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Results: 1 to 20 of 114

1.

Estimation of the RNU2 macrosatellite mutation rate by BRCA1 mutation tracing.

Tessereau C, Lesecque Y, Monnet N, Buisson M, Barjhoux L, Léoné M, Feng B, Goldgar DE, Sinilnikova OM, Mousset S, Duret L, Mazoyer S.

Nucleic Acids Res. 2014 Jul 17. pii: gku639. [Epub ahead of print]

PMID:
25034697
[PubMed - as supplied by publisher]
Free Article
2.

The spatiotemporal program of DNA replication is associated with specific combinations of chromatin marks in human cells.

Picard F, Cadoret JC, Audit B, Arneodo A, Alberti A, Battail C, Duret L, Prioleau MN.

PLoS Genet. 2014 May 1;10(5):e1004282. doi: 10.1371/journal.pgen.1004282. eCollection 2014 May.

PMID:
24785686
[PubMed - in process]
Free PMC Article
3.

Strong heterogeneity in mutation rate causes misleading hallmarks of natural selection on indel mutations in the human genome.

Kvikstad EM, Duret L.

Mol Biol Evol. 2014 Jan;31(1):23-36. doi: 10.1093/molbev/mst185. Epub 2013 Oct 9.

PMID:
24113537
[PubMed - in process]
Free PMC Article
4.

Is RAD-seq suitable for phylogenetic inference? An in silico assessment and optimization.

Cariou M, Duret L, Charlat S.

Ecol Evol. 2013 Apr;3(4):846-52. doi: 10.1002/ece3.512. Epub 2013 Feb 27.

PMID:
23610629
[PubMed]
Free PMC Article
5.

GC-biased gene conversion in yeast is specifically associated with crossovers: molecular mechanisms and evolutionary significance.

Lesecque Y, Mouchiroud D, Duret L.

Mol Biol Evol. 2013 Jun;30(6):1409-19. doi: 10.1093/molbev/mst056. Epub 2013 Mar 16.

PMID:
23505044
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

The origin, evolution, and functional impact of short insertion-deletion variants identified in 179 human genomes.

Montgomery SB, Goode DL, Kvikstad E, Albers CA, Zhang ZD, Mu XJ, Ananda G, Howie B, Karczewski KJ, Smith KS, Anaya V, Richardson R, Davis J; 1000 Genomes Project Consortium, MacArthur DG, Sidow A, Duret L, Gerstein M, Makova KD, Marchini J, McVean G, Lunter G.

Genome Res. 2013 May;23(5):749-61. doi: 10.1101/gr.148718.112. Epub 2013 Mar 11.

PMID:
23478400
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

XACT, a long noncoding transcript coating the active X chromosome in human pluripotent cells.

Vallot C, Huret C, Lesecque Y, Resch A, Oudrhiri N, Bennaceur-Griscelli A, Duret L, Rougeulle C.

Nat Genet. 2013 Mar;45(3):239-41. doi: 10.1038/ng.2530. Epub 2013 Jan 20.

PMID:
23334669
[PubMed - indexed for MEDLINE]
8.

Genome-scale coestimation of species and gene trees.

Boussau B, Szöllosi GJ, Duret L, Gouy M, Tannier E, Daubin V.

Genome Res. 2013 Feb;23(2):323-30. doi: 10.1101/gr.141978.112. Epub 2012 Nov 6.

PMID:
23132911
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

The Paramecium germline genome provides a niche for intragenic parasitic DNA: evolutionary dynamics of internal eliminated sequences.

Arnaiz O, Mathy N, Baudry C, Malinsky S, Aury JM, Wilkes CD, Garnier O, Labadie K, Lauderdale BE, Le Mouël A, Marmignon A, Nowacki M, Poulain J, Prajer M, Wincker P, Meyer E, Duharcourt S, Duret L, Bétermier M, Sperling L.

PLoS Genet. 2012;8(10):e1002984. doi: 10.1371/journal.pgen.1002984. Epub 2012 Oct 4.

PMID:
23071448
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Evidence for widespread GC-biased gene conversion in eukaryotes.

Pessia E, Popa A, Mousset S, Rezvoy C, Duret L, Marais GA.

Genome Biol Evol. 2012;4(7):675-82. doi: 10.1093/gbe/evs052. Epub 2012 May 23.

PMID:
22628461
[PubMed - indexed for MEDLINE]
Free Article
11.

High-quality sequence clustering guided by network topology and multiple alignment likelihood.

Miele V, Penel S, Daubin V, Picard F, Kahn D, Duret L.

Bioinformatics. 2012 Apr 15;28(8):1078-85. doi: 10.1093/bioinformatics/bts098. Epub 2012 Feb 25.

PMID:
22368255
[PubMed - indexed for MEDLINE]
Free Article
12.

Preventing dangerous nonsense: selection for robustness to transcriptional error in human genes.

Cusack BP, Arndt PF, Duret L, Roest Crollius H.

PLoS Genet. 2011 Oct;7(10):e1002276. doi: 10.1371/journal.pgen.1002276. Epub 2011 Oct 13.

PMID:
22022272
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Ultra-fast sequence clustering from similarity networks with SiLiX.

Miele V, Penel S, Duret L.

BMC Bioinformatics. 2011 Apr 22;12:116. doi: 10.1186/1471-2105-12-116.

PMID:
21513511
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations.

Rouxel T, Grandaubert J, Hane JK, Hoede C, van de Wouw AP, Couloux A, Dominguez V, Anthouard V, Bally P, Bourras S, Cozijnsen AJ, Ciuffetti LM, Degrave A, Dilmaghani A, Duret L, Fudal I, Goodwin SB, Gout L, Glaser N, Linglin J, Kema GH, Lapalu N, Lawrence CB, May K, Meyer M, Ollivier B, Poulain J, Schoch CL, Simon A, Spatafora JW, Stachowiak A, Turgeon BG, Tyler BM, Vincent D, Weissenbach J, Amselem J, Quesneville H, Oliver RP, Wincker P, Balesdent MH, Howlett BJ.

Nat Commun. 2011 Feb 15;2:202. doi: 10.1038/ncomms1189.

PMID:
21326234
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Meiotic recombination favors the spreading of deleterious mutations in human populations.

Necşulea A, Popa A, Cooper DN, Stenson PD, Mouchiroud D, Gautier C, Duret L.

Hum Mutat. 2011 Feb;32(2):198-206. doi: 10.1002/humu.21407. Epub 2011 Jan 25.

PMID:
21120948
[PubMed - indexed for MEDLINE]
16.

Ftx is a non-coding RNA which affects Xist expression and chromatin structure within the X-inactivation center region.

Chureau C, Chantalat S, Romito A, Galvani A, Duret L, Avner P, Rougeulle C.

Hum Mol Genet. 2011 Feb 15;20(4):705-18. doi: 10.1093/hmg/ddq516. Epub 2010 Nov 30.

PMID:
21118898
[PubMed - indexed for MEDLINE]
Free Article
17.

Gene expression in a paleopolyploid: a transcriptome resource for the ciliate Paramecium tetraurelia.

Arnaiz O, Goût JF, Bétermier M, Bouhouche K, Cohen J, Duret L, Kapusta A, Meyer E, Sperling L.

BMC Genomics. 2010 Oct 8;11:547. doi: 10.1186/1471-2164-11-547.

PMID:
20932287
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Detecting positive selection within genomes: the problem of biased gene conversion.

Ratnakumar A, Mousset S, Glémin S, Berglund J, Galtier N, Duret L, Webster MT.

Philos Trans R Soc Lond B Biol Sci. 2010 Aug 27;365(1552):2571-80. doi: 10.1098/rstb.2010.0007.

PMID:
20643747
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

The relationship among gene expression, the evolution of gene dosage, and the rate of protein evolution.

Gout JF, Kahn D, Duret L; Paramecium Post-Genomics Consortium.

PLoS Genet. 2010 May 13;6(5):e1000944. doi: 10.1371/journal.pgen.1000944. Erratum in: PLoS Genet. 2010;6(6). doi: 10.1371/annotation/c55d5089-ba2f-449d-8696-2bc8395978db.

PMID:
20485561
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Immunocytochemistry of Paramecium cytoskeletal structures.

Beisson J, Bétermier M, Bré MH, Cohen J, Duharcourt S, Duret L, Kung C, Malinsky S, Meyer E, Preer JR Jr, Sperling L.

Cold Spring Harb Protoc. 2010 Jan;2010(1):pdb.prot5365. doi: 10.1101/pdb.prot5365. No abstract available.

PMID:
20150124
[PubMed - indexed for MEDLINE]

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