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Results: 1 to 20 of 189

1.

The Arabidopsis 14-3-3 Protein RARE COLD INDUCIBLE 1A Links Low-Temperature Response and Ethylene Biosynthesis to Regulate Freezing Tolerance and Cold Acclimation.

Catalá R, López-Cobollo R, Mar Castellano M, Angosto T, Alonso JM, Ecker JR, Salinas J.

Plant Cell. 2014 Aug 8. pii: tpc.114.127605. [Epub ahead of print]

PMID:
25122152
[PubMed - as supplied by publisher]
2.

A genome-scale resource for the functional characterization of Arabidopsis transcription factors.

Pruneda-Paz JL, Breton G, Nagel DH, Kang SE, Bonaldi K, Doherty CJ, Ravelo S, Galli M, Ecker JR, Kay SA.

Cell Rep. 2014 Jul 24;8(2):622-32. doi: 10.1016/j.celrep.2014.06.033. Epub 2014 Jul 17.

PMID:
25043187
[PubMed - in process]
3.

Abnormalities in human pluripotent cells due to reprogramming mechanisms.

Ma H, Morey R, O'Neil RC, He Y, Daughtry B, Schultz MD, Hariharan M, Nery JR, Castanon R, Sabatini K, Thiagarajan RD, Tachibana M, Kang E, Tippner-Hedges R, Ahmed R, Gutierrez NM, Van Dyken C, Polat A, Sugawara A, Sparman M, Gokhale S, Amato P, Wolf DP, Ecker JR, Laurent LC, Mitalipov S.

Nature. 2014 Jul 10;511(7508):177-83. doi: 10.1038/nature13551. Epub 2014 Jul 2.

PMID:
25008523
[PubMed - in process]
4.

DNA topoisomerase 1α promotes transcriptional silencing of transposable elements through DNA methylation and histone lysine 9 dimethylation in Arabidopsis.

Dinh TT, Gao L, Liu X, Li D, Li S, Zhao Y, O'Leary M, Le B, Schmitz RJ, Manavella P, Li S, Weigel D, Pontes O, Ecker JR, Chen X.

PLoS Genet. 2014 Jul 3;10(7):e1004446. doi: 10.1371/journal.pgen.1004446. eCollection 2014 Jul.

PMID:
24992598
[PubMed - in process]
Free PMC Article
5.

CG hypomethylation in Lsh-/- mouse embryonic fibroblasts is associated with de novo H3K4me1 formation and altered cellular plasticity.

Yu W, Briones V, Lister R, McIntosh C, Han Y, Lee EY, Ren J, Terashima M, Leighty RM, Ecker JR, Muegge K.

Proc Natl Acad Sci U S A. 2014 Apr 22;111(16):5890-5. doi: 10.1073/pnas.1320945111. Epub 2014 Apr 7.

PMID:
24711395
[PubMed - indexed for MEDLINE]
6.

Systematic mapping of occluded genes by cell fusion reveals prevalence and stability of cis-mediated silencing in somatic cells.

Looney TJ, Zhang L, Chen CH, Lee JH, Chari S, Mao FF, Pelizzola M, Zhang L, Lister R, Baker SW, Fernandes CJ, Gaetz J, Foshay KM, Clift KL, Zhang Z, Li WQ, Vallender EJ, Wagner U, Qin JY, Michelini KJ, Bugarija B, Park D, Aryee E, Stricker T, Zhou J, White KP, Ren B, Schroth GP, Ecker JR, Xiang AP, Lahn BT.

Genome Res. 2014 Feb;24(2):267-80. doi: 10.1101/gr.143891.112. Epub 2013 Dec 5.

PMID:
24310002
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Epigenomic programming contributes to the genomic drift evolution of the F-Box protein superfamily in Arabidopsis.

Hua Z, Pool JE, Schmitz RJ, Schultz MD, Shiu SH, Ecker JR, Vierstra RD.

Proc Natl Acad Sci U S A. 2013 Oct 15;110(42):16927-32. doi: 10.1073/pnas.1316009110. Epub 2013 Sep 30.

PMID:
24082131
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

STAR: an integrated solution to management and visualization of sequencing data.

Wang T, Liu J, Shen L, Tonti-Filippini J, Zhu Y, Jia H, Lister R, Whitaker JW, Ecker JR, Millar AH, Ren B, Wang W.

Bioinformatics. 2013 Dec 15;29(24):3204-10. doi: 10.1093/bioinformatics/btt558. Epub 2013 Sep 27.

PMID:
24078702
[PubMed - indexed for MEDLINE]
9.

Arabidopsis basic helix-loop-helix transcription factors MYC2, MYC3, and MYC4 regulate glucosinolate biosynthesis, insect performance, and feeding behavior.

Schweizer F, Fernández-Calvo P, Zander M, Diez-Diaz M, Fonseca S, Glauser G, Lewsey MG, Ecker JR, Solano R, Reymond P.

Plant Cell. 2013 Aug;25(8):3117-32. doi: 10.1105/tpc.113.115139. Epub 2013 Aug 13.

PMID:
23943862
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Global epigenomic reconfiguration during mammalian brain development.

Lister R, Mukamel EA, Nery JR, Urich M, Puddifoot CA, Johnson ND, Lucero J, Huang Y, Dwork AJ, Schultz MD, Yu M, Tonti-Filippini J, Heyn H, Hu S, Wu JC, Rao A, Esteller M, He C, Haghighi FG, Sejnowski TJ, Behrens MM, Ecker JR.

Science. 2013 Aug 9;341(6146):1237905. doi: 10.1126/science.1237905. Epub 2013 Jul 4.

PMID:
23828890
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Temporal transcriptional response to ethylene gas drives growth hormone cross-regulation in Arabidopsis.

Chang KN, Zhong S, Weirauch MT, Hon G, Pelizzola M, Li H, Huang SS, Schmitz RJ, Urich MA, Kuo D, Nery JR, Qiao H, Yang A, Jamali A, Chen H, Ideker T, Ren B, Bar-Joseph Z, Hughes TR, Ecker JR.

Elife. 2013 Jun 11;2:e00675. doi: 10.7554/eLife.00675.

PMID:
23795294
[PubMed]
Free PMC Article
12.

Epigenome-wide inheritance of cytosine methylation variants in a recombinant inbred population.

Schmitz RJ, He Y, Valdés-López O, Khan SM, Joshi T, Urich MA, Nery JR, Diers B, Xu D, Stacey G, Ecker JR.

Genome Res. 2013 Oct;23(10):1663-74. doi: 10.1101/gr.152538.112. Epub 2013 Jun 5.

PMID:
23739894
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Response to perspective: "separation anxiety: an analysis of ethylene-induced cleavage of EIN2".

Qiao H, Shen Z, Huang SS, Schmitz RJ, Urich MA, Briggs SP, Ecker JR.

Plant Signal Behav. 2013 Aug;8(8). pii: e25037. doi: 10.4161/psb.25037. Epub 2013 May 31.

PMID:
23733051
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Epigenomic analysis of multilineage differentiation of human embryonic stem cells.

Xie W, Schultz MD, Lister R, Hou Z, Rajagopal N, Ray P, Whitaker JW, Tian S, Hawkins RD, Leung D, Yang H, Wang T, Lee AY, Swanson SA, Zhang J, Zhu Y, Kim A, Nery JR, Urich MA, Kuan S, Yen CA, Klugman S, Yu P, Suknuntha K, Propson NE, Chen H, Edsall LE, Wagner U, Li Y, Ye Z, Kulkarni A, Xuan Z, Chung WY, Chi NC, Antosiewicz-Bourget JE, Slukvin I, Stewart R, Zhang MQ, Wang W, Thomson JA, Ecker JR, Ren B.

Cell. 2013 May 23;153(5):1134-48. doi: 10.1016/j.cell.2013.04.022. Epub 2013 May 9.

PMID:
23664764
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Functional characterization of type-B response regulators in the Arabidopsis cytokinin response.

Hill K, Mathews DE, Kim HJ, Street IH, Wildes SL, Chiang YH, Mason MG, Alonso JM, Ecker JR, Kieber JJ, Schaller GE.

Plant Physiol. 2013 May;162(1):212-24. doi: 10.1104/pp.112.208736. Epub 2013 Mar 12.

PMID:
23482873
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Patterns of population epigenomic diversity.

Schmitz RJ, Schultz MD, Urich MA, Nery JR, Pelizzola M, Libiger O, Alix A, McCosh RB, Chen H, Schork NJ, Ecker JR.

Nature. 2013 Mar 14;495(7440):193-8. doi: 10.1038/nature11968. Epub 2013 Mar 6.

PMID:
23467092
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Epigenetic trigger for tomato ripening.

Ecker JR.

Nat Biotechnol. 2013 Feb;31(2):119-20. doi: 10.1038/nbt.2497. No abstract available.

PMID:
23392509
[PubMed - indexed for MEDLINE]
18.

Epiallelic variation in Arabidopsis thaliana.

O'Malley RC, Ecker JR.

Cold Spring Harb Symp Quant Biol. 2012;77:135-45. doi: 10.1101/sqb.2012.77.014571. Epub 2012 Dec 5. Review.

PMID:
23223383
[PubMed - indexed for MEDLINE]
19.

Circadian oscillations of protein-coding and regulatory RNAs in a highly dynamic mammalian liver epigenome.

Vollmers C, Schmitz RJ, Nathanson J, Yeo G, Ecker JR, Panda S.

Cell Metab. 2012 Dec 5;16(6):833-45. doi: 10.1016/j.cmet.2012.11.004.

PMID:
23217262
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

A blueprint for an international cancer epigenome consortium. A report from the AACR Cancer Epigenome Task Force.

Beck S, Bernstein BE, Campbell RM, Costello JF, Dhanak D, Ecker JR, Greally JM, Issa JP, Laird PW, Polyak K, Tycko B, Jones PA; AACR Cancer Epigenome Task Force.

Cancer Res. 2012 Dec 15;72(24):6319-24. doi: 10.1158/0008-5472.CAN-12-3658. Epub 2012 Nov 27. No abstract available.

PMID:
23188507
[PubMed - indexed for MEDLINE]
Free Article

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