb 1;12:43. doi: 10.1186/1471-2105-12-43.

PMID:
21284866
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

MULTICOM: a multi-level combination approach to protein structure prediction and its assessments in CASP8.

Wang Z, Eickholt J, Cheng J.

Bioinformatics. 2010 Apr 1;26(7):882-8. doi: 10.1093/bioinformatics/btq058. Epub 2010 Feb 11.

PMID:
20150411
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

PreDisorder: ab initio sequence-based prediction of protein disordered regions.

Deng X, Eickholt J, Cheng J.

BMC Bioinformatics. 2009 Dec 21;10:436. doi: 10.1186/1471-2105-10-436.

PMID:
20025768
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Prediction of global and local quality of CASP8 models by MULTICOM series.

Cheng J, Wang Z, Tegge AN, Eickholt J.

Proteins. 2009;77 Suppl 9:181-4. doi: 10.1002/prot.22487.

PMID:
19544564
[PubMed - indexed for MEDLINE]
15.

NNcon: improved protein contact map prediction using 2D-recursive neural networks.

Tegge AN, Wang Z, Eickholt J, Cheng J.

Nucleic Acids Res. 2009 Jul;37(Web Server issue):W515-8. doi: 10.1093/nar/gkp305. Epub 2009 May 6.

PMID:
19420062
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Disease outcome in patients with low stage renal cell carcinoma treated with nephron sparing or radical surgery. 1996.

Lerner SE, Hawkins CA, Blute ML, Grabner A, Wollan PC, Eickholt JT, Zincke H.

J Urol. 2002 Feb;167(2 Pt 2):884-9; discussion 889-90. No abstract available.

PMID:
11905916
[PubMed - indexed for MEDLINE]
17.

Anatomy of the normal left atrial appendage: a quantitative study of age-related changes in 500 autopsy hearts: implications for echocardiographic examination.

Veinot JP, Harrity PJ, Gentile F, Khandheria BK, Bailey KR, Eickholt JT, Seward JB, Tajik AJ, Edwards WD.

Circulation. 1997 Nov 4;96(9):3112-5.

PMID:
9386182
[PubMed - indexed for MEDLINE]
Free Article
18.

Analysis of risk factors for progression in patients with pathologically confined prostate cancers after radical retropubic prostatectomy.

Lerner SE, Blute ML, Bergstralh EJ, Bostwick DG, Eickholt JT, Zincke H.

J Urol. 1996 Jul;156(1):137-43.

PMID:
8648775
[PubMed - indexed for MEDLINE]
19.

Disease outcome in patients with low stage renal cell carcinoma treated with nephron sparing or radical surgery.

Lerner SE, Hawkins CA, Blute ML, Grabner A, Wollan PC, Eickholt JT, Zincke H.

J Urol. 1996 Jun;155(6):1868-73.

PMID:
8618276
[PubMed - indexed for MEDLINE]
20.

Results of long-term treatment with orthophosphate and pyridoxine in patients with primary hyperoxaluria.

Milliner DS, Eickholt JT, Bergstralh EJ, Wilson DM, Smith LH.

N Engl J Med. 1994 Dec 8;331(23):1553-8.

PMID:
7969325
[PubMed - indexed for MEDLINE]
Free Article
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