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Results: 1 to 20 of 27

1.

PhenoNet: identification of key networks associated with disease phenotype.

Ben-Hamo R, Gidoni M, Efroni S.

Bioinformatics. 2014 Sep 1;30(17):2399-405. doi: 10.1093/bioinformatics/btu199. Epub 2014 May 7.

PMID:
24812342
[PubMed - in process]
2.

Systems analysis utilising pathway interactions identifies sonic hedgehog pathway as a primary biomarker and oncogenic target in hepatocellular carcinoma.

Efroni S, Meerzaman D, Schaefer CF, Greenblum S, Soo-Lyu M, Hu Y, Cultraro C, Meshorer E, Buetow KH.

IET Syst Biol. 2013 Dec;7(6):243-51.

PMID:
24712101
[PubMed - indexed for MEDLINE]
3.

SENP5 mediates breast cancer invasion via a TGFβRI SUMOylation cascade.

Cashman R, Cohen H, Ben-Hamo R, Zilberberg A, Efroni S.

Oncotarget. 2014 Feb 28;5(4):1071-82.

PMID:
24658161
[PubMed - in process]
Free PMC Article
4.

MicroRNA-gene association as a prognostic biomarker in cancer exposes disease mechanisms.

Ben-Hamo R, Efroni S.

PLoS Comput Biol. 2013;9(11):e1003351. doi: 10.1371/journal.pcbi.1003351. Epub 2013 Nov 21.

PMID:
24278004
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Spatial regulation dominates gene function in the ganglia chain.

Hibsh D, Schori H, Efroni S, Shefi O.

Bioinformatics. 2014 Feb 1;30(3):310-6. doi: 10.1093/bioinformatics/btt570. Epub 2013 Oct 1.

PMID:
24085568
[PubMed - indexed for MEDLINE]
6.

IL-27 acts on DCs to suppress the T cell response and autoimmunity by inducing expression of the immunoregulatory molecule CD39.

Mascanfroni ID, Yeste A, Vieira SM, Burns EJ, Patel B, Sloma I, Wu Y, Mayo L, Ben-Hamo R, Efroni S, Kuchroo VK, Robson SC, Quintana FJ.

Nat Immunol. 2013 Oct;14(10):1054-63. doi: 10.1038/ni.2695. Epub 2013 Sep 1.

PMID:
23995234
[PubMed - indexed for MEDLINE]
7.

Altered immune pathway activity under exercise challenge in Gulf War Illness: an exploratory analysis.

Broderick G, Ben-Hamo R, Vashishtha S, Efroni S, Nathanson L, Barnes Z, Fletcher MA, Klimas N.

Brain Behav Immun. 2013 Feb;28:159-69. doi: 10.1016/j.bbi.2012.11.007. Epub 2012 Nov 29.

PMID:
23201588
[PubMed - indexed for MEDLINE]
8.
9.

RBM38 is a direct transcriptional target of E2F1 that limits E2F1-induced proliferation.

Feldstein O, Ben-Hamo R, Bashari D, Efroni S, Ginsberg D.

Mol Cancer Res. 2012 Sep;10(9):1169-77. Epub 2012 Jul 13.

PMID:
22798430
[PubMed - in process]
Free Article
10.

Biomarker robustness reveals the PDGF network as driving disease outcome in ovarian cancer patients in multiple studies.

Ben-Hamo R, Efroni S.

BMC Syst Biol. 2012 Jan 11;6:3. doi: 10.1186/1752-0509-6-3.

PMID:
22236809
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Rep-Seq: uncovering the immunological repertoire through next-generation sequencing.

Benichou J, Ben-Hamo R, Louzoun Y, Efroni S.

Immunology. 2012 Mar;135(3):183-91. doi: 10.1111/j.1365-2567.2011.03527.x. Review.

PMID:
22043864
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

The PathOlogist: an automated tool for pathway-centric analysis.

Greenblum SI, Efroni S, Schaefer CF, Buetow KH.

BMC Bioinformatics. 2011 May 4;12:133. doi: 10.1186/1471-2105-12-133.

PMID:
21542931
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

The whole-organism heavy chain B cell repertoire from Zebrafish self-organizes into distinct network features.

Ben-Hamo R, Efroni S.

BMC Syst Biol. 2011 Feb 10;5:27. doi: 10.1186/1752-0509-5-27.

PMID:
21310065
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Immune-induced evolutionary selection focused on a single reading frame in overlapping hepatitis B virus proteins.

Maman Y, Blancher A, Benichou J, Yablonka A, Efroni S, Louzoun Y.

J Virol. 2011 May;85(9):4558-66. doi: 10.1128/JVI.02142-10. Epub 2011 Feb 9.

PMID:
21307195
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Detecting cancer gene networks characterized by recurrent genomic alterations in a population.

Efroni S, Ben-Hamo R, Edmonson M, Greenblum S, Schaefer CF, Buetow KH.

PLoS One. 2011 Jan 4;6(1):e14437. doi: 10.1371/journal.pone.0014437.

PMID:
21283511
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Reactive animation: from piecemeal experimentation to reactive biological systems.

Vainas O, Harel D, Cohen IR, Efroni S.

Autoimmunity. 2011 Jun;44(4):271-81. doi: 10.3109/08916934.2010.523260. Epub 2011 Jan 19. Review.

PMID:
21244340
[PubMed - indexed for MEDLINE]
18.

Genetic variations at loci involved in the immune response are risk factors for hepatocellular carcinoma.

Clifford RJ, Zhang J, Meerzaman DM, Lyu MS, Hu Y, Cultraro CM, Finney RP, Kelley JM, Efroni S, Greenblum SI, Nguyen CV, Rowe WL, Sharma S, Wu G, Yan C, Zhang H, Chung YH, Kim JA, Park NH, Song IH, Buetow KH.

Hepatology. 2010 Dec;52(6):2034-43. doi: 10.1002/hep.23943.

PMID:
21105107
[PubMed - indexed for MEDLINE]
19.

Stem cells do play with dice: a statistical physics view of transcription.

Efroni S, Melcer S, Nissim-Rafinia M, Meshorer E.

Cell Cycle. 2009 Jan 1;8(1):43-8. Epub 2009 Jan 16. Review.

PMID:
19106602
[PubMed - indexed for MEDLINE]
Free Article
20.

Superposition of transcriptional behaviors determines gene state.

Efroni S, Carmel L, Schaefer CG, Buetow KH.

PLoS One. 2008 Aug 6;3(8):e2901. doi: 10.1371/journal.pone.0002901.

PMID:
18682855
[PubMed - indexed for MEDLINE]
Free PMC Article

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