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SPATIAL: A System-level PAThway Impact AnaLysis approach.

Bokanizad B, Tagett R, Ansari S, Helmi BH, Draghici S.

Nucleic Acids Res. 2016 May 18. pii: gkw429. [Epub ahead of print]


Cross-Clustering: A Partial Clustering Algorithm with Automatic Estimation of the Number of Clusters.

Tellaroli P, Bazzi M, Donato M, Brazzale AR, Drăghici S.

PLoS One. 2016 Mar 25;11(3):e0152333. doi: 10.1371/journal.pone.0152333. eCollection 2016.


Quantitative proteomics reveals novel protein interaction partners of PP2A catalytic subunit in pancreatic β-cells.

Zhang X, Damacharla D, Ma D, Qi Y, Tagett R, Draghici S, Kowluru A, Yi Z.

Mol Cell Endocrinol. 2016 Mar 15;424:1-11. doi: 10.1016/j.mce.2016.01.008. Epub 2016 Jan 9.


A novel bi-level meta-analysis approach: applied to biological pathway analysis.

Nguyen T, Tagett R, Donato M, Mitrea C, Draghici S.

Bioinformatics. 2016 Feb 1;32(3):409-16. doi: 10.1093/bioinformatics/btv588. Epub 2015 Oct 14.


Gene-expression Profiling in Non-small Cell Lung Cancer with Invasion of Mediastinal Lymph Nodes for Prognosis Evaluation.

Grigoroiu M, Tagett R, Draghici S, Dima S, Nastase A, Florea R, Sorop A, Ilie V, Bacalbasa N, Tica V, Laszlo V, Mansuet-Lupo A, Damotte D, Klepetko W, Popescu I, Regnard JF.

Cancer Genomics Proteomics. 2015 Sep-Oct;12(5):231-42.


Intelligent Informatics in Translational Medicine.

Chang HT, Akutsu T, Draghici S, Ray O, Pai TW.

Biomed Res Int. 2015;2015:717210. doi: 10.1155/2015/717210. Epub 2015 May 6. No abstract available.


Modeling time-dependent transcription effects of HER2 oncogene and discovery of a role for E2F2 in breast cancer cell-matrix adhesion.

Bollig-Fischer A, Marchetti L, Mitrea C, Wu J, Kruger A, Manca V, Drăghici S.

Bioinformatics. 2014 Nov 1;30(21):3036-43. doi: 10.1093/bioinformatics/btu400. Epub 2014 Jul 15.


Increased interaction with insulin receptor substrate 1, a novel abnormality in insulin resistance and type 2 diabetes.

Caruso M, Ma D, Msallaty Z, Lewis M, Seyoum B, Al-janabi W, Diamond M, Abou-Samra AB, Højlund K, Tagett R, Draghici S, Zhang X, Horowitz JF, Yi Z.

Diabetes. 2014 Jun;63(6):1933-47. doi: 10.2337/db13-1872. Epub 2014 Feb 28.


Serum prognostic biomarkers in head and neck cancer patients.

Lin HS, Siddiq F, Talwar HS, Chen W, Voichita C, Draghici S, Jeyapalan G, Chatterjee M, Fribley A, Yoo GH, Sethi S, Kim H, Sukari A, Folbe AJ, Tainsky MA.

Laryngoscope. 2014 Aug;124(8):1819-26. doi: 10.1002/lary.24567. Epub 2014 Jan 29.


The peripheral whole-blood transcriptome of acute pyelonephritis in human pregnancya.

Madan I, Than NG, Romero R, Chaemsaithong P, Miranda J, Tarca AL, Bhatti G, Draghici S, Yeo L, Mazor M, Hassan SS, Chaiworapongsa T.

J Perinat Med. 2014 Jan;42(1):31-53. doi: 10.1515/jpm-2013-0085.


Methods and approaches in the topology-based analysis of biological pathways.

Mitrea C, Taghavi Z, Bokanizad B, Hanoudi S, Tagett R, Donato M, Voichiţa C, Drăghici S.

Front Physiol. 2013 Oct 10;4:278. doi: 10.3389/fphys.2013.00278. Review.


Analysis and correction of crosstalk effects in pathway analysis.

Donato M, Xu Z, Tomoiaga A, Granneman JG, Mackenzie RG, Bao R, Than NG, Westfall PH, Romero R, Draghici S.

Genome Res. 2013 Nov;23(11):1885-93. doi: 10.1101/gr.153551.112. Epub 2013 Aug 9.


Distilled single-cell genome sequencing and de novo assembly for sparse microbial communities.

Taghavi Z, Movahedi NS, Draghici S, Chitsaz H.

Bioinformatics. 2013 Oct 1;29(19):2395-401. doi: 10.1093/bioinformatics/btt420. Epub 2013 Aug 5.


Characterization of the myometrial transcriptome in women with an arrest of dilatation during labor.

Chaemsaithong P, Madan I, Romero R, Than NG, Tarca AL, Draghici S, Bhatti G, Yeo L, Mazor M, Kim CJ, Hassan SS, Chaiworapongsa T.

J Perinat Med. 2013 Nov;41(6):665-81. doi: 10.1515/jpm-2013-0086.


[Poppers-associated maculopathy].

Pahlitzsch M, Draghici S, Mehrinfar BM.

Klin Monbl Augenheilkd. 2013 Jul;230(7):727-32. doi: 10.1055/s-0032-1328693. Epub 2013 Jul 22. German. Erratum in: Klin Monbl Augenheilkd. 2013 Jul;230(7):e19. Merinfhar, B M [corrected to Mehrinfar, B M].


Assessing co-regulation of directly linked genes in biological networks using microarray time series analysis.

Del Sorbo MR, Balzano W, Donato M, Draghici S.

Biosystems. 2013 Nov;114(2):149-54. doi: 10.1016/j.biosystems.2013.07.006. Epub 2013 Jul 20.


Differences and similarities in the transcriptional profile of peripheral whole blood in early and late-onset preeclampsia: insights into the molecular basis of the phenotype of preeclampsiaa.

Chaiworapongsa T, Romero R, Whitten A, Tarca AL, Bhatti G, Draghici S, Chaemsaithong P, Miranda J, Hassan SS.

J Perinat Med. 2013 Sep 1;41(5):485-504. doi: 10.1515/jpm-2013-0082.


Intelligent informatics in biomedicine.

Chang HT, Calogero RA, Draghici S, Ray O, Pai TW.

Biomed Res Int. 2013;2013:185839. doi: 10.1155/2013/185839. Epub 2013 Apr 22. No abstract available.


Identification of novel type 2 diabetes candidate genes involved in the crosstalk between the mitochondrial and the insulin signaling systems.

Mercader JM, Puiggros M, Segrè AV, Planet E, Sorianello E, Sebastian D, Rodriguez-Cuenca S, Ribas V, Bonàs-Guarch S, Draghici S, Yang C, Mora S, Vidal-Puig A, Dupuis J; DIAGRAM Consortium, Florez JC; MITIN Consortium, Zorzano A, Torrents D.

PLoS Genet. 2012;8(12):e1003046. doi: 10.1371/journal.pgen.1003046. Epub 2012 Dec 6.


Tips and traps in neurological imaging: imaging the perimedullary spaces.

Dietemann JL, Bogorin A, Abu Eid M, Sanda R, Mourao Soares I, Draghici S, Rotaru N, Koob M.

Diagn Interv Imaging. 2012 Dec;93(12):985-92. doi: 10.1016/j.diii.2012.08.005. Epub 2012 Nov 17.

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