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Results: 1 to 20 of 97

1.

[Case of young woman with Graves' disease and incomplete distal renal tubular acidosis with severe progress and cardiac arrest].

Klimm W, Kade G, Spaleniak S, Dubchak I, Niemczyk S.

Pol Merkur Lekarski. 2014 Jul;37(217):53-5. Polish.

PMID:
25154201
[PubMed - in process]
2.

The genome of Eucalyptus grandis.

Myburg AA, Grattapaglia D, Tuskan GA, Hellsten U, Hayes RD, Grimwood J, Jenkins J, Lindquist E, Tice H, Bauer D, Goodstein DM, Dubchak I, Poliakov A, Mizrachi E, Kullan AR, Hussey SG, Pinard D, van der Merwe K, Singh P, van Jaarsveld I, Silva-Junior OB, Togawa RC, Pappas MR, Faria DA, Sansaloni CP, Petroli CD, Yang X, Ranjan P, Tschaplinski TJ, Ye CY, Li T, Sterck L, Vanneste K, Murat F, Soler M, Clemente HS, Saidi N, Cassan-Wang H, Dunand C, Hefer CA, Bornberg-Bauer E, Kersting AR, Vining K, Amarasinghe V, Ranik M, Naithani S, Elser J, Boyd AE, Liston A, Spatafora JW, Dharmwardhana P, Raja R, Sullivan C, Romanel E, Alves-Ferreira M, Külheim C, Foley W, Carocha V, Paiva J, Kudrna D, Brommonschenkel SH, Pasquali G, Byrne M, Rigault P, Tibbits J, Spokevicius A, Jones RC, Steane DA, Vaillancourt RE, Potts BM, Joubert F, Barry K, Pappas GJ, Strauss SH, Jaiswal P, Grima-Pettenati J, Salse J, Van de Peer Y, Rokhsar DS, Schmutz J.

Nature. 2014 Jun 19;510(7505):356-62. doi: 10.1038/nature13308. Epub 2014 Jun 11.

PMID:
24919147
[PubMed - indexed for MEDLINE]
3.

[In the search for effective and safe dose of amikacin in patients with chronic kidney disease].

Gomółka M, Szamotulska K, Rymarz A, Brodowska-Kania D, Dubchak I, Piechota W, Jurkiewicz D, Niemczyk S.

Pol Merkur Lekarski. 2014 Apr;36(214):240-4. Polish.

PMID:
24868895
[PubMed - indexed for MEDLINE]
4.

GenomeVISTA-an integrated software package for whole-genome alignment and visualization.

Poliakov A, Foong J, Brudno M, Dubchak I.

Bioinformatics. 2014 May 23. pii: btu355. [Epub ahead of print]

PMID:
24860159
[PubMed - as supplied by publisher]
5.

MycoCosm portal: gearing up for 1000 fungal genomes.

Grigoriev IV, Nikitin R, Haridas S, Kuo A, Ohm R, Otillar R, Riley R, Salamov A, Zhao X, Korzeniewski F, Smirnova T, Nordberg H, Dubchak I, Shabalov I.

Nucleic Acids Res. 2014 Jan;42(Database issue):D699-704. doi: 10.1093/nar/gkt1183. Epub 2013 Dec 1.

PMID:
24297253
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

High-throughput translational medicine: challenges and solutions.

Sulakhe D, Balasubramanian S, Xie B, Berrocal E, Feng B, Taylor A, Chitturi B, Dave U, Agam G, Xu J, Börnigen D, Dubchak I, Gilliam TC, Maltsev N.

Adv Exp Med Biol. 2014;799:39-67. doi: 10.1007/978-1-4614-8778-4_3. Review.

PMID:
24292961
[PubMed - indexed for MEDLINE]
7.

The genome portal of the Department of Energy Joint Genome Institute: 2014 updates.

Nordberg H, Cantor M, Dusheyko S, Hua S, Poliakov A, Shabalov I, Smirnova T, Grigoriev IV, Dubchak I.

Nucleic Acids Res. 2014 Jan;42(Database issue):D26-31. doi: 10.1093/nar/gkt1069. Epub 2013 Nov 12.

PMID:
24225321
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

RegPrecise 3.0--a resource for genome-scale exploration of transcriptional regulation in bacteria.

Novichkov PS, Kazakov AE, Ravcheev DA, Leyn SA, Kovaleva GY, Sutormin RA, Kazanov MD, Riehl W, Arkin AP, Dubchak I, Rodionov DA.

BMC Genomics. 2013 Nov 1;14:745. doi: 10.1186/1471-2164-14-745.

PMID:
24175918
[PubMed - in process]
Free PMC Article
9.

New family of tungstate-responsive transcriptional regulators in sulfate-reducing bacteria.

Kazakov AE, Rajeev L, Luning EG, Zane GM, Siddartha K, Rodionov DA, Dubchak I, Arkin AP, Wall JD, Mukhopadhyay A, Novichkov PS.

J Bacteriol. 2013 Oct;195(19):4466-75. doi: 10.1128/JB.00679-13. Epub 2013 Aug 2.

PMID:
23913324
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Whole-Genome rVISTA: a tool to determine enrichment of transcription factor binding sites in gene promoters from transcriptomic data.

Dubchak I, Munoz M, Poliakov A, Salomonis N, Minovitsky S, Bodmer R, Zambon AC.

Bioinformatics. 2013 Aug 15;29(16):2059-61. doi: 10.1093/bioinformatics/btt318. Epub 2013 Jun 4.

PMID:
23736530
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

RegTransBase--a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes.

Cipriano MJ, Novichkov PN, Kazakov AE, Rodionov DA, Arkin AP, Gelfand MS, Dubchak I.

BMC Genomics. 2013 Apr 2;14:213. doi: 10.1186/1471-2164-14-213.

PMID:
23547897
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Transcription factor family-based reconstruction of singleton regulons and study of the Crp/Fnr, ArsR, and GntR families in Desulfovibrionales genomes.

Kazakov AE, Rodionov DA, Price MN, Arkin AP, Dubchak I, Novichkov PS.

J Bacteriol. 2013 Jan;195(1):29-38. doi: 10.1128/JB.01977-12. Epub 2012 Oct 19.

PMID:
23086211
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

RegPrecise web services interface: programmatic access to the transcriptional regulatory interactions in bacteria reconstructed by comparative genomics.

Novichkov PS, Brettin TS, Novichkova ES, Dehal PS, Arkin AP, Dubchak I, Rodionov DA.

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W604-8. doi: 10.1093/nar/gks562. Epub 2012 Jun 14.

PMID:
22700702
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

[Rapid course of Churge-Strauss syndrome--since appearance of asthma till development of renal failure and neurological complication].

Dubchak I, Gomółka M, Niemczyk S.

Pol Merkur Lekarski. 2012 Mar;32(189):170-2. Polish.

PMID:
22568182
[PubMed - indexed for MEDLINE]
15.

The genome portal of the Department of Energy Joint Genome Institute.

Grigoriev IV, Nordberg H, Shabalov I, Aerts A, Cantor M, Goodstein D, Kuo A, Minovitsky S, Nikitin R, Ohm RA, Otillar R, Poliakov A, Ratnere I, Riley R, Smirnova T, Rokhsar D, Dubchak I.

Nucleic Acids Res. 2012 Jan;40(Database issue):D26-32. doi: 10.1093/nar/gkr947. Epub 2011 Nov 22.

PMID:
22110030
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus.

Rodionov DA, Novichkov PS, Stavrovskaya ED, Rodionova IA, Li X, Kazanov MD, Ravcheev DA, Gerasimova AV, Kazakov AE, Kovaleva GY, Permina EA, Laikova ON, Overbeek R, Romine MF, Fredrickson JK, Arkin AP, Dubchak I, Osterman AL, Gelfand MS.

BMC Genomics. 2011 Jun 15;12 Suppl 1:S3. doi: 10.1186/1471-2164-12-S1-S3.

PMID:
21810205
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

VISTA Region Viewer (RViewer)--a computational system for prioritizing genomic intervals for biomedical studies.

Lukashin I, Novichkov P, Boffelli D, Paciorkowski AR, Minovitsky S, Yang S, Dubchak I.

Bioinformatics. 2011 Sep 15;27(18):2595-7. doi: 10.1093/bioinformatics/btr440. Epub 2011 Jul 26.

PMID:
21791533
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Comparative genomics of the dormancy regulons in mycobacteria.

Gerasimova A, Kazakov AE, Arkin AP, Dubchak I, Gelfand MS.

J Bacteriol. 2011 Jul;193(14):3446-52. doi: 10.1128/JB.00179-11. Epub 2011 May 20.

PMID:
21602344
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Tandem termination signal in plant mRNAs.

Kochetov AV, Volkova OA, Poliakov A, Dubchak I, Rogozin IB.

Gene. 2011 Jul 15;481(1):1-6. doi: 10.1016/j.gene.2011.04.002. Epub 2011 Apr 22.

PMID:
21539902
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach.

Novichkov PS, Rodionov DA, Stavrovskaya ED, Novichkova ES, Kazakov AE, Gelfand MS, Arkin AP, Mironov AA, Dubchak I.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W299-307. doi: 10.1093/nar/gkq531. Epub 2010 Jun 11.

PMID:
20542910
[PubMed - indexed for MEDLINE]
Free PMC Article

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