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Acinetobacter baumannii Virulence Is Mediated by the Concerted Action of Three Phospholipases D.

Stahl J, Bergmann H, Göttig S, Ebersberger I, Averhoff B.

PLoS One. 2015 Sep 17;10(9):e0138360. doi: 10.1371/journal.pone.0138360. eCollection 2015.


Potential and pitfalls of eukaryotic metagenome skimming: a test case for lichens.

Greshake B, Zehr S, Dal Grande F, Meiser A, Schmitt I, Ebersberger I.

Mol Ecol Resour. 2015 Sep 8. doi: 10.1111/1755-0998.12463. [Epub ahead of print]


Positive selection in development and growth rate regulation genes involved in species divergence of the genus Radix.

Feldmeyer B, Greshake B, Funke E, Ebersberger I, Pfenninger M.

BMC Evol Biol. 2015 Aug 19;15:164. doi: 10.1186/s12862-015-0434-x.


The association of late-acting snoRNPs with human pre-ribosomal complexes requires the RNA helicase DDX21.

Sloan KE, Leisegang MS, Doebele C, Ramírez AS, Simm S, Safferthal C, Kretschmer J, Schorge T, Markoutsa S, Haag S, Karas M, Ebersberger I, Schleiff E, Watkins NJ, Bohnsack MT.

Nucleic Acids Res. 2015 Jan;43(1):553-64. doi: 10.1093/nar/gku1291. Epub 2014 Dec 4.


Higher plant proteins of cyanobacterial origin: are they or are they not preferentially targeted to chloroplasts?

Bayer RG, Köstler T, Jain A, Stael S, Ebersberger I, Teige M.

Mol Plant. 2014 Dec;7(12):1797-800. doi: 10.1093/mp/ssu095. Epub 2014 Sep 1. No abstract available.


A transcriptome approach to ecdysozoan phylogeny.

Borner J, Rehm P, Schill RO, Ebersberger I, Burmester T.

Mol Phylogenet Evol. 2014 Nov;80:79-87. doi: 10.1016/j.ympev.2014.08.001. Epub 2014 Aug 12.


Transcriptome data reveal Syndermatan relationships and suggest the evolution of endoparasitism in Acanthocephala via an epizoic stage.

Wey-Fabrizius AR, Herlyn H, Rieger B, Rosenkranz D, Witek A, Welch DB, Ebersberger I, Hankeln T.

PLoS One. 2014 Feb 10;9(2):e88618. doi: 10.1371/journal.pone.0088618. eCollection 2014.


New phylogenomic data support the monophyly of Lophophorata and an Ectoproct-Phoronid clade and indicate that Polyzoa and Kryptrochozoa are caused by systematic bias.

Nesnidal MP, Helmkampf M, Meyer A, Witek A, Bruchhaus I, Ebersberger I, Hankeln T, Lieb B, Struck TH, Hausdorf B.

BMC Evol Biol. 2013 Nov 17;13:253. doi: 10.1186/1471-2148-13-253.


The evolution of the ribosome biogenesis pathway from a yeast perspective.

Ebersberger I, Simm S, Leisegang MS, Schmitzberger P, Mirus O, von Haeseler A, Bohnsack MT, Schleiff E.

Nucleic Acids Res. 2014 Feb;42(3):1509-23. doi: 10.1093/nar/gkt1137. Epub 2013 Nov 14.


Decisive data sets in phylogenomics: lessons from studies on the phylogenetic relationships of primarily wingless insects.

Dell'Ampio E, Meusemann K, Szucsich NU, Peters RS, Meyer B, Borner J, Petersen M, Aberer AJ, Stamatakis A, Walzl MG, Minh BQ, von Haeseler A, Ebersberger I, Pass G, Misof B.

Mol Biol Evol. 2014 Jan;31(1):239-49. doi: 10.1093/molbev/mst196. Epub 2013 Oct 18.


REvolver: modeling sequence evolution under domain constraints.

Koestler T, von Haeseler A, Ebersberger I.

Mol Biol Evol. 2012 Sep;29(9):2133-45. doi: 10.1093/molbev/mss078. Epub 2012 Mar 1.


A consistent phylogenetic backbone for the fungi.

Ebersberger I, de Matos Simoes R, Kupczok A, Gube M, Kothe E, Voigt K, von Haeseler A.

Mol Biol Evol. 2012 May;29(5):1319-34. doi: 10.1093/molbev/msr285. Epub 2011 Nov 22.


Pancrustacean phylogeny in the light of new phylogenomic data: support for Remipedia as the possible sister group of Hexapoda.

von Reumont BM, Jenner RA, Wills MA, Dell'ampio E, Pass G, Ebersberger I, Meyer B, Koenemann S, Iliffe TM, Stamatakis A, Niehuis O, Meusemann K, Misof B.

Mol Biol Evol. 2012 Mar;29(3):1031-45. doi: 10.1093/molbev/msr270. Epub 2011 Nov 1.


The plant heat stress transcription factor (Hsf) family: structure, function and evolution.

Scharf KD, Berberich T, Ebersberger I, Nover L.

Biochim Biophys Acta. 2012 Feb;1819(2):104-19. doi: 10.1016/j.bbagrm.2011.10.002. Epub 2011 Oct 17. Review.


Phylogenomic analyses of malaria parasites and evolution of their exported proteins.

Pick C, Ebersberger I, Spielmann T, Bruchhaus I, Burmester T.

BMC Evol Biol. 2011 Jun 15;11:167. doi: 10.1186/1471-2148-11-167.


Zygomycetes, microsporidia, and the evolutionary ancestry of sex determination.

Koestler T, Ebersberger I.

Genome Biol Evol. 2011;3:186-94. doi: 10.1093/gbe/evr009. Epub 2011 Feb 9.


FACT: functional annotation transfer between proteins with similar feature architectures.

Koestler T, von Haeseler A, Ebersberger I.

BMC Bioinformatics. 2010 Aug 9;11:417. doi: 10.1186/1471-2105-11-417.


A phylogenomic approach to resolve the arthropod tree of life.

Meusemann K, von Reumont BM, Simon S, Roeding F, Strauss S, Kück P, Ebersberger I, Walzl M, Pass G, Breuers S, Achter V, von Haeseler A, Burmester T, Hadrys H, Wägele JW, Misof B.

Mol Biol Evol. 2010 Nov;27(11):2451-64. doi: 10.1093/molbev/msq130. Epub 2010 Jun 9.


Support for the monophyletic origin of Gnathifera from phylogenomics.

Witek A, Herlyn H, Ebersberger I, Mark Welch DB, Hankeln T.

Mol Phylogenet Evol. 2009 Dec;53(3):1037-41. doi: 10.1016/j.ympev.2009.07.031. Epub 2009 Aug 3.


HaMStR: profile hidden markov model based search for orthologs in ESTs.

Ebersberger I, Strauss S, von Haeseler A.

BMC Evol Biol. 2009 Jul 8;9:157. doi: 10.1186/1471-2148-9-157.

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