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Results: 1 to 20 of 42

1.

Mitochondrial DNA as a tool for reconstructing past life-history traits in mammals.

Figuet E, Romiguier J, Dutheil JY, Galtier N.

J Evol Biol. 2014 May;27(5):899-910. doi: 10.1111/jeb.12361. Epub 2014 Apr 10.

PMID:
24720883
[PubMed - in process]
2.

MafFilter: a highly flexible and extensible multiple genome alignment files processor.

Dutheil JY, Gaillard S, Stukenbrock EH.

BMC Genomics. 2014 Jan 22;15:53. doi: 10.1186/1471-2164-15-53.

PMID:
24447531
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

A fine-scale recombination map of the human-chimpanzee ancestor reveals faster change in humans than in chimpanzees and a strong impact of GC-biased gene conversion.

Munch K, Mailund T, Dutheil JY, Schierup MH.

Genome Res. 2014 Mar;24(3):467-74. doi: 10.1101/gr.158469.113. Epub 2013 Nov 4.

PMID:
24190946
[PubMed - in process]
Free PMC Article
4.

Bio++: efficient extensible libraries and tools for computational molecular evolution.

Guéguen L, Gaillard S, Boussau B, Gouy M, Groussin M, Rochette NC, Bigot T, Fournier D, Pouyet F, Cahais V, Bernard A, Scornavacca C, Nabholz B, Haudry A, Dachary L, Galtier N, Belkhir K, Dutheil JY.

Mol Biol Evol. 2013 Aug;30(8):1745-50. doi: 10.1093/molbev/mst097. Epub 2013 May 21.

PMID:
23699471
[PubMed - indexed for MEDLINE]
Free Article
5.

Asymmetric morphogenetic cues along the transverse plane: shift from disymmetry to zygomorphy in the flower of Fumarioideae.

Damerval C, Citerne H, Le Guilloux M, Domenichini S, Dutheil J, Ronse de Craene L, Nadot S.

Am J Bot. 2013 Feb;100(2):391-402. doi: 10.3732/ajb.1200376. Epub 2013 Feb 1.

PMID:
23378492
[PubMed - indexed for MEDLINE]
Free Article
6.

A new isolation with migration model along complete genomes infers very different divergence processes among closely related great ape species.

Mailund T, Halager AE, Westergaard M, Dutheil JY, Munch K, Andersen LN, Lunter G, Prüfer K, Scally A, Hobolth A, Schierup MH.

PLoS Genet. 2012;8(12):e1003125. doi: 10.1371/journal.pgen.1003125. Epub 2012 Dec 20.

PMID:
23284294
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

The AbrB2 autorepressor, expressed from an atypical promoter, represses the hydrogenase operon to regulate hydrogen production in Synechocystis strain PCC6803.

Dutheil J, Saenkham P, Sakr S, Leplat C, Ortega-Ramos M, Bottin H, Cournac L, Cassier-Chauvat C, Chauvat F.

J Bacteriol. 2012 Oct;194(19):5423-33. doi: 10.1128/JB.00543-12. Epub 2012 Aug 3.

PMID:
22865847
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

The bonobo genome compared with the chimpanzee and human genomes.

Prüfer K, Munch K, Hellmann I, Akagi K, Miller JR, Walenz B, Koren S, Sutton G, Kodira C, Winer R, Knight JR, Mullikin JC, Meader SJ, Ponting CP, Lunter G, Higashino S, Hobolth A, Dutheil J, Karakoç E, Alkan C, Sajjadian S, Catacchio CR, Ventura M, Marques-Bonet T, Eichler EE, André C, Atencia R, Mugisha L, Junhold J, Patterson N, Siebauer M, Good JM, Fischer A, Ptak SE, Lachmann M, Symer DE, Mailund T, Schierup MH, Andrés AM, Kelso J, Pääbo S.

Nature. 2012 Jun 28;486(7404):527-31. doi: 10.1038/nature11128.

PMID:
22722832
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Fusion of two divergent fungal individuals led to the recent emergence of a unique widespread pathogen species.

Stukenbrock EH, Christiansen FB, Hansen TT, Dutheil JY, Schierup MH.

Proc Natl Acad Sci U S A. 2012 Jul 3;109(27):10954-9. doi: 10.1073/pnas.1201403109. Epub 2012 Jun 18.

PMID:
22711811
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Fast and robust characterization of time-heterogeneous sequence evolutionary processes using substitution mapping.

Romiguier J, Figuet E, Galtier N, Douzery EJ, Boussau B, Dutheil JY, Ranwez V.

PLoS One. 2012;7(3):e33852. doi: 10.1371/journal.pone.0033852. Epub 2012 Mar 27.

PMID:
22479459
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Ancestral population genomics.

Dutheil JY, Hobolth A.

Methods Mol Biol. 2012;856:293-313. doi: 10.1007/978-1-61779-585-5_12. Review.

PMID:
22399464
[PubMed - indexed for MEDLINE]
12.

Insights into hominid evolution from the gorilla genome sequence.

Scally A, Dutheil JY, Hillier LW, Jordan GE, Goodhead I, Herrero J, Hobolth A, Lappalainen T, Mailund T, Marques-Bonet T, McCarthy S, Montgomery SH, Schwalie PC, Tang YA, Ward MC, Xue Y, Yngvadottir B, Alkan C, Andersen LN, Ayub Q, Ball EV, Beal K, Bradley BJ, Chen Y, Clee CM, Fitzgerald S, Graves TA, Gu Y, Heath P, Heger A, Karakoc E, Kolb-Kokocinski A, Laird GK, Lunter G, Meader S, Mort M, Mullikin JC, Munch K, O'Connor TD, Phillips AD, Prado-Martinez J, Rogers AS, Sajjadian S, Schmidt D, Shaw K, Simpson JT, Stenson PD, Turner DJ, Vigilant L, Vilella AJ, Whitener W, Zhu B, Cooper DN, de Jong P, Dermitzakis ET, Eichler EE, Flicek P, Goldman N, Mundy NI, Ning Z, Odom DT, Ponting CP, Quail MA, Ryder OA, Searle SM, Warren WC, Wilson RK, Schierup MH, Rogers J, Tyler-Smith C, Durbin R.

Nature. 2012 Mar 7;483(7388):169-75. doi: 10.1038/nature10842.

PMID:
22398555
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Oral thromboprophylaxis following total hip replacement: the issue of compliance.

Lebel B, Malherbe M, Gouzy S, Parienti JJ, Dutheil JJ, Barrellier MT, Vielpeau C.

Orthop Traumatol Surg Res. 2012 Apr;98(2):186-92. doi: 10.1016/j.otsr.2011.10.010. Epub 2012 Mar 3.

PMID:
22386648
[PubMed - indexed for MEDLINE]
Free Article
14.

Efficient selection of branch-specific models of sequence evolution.

Dutheil JY, Galtier N, Romiguier J, Douzery EJ, Ranwez V, Boussau B.

Mol Biol Evol. 2012 Jul;29(7):1861-74. doi: 10.1093/molbev/mss059. Epub 2012 Feb 2.

PMID:
22319139
[PubMed - indexed for MEDLINE]
Free Article
15.

Accelerated evolution and coevolution drove the evolutionary history of AGPase sub-units during angiosperm radiation.

Corbi J, Dutheil JY, Damerval C, Tenaillon MI, Manicacci D.

Ann Bot. 2012 Mar;109(4):693-708. doi: 10.1093/aob/mcr303. Epub 2012 Feb 2.

PMID:
22307567
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Comparing fungal genomes: insight into functional and evolutionary processes.

Stukenbrock EH, Dutheil JY.

Methods Mol Biol. 2012;835:531-48. doi: 10.1007/978-1-61779-501-5_33.

PMID:
22183676
[PubMed - indexed for MEDLINE]
17.

Evolution of acute coronary syndrome with normal coronary arteries and normal cardiac magnetic resonance imaging.

Chopard R, Jehl J, Dutheil J, Genon VD, Seronde MF, Kastler B, Schiele F, Meneveau N.

Arch Cardiovasc Dis. 2011 Oct;104(10):509-17. doi: 10.1016/j.acvd.2011.05.004. Epub 2011 Sep 1.

PMID:
22044703
[PubMed - indexed for MEDLINE]
Free Article
18.

The making of a new pathogen: insights from comparative population genomics of the domesticated wheat pathogen Mycosphaerella graminicola and its wild sister species.

Stukenbrock EH, Bataillon T, Dutheil JY, Hansen TT, Li R, Zala M, McDonald BA, Wang J, Schierup MH.

Genome Res. 2011 Dec;21(12):2157-66. doi: 10.1101/gr.118851.110. Epub 2011 Oct 12.

PMID:
21994252
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Detecting coevolving positions in a molecule: why and how to account for phylogeny.

Dutheil JY.

Brief Bioinform. 2012 Mar;13(2):228-43. doi: 10.1093/bib/bbr048. Epub 2011 Sep 24. Review.

PMID:
21949241
[PubMed - indexed for MEDLINE]
Free Article
20.

Total knee arthroplasty three-dimensional kinematic estimation prevision. From a two-dimensional fluoroscopy acquired dynamic model.

Lebel BP, Pineau V, Gouzy SL, Geais L, Parienti JJ, Dutheil JJ, Vielpeau CH.

Orthop Traumatol Surg Res. 2011 Apr;97(2):111-20. doi: 10.1016/j.otsr.2011.01.003.

PMID:
21439928
[PubMed - indexed for MEDLINE]
Free Article

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