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Results: 1 to 20 of 118


Optimization of multiplexed RADseq libraries using low-cost adaptors.

Henri H, Cariou M, Terraz G, Martinez S, El Filali A, Veyssiere M, Duret L, Charlat S.

Genetica. 2015 Apr;143(2):139-43. doi: 10.1007/s10709-015-9828-3. Epub 2015 Feb 11.


GC-Content evolution in bacterial genomes: the biased gene conversion hypothesis expands.

Lassalle F, Périan S, Bataillon T, Nesme X, Duret L, Daubin V.

PLoS Genet. 2015 Feb 6;11(2):e1004941. doi: 10.1371/journal.pgen.1004941. eCollection 2015 Feb.


The red queen model of recombination hotspots evolution in the light of archaic and modern human genomes.

Lesecque Y, Glémin S, Lartillot N, Mouchiroud D, Duret L.

PLoS Genet. 2014 Nov 13;10(11):e1004790. doi: 10.1371/journal.pgen.1004790. eCollection 2014 Nov.


Comparative population genomics in animals uncovers the determinants of genetic diversity.

Romiguier J, Gayral P, Ballenghien M, Bernard A, Cahais V, Chenuil A, Chiari Y, Dernat R, Duret L, Faivre N, Loire E, Lourenco JM, Nabholz B, Roux C, Tsagkogeorga G, Weber AA, Weinert LA, Belkhir K, Bierne N, Glémin S, Galtier N.

Nature. 2014 Nov 13;515(7526):261-3. doi: 10.1038/nature13685. Epub 2014 Aug 20.


Estimation of the RNU2 macrosatellite mutation rate by BRCA1 mutation tracing.

Tessereau C, Lesecque Y, Monnet N, Buisson M, Barjhoux L, Léoné M, Feng B, Goldgar DE, Sinilnikova OM, Mousset S, Duret L, Mazoyer S.

Nucleic Acids Res. 2014 Aug;42(14):9121-30. doi: 10.1093/nar/gku639. Epub 2014 Jul 17.


The spatiotemporal program of DNA replication is associated with specific combinations of chromatin marks in human cells.

Picard F, Cadoret JC, Audit B, Arneodo A, Alberti A, Battail C, Duret L, Prioleau MN.

PLoS Genet. 2014 May 1;10(5):e1004282. doi: 10.1371/journal.pgen.1004282. eCollection 2014 May.


Strong heterogeneity in mutation rate causes misleading hallmarks of natural selection on indel mutations in the human genome.

Kvikstad EM, Duret L.

Mol Biol Evol. 2014 Jan;31(1):23-36. doi: 10.1093/molbev/mst185. Epub 2013 Oct 9.


Is RAD-seq suitable for phylogenetic inference? An in silico assessment and optimization.

Cariou M, Duret L, Charlat S.

Ecol Evol. 2013 Apr;3(4):846-52. doi: 10.1002/ece3.512. Epub 2013 Feb 27.


GC-biased gene conversion in yeast is specifically associated with crossovers: molecular mechanisms and evolutionary significance.

Lesecque Y, Mouchiroud D, Duret L.

Mol Biol Evol. 2013 Jun;30(6):1409-19. doi: 10.1093/molbev/mst056. Epub 2013 Mar 16.


The origin, evolution, and functional impact of short insertion-deletion variants identified in 179 human genomes.

Montgomery SB, Goode DL, Kvikstad E, Albers CA, Zhang ZD, Mu XJ, Ananda G, Howie B, Karczewski KJ, Smith KS, Anaya V, Richardson R, Davis J; 1000 Genomes Project Consortium, MacArthur DG, Sidow A, Duret L, Gerstein M, Makova KD, Marchini J, McVean G, Lunter G.

Genome Res. 2013 May;23(5):749-61. doi: 10.1101/gr.148718.112. Epub 2013 Mar 11.


XACT, a long noncoding transcript coating the active X chromosome in human pluripotent cells.

Vallot C, Huret C, Lesecque Y, Resch A, Oudrhiri N, Bennaceur-Griscelli A, Duret L, Rougeulle C.

Nat Genet. 2013 Mar;45(3):239-41. doi: 10.1038/ng.2530. Epub 2013 Jan 20.


Genome-scale coestimation of species and gene trees.

Boussau B, Szöllosi GJ, Duret L, Gouy M, Tannier E, Daubin V.

Genome Res. 2013 Feb;23(2):323-30. doi: 10.1101/gr.141978.112. Epub 2012 Nov 6.


The Paramecium germline genome provides a niche for intragenic parasitic DNA: evolutionary dynamics of internal eliminated sequences.

Arnaiz O, Mathy N, Baudry C, Malinsky S, Aury JM, Denby Wilkes C, Garnier O, Labadie K, Lauderdale BE, Le Mouël A, Marmignon A, Nowacki M, Poulain J, Prajer M, Wincker P, Meyer E, Duharcourt S, Duret L, Bétermier M, Sperling L.

PLoS Genet. 2012;8(10):e1002984. doi: 10.1371/journal.pgen.1002984. Epub 2012 Oct 4.


Evidence for widespread GC-biased gene conversion in eukaryotes.

Pessia E, Popa A, Mousset S, Rezvoy C, Duret L, Marais GA.

Genome Biol Evol. 2012;4(7):675-82. doi: 10.1093/gbe/evs052. Epub 2012 May 23.


High-quality sequence clustering guided by network topology and multiple alignment likelihood.

Miele V, Penel S, Daubin V, Picard F, Kahn D, Duret L.

Bioinformatics. 2012 Apr 15;28(8):1078-85. doi: 10.1093/bioinformatics/bts098. Epub 2012 Feb 25.


Preventing dangerous nonsense: selection for robustness to transcriptional error in human genes.

Cusack BP, Arndt PF, Duret L, Roest Crollius H.

PLoS Genet. 2011 Oct;7(10):e1002276. doi: 10.1371/journal.pgen.1002276. Epub 2011 Oct 13.


Ultra-fast sequence clustering from similarity networks with SiLiX.

Miele V, Penel S, Duret L.

BMC Bioinformatics. 2011 Apr 22;12:116. doi: 10.1186/1471-2105-12-116.


Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations.

Rouxel T, Grandaubert J, Hane JK, Hoede C, van de Wouw AP, Couloux A, Dominguez V, Anthouard V, Bally P, Bourras S, Cozijnsen AJ, Ciuffetti LM, Degrave A, Dilmaghani A, Duret L, Fudal I, Goodwin SB, Gout L, Glaser N, Linglin J, Kema GH, Lapalu N, Lawrence CB, May K, Meyer M, Ollivier B, Poulain J, Schoch CL, Simon A, Spatafora JW, Stachowiak A, Turgeon BG, Tyler BM, Vincent D, Weissenbach J, Amselem J, Quesneville H, Oliver RP, Wincker P, Balesdent MH, Howlett BJ.

Nat Commun. 2011 Feb 15;2:202. doi: 10.1038/ncomms1189.


Meiotic recombination favors the spreading of deleterious mutations in human populations.

Necşulea A, Popa A, Cooper DN, Stenson PD, Mouchiroud D, Gautier C, Duret L.

Hum Mutat. 2011 Feb;32(2):198-206. doi: 10.1002/humu.21407. Epub 2011 Jan 25.


Ftx is a non-coding RNA which affects Xist expression and chromatin structure within the X-inactivation center region.

Chureau C, Chantalat S, Romito A, Galvani A, Duret L, Avner P, Rougeulle C.

Hum Mol Genet. 2011 Feb 15;20(4):705-18. doi: 10.1093/hmg/ddq516. Epub 2010 Nov 30.

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