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Items: 15

1.

Bioinformatics/biostatistics: microarray analysis.

Eichler GS.

Methods Mol Biol. 2012;823:347-58. doi: 10.1007/978-1-60327-216-2_22.

PMID:
22081356
2.

Metabolomics reveals attenuation of the SLC6A20 kidney transporter in nonhuman primate and mouse models of type 2 diabetes mellitus.

Patterson AD, Bonzo JA, Li F, Krausz KW, Eichler GS, Aslam S, Tigno X, Weinstein JN, Hansen BC, Idle JR, Gonzalez FJ.

J Biol Chem. 2011 Jun 3;286(22):19511-22. doi: 10.1074/jbc.M111.221739. Epub 2011 Apr 12.

3.

Inhibition of histone deacetylase in cancer cells slows down replication forks, activates dormant origins, and induces DNA damage.

Conti C, Leo E, Eichler GS, Sordet O, Martin MM, Fan A, Aladjem MI, Pommier Y.

Cancer Res. 2010 Jun 1;70(11):4470-80. doi: 10.1158/0008-5472.CAN-09-3028. Epub 2010 May 11.

4.

UPLC-ESI-TOFMS-based metabolomics and gene expression dynamics inspector self-organizing metabolomic maps as tools for understanding the cellular response to ionizing radiation.

Patterson AD, Li H, Eichler GS, Krausz KW, Weinstein JN, Fornace AJ Jr, Gonzalez FJ, Idle JR.

Anal Chem. 2008 Feb 1;80(3):665-74. doi: 10.1021/ac701807v. Epub 2008 Jan 4.

5.
6.

Signal pathway profiling of epithelial and stromal compartments of colonic carcinoma reveals epithelial-mesenchymal transition.

Sheehan KM, Gulmann C, Eichler GS, Weinstein JN, Barrett HL, Kay EW, Conroy RM, Liotta LA, Petricoin EF 3rd.

Oncogene. 2008 Jan 10;27(3):323-31. Epub 2007 Jul 9.

PMID:
17621268
7.

Towards a holistic, yet gene-centered analysis of gene expression profiles: a case study of human lung cancers.

Guo Y, Eichler GS, Feng Y, Ingber DE, Huang S.

J Biomed Biotechnol. 2006;2006(5):69141.

8.

Phosphoprotein pathway mapping: Akt/mammalian target of rapamycin activation is negatively associated with childhood rhabdomyosarcoma survival.

Petricoin EF 3rd, Espina V, Araujo RP, Midura B, Yeung C, Wan X, Eichler GS, Johann DJ Jr, Qualman S, Tsokos M, Krishnan K, Helman LJ, Liotta LA.

Cancer Res. 2007 Apr 1;67(7):3431-40.

9.

Asparagine synthetase as a causal, predictive biomarker for L-asparaginase activity in ovarian cancer cells.

Lorenzi PL, Reinhold WC, Rudelius M, Gunsior M, Shankavaram U, Bussey KJ, Scherf U, Eichler GS, Martin SE, Chin K, Gray JW, Kohn EC, Horak ID, Von Hoff DD, Raffeld M, Goldsmith PK, Caplen NJ, Weinstein JN.

Mol Cancer Ther. 2006 Nov;5(11):2613-23. Epub 2006 Nov 6.

10.

Analysis of fracture healing by large-scale transcriptional profile identified temporal relationships between metalloproteinase and ADAMTS mRNA expression.

Wang K, Vishwanath P, Eichler GS, Al-Sebaei MO, Edgar CM, Einhorn TA, Smith TF, Gerstenfeld LC.

Matrix Biol. 2006 Jul;25(5):271-81. Epub 2006 Mar 6.

PMID:
16584876
11.

Comparison of methods for sequential screening of large compound sets.

Blower PE, Cross KP, Eichler GS, Myatt GJ, Weinstein JN, Yang C.

Comb Chem High Throughput Screen. 2006 Feb;9(2):115-22.

PMID:
16475969
12.

Evidence by molecular profiling for a placental origin of infantile hemangioma.

Barnés CM, Huang S, Kaipainen A, Sanoudou D, Chen EJ, Eichler GS, Guo Y, Yu Y, Ingber DE, Mulliken JB, Beggs AH, Folkman J, Fishman SJ.

Proc Natl Acad Sci U S A. 2005 Dec 27;102(52):19097-102. Epub 2005 Dec 19.

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14.

Gene Expression Dynamics Inspector (GEDI): for integrative analysis of expression profiles.

Eichler GS, Huang S, Ingber DE.

Bioinformatics. 2003 Nov 22;19(17):2321-2.

15.

Caldesmon-dependent switching between capillary endothelial cell growth and apoptosis through modulation of cell shape and contractility.

Numaguchi Y, Huang S, Polte TR, Eichler GS, Wang N, Ingber DE.

Angiogenesis. 2003;6(1):55-64.

PMID:
14517405
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