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Results: 1 to 20 of 48

1.

Gene signatures ESC, MYC and ERG-fusion are early markers of a potentially dangerous subtype of prostate cancer.

Rye MB, Bertilsson H, Drabløs F, Angelsen A, Bathen TF, Tessem MB.

BMC Med Genomics. 2014 Aug 12;7(1):50. [Epub ahead of print]

PMID:
25115192
[PubMed - as supplied by publisher]
Free Article
2.

Enhanced efficacy of bleomycin in bladder cancer cells by photochemical internalization.

Baglo Y, Hagen L, Høgset A, Drabløs F, Otterlei M, Gederaas OA.

Biomed Res Int. 2014;2014:921296. doi: 10.1155/2014/921296. Epub 2014 Jun 30.

PMID:
25101299
[PubMed - in process]
Free PMC Article
3.

The eGenVar data management system--cataloguing and sharing sensitive data and metadata for the life sciences.

Razick S, Močnik R, Thomas LF, Ryeng E, Drabløs F, Sætrom P.

Database (Oxford). 2014 Mar 28;2014:bau027. doi: 10.1093/database/bau027. Print 2014.

PMID:
24682735
[PubMed - in process]
Free PMC Article
4.

Chromatin states reveal functional associations for globally defined transcription start sites in four human cell lines.

Rye M, Sandve GK, Daub CO, Kawaji H, Carninci P, Forrest AR, Drabløs F; FANTOM consortium.

BMC Genomics. 2014 Mar 26;15:120. doi: 10.1186/1471-2164-15-120.

PMID:
24669905
[PubMed - in process]
Free PMC Article
5.

Safety in numbers: multiple occurrences of highly similar homologs among Azotobacter vinelandii carbohydrate metabolism proteins probably confer adaptive benefits.

Mærk M, Johansen J, Ertesvåg H, Drabløs F, Valla S.

BMC Genomics. 2014 Mar 14;15:192. doi: 10.1186/1471-2164-15-192.

PMID:
24625193
[PubMed - in process]
Free PMC Article
6.

Vitamin D receptor ChIP-seq in primary CD4+ cells: relationship to serum 25-hydroxyvitamin D levels and autoimmune disease.

Handel AE, Sandve GK, Disanto G, Berlanga-Taylor AJ, Gallone G, Hanwell H, Drabløs F, Giovannoni G, Ebers GC, Ramagopalan SV.

BMC Med. 2013 Jul 12;11:163. doi: 10.1186/1741-7015-11-163.

PMID:
23849224
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

The microbial communities in two apparently physically separated deep subsurface oil reservoirs show extensive DNA sequence similarities.

Lewin A, Johansen J, Wentzel A, Kotlar HK, Drabløs F, Valla S.

Environ Microbiol. 2014 Feb;16(2):545-58. doi: 10.1111/1462-2920.12181. Epub 2013 Jul 4.

PMID:
23827055
[PubMed - indexed for MEDLINE]
8.

The Genomic HyperBrowser: an analysis web server for genome-scale data.

Sandve GK, Gundersen S, Johansen M, Glad IK, Gunathasan K, Holden L, Holden M, Liestøl K, Nygård S, Nygaard V, Paulsen J, Rydbeck H, Trengereid K, Clancy T, Drabløs F, Ferkingstad E, Kalas M, Lien T, Rye MB, Frigessi A, Hovig E.

Nucleic Acids Res. 2013 Jul;41(Web Server issue):W133-41. doi: 10.1093/nar/gkt342. Epub 2013 Apr 30.

PMID:
23632163
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Transcription profiling during the cell cycle shows that a subset of Polycomb-targeted genes is upregulated during DNA replication.

Peña-Diaz J, Hegre SA, Anderssen E, Aas PA, Mjelle R, Gilfillan GD, Lyle R, Drabløs F, Krokan HE, Sætrom P.

Nucleic Acids Res. 2013 Mar 1;41(5):2846-56. doi: 10.1093/nar/gks1336. Epub 2013 Jan 15.

PMID:
23325852
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

MotifLab: a tools and data integration workbench for motif discovery and regulatory sequence analysis.

Klepper K, Drabløs F.

BMC Bioinformatics. 2013 Jan 16;14:9. doi: 10.1186/1471-2105-14-9.

PMID:
23323883
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Cell-type specificity of ChIP-predicted transcription factor binding sites.

Håndstad T, Rye M, Močnik R, Drabløs F, Sætrom P.

BMC Genomics. 2012 Aug 3;13:372. doi: 10.1186/1471-2164-13-372.

PMID:
22863112
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

The Triform algorithm: improved sensitivity and specificity in ChIP-Seq peak finding.

Kornacker K, Rye MB, Håndstad T, Drabløs F.

BMC Bioinformatics. 2012 Jul 24;13:176. doi: 10.1186/1471-2105-13-176.

PMID:
22827163
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

High coverage sequencing of DNA from microorganisms living in an oil reservoir 2.5 kilometres subsurface.

Kotlar HK, Lewin A, Johansen J, Throne-Holst M, Haverkamp T, Markussen S, Winnberg A, Ringrose P, Aakvik T, Ryeng E, Jakobsen K, Drabløs F, Valla S.

Environ Microbiol Rep. 2011 Dec;3(6):674-81. doi: 10.1111/j.1758-2229.2011.00279.x. Epub 2011 Sep 14.

PMID:
23761356
[PubMed]
14.

Clustered ChIP-Seq-defined transcription factor binding sites and histone modifications map distinct classes of regulatory elements.

Rye M, Sætrom P, Håndstad T, Drabløs F.

BMC Biol. 2011 Nov 24;9:80. doi: 10.1186/1741-7007-9-80.

PMID:
22115494
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

The differential disease regulome.

Sandve GK, Gundersen S, Rydbeck H, Glad IK, Holden L, Holden M, Liestøl K, Clancy T, Drabløs F, Ferkingstad E, Johansen M, Nygaard V, Tøstesen E, Frigessi A, Hovig E.

BMC Genomics. 2011 Jul 7;12:353. doi: 10.1186/1471-2164-12-353.

PMID:
21736759
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

A ChIP-Seq benchmark shows that sequence conservation mainly improves detection of strong transcription factor binding sites.

Håndstad T, Rye MB, Drabløs F, Sætrom P.

PLoS One. 2011 Apr 14;6(4):e18430. doi: 10.1371/journal.pone.0018430.

PMID:
21533218
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Directed evolution of the transcription factor XylS for development of improved expression systems.

Vee Aune TE, Bakke I, Drabløs F, Lale R, Brautaset T, Valla S.

Microb Biotechnol. 2010 Jan;3(1):38-47. doi: 10.1111/j.1751-7915.2009.00126.x. Epub 2009 Jun 3.

PMID:
21255304
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

A manually curated ChIP-seq benchmark demonstrates room for improvement in current peak-finder programs.

Rye MB, Sætrom P, Drabløs F.

Nucleic Acids Res. 2011 Mar;39(4):e25. doi: 10.1093/nar/gkq1187. Epub 2010 Nov 26.

PMID:
21113027
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Gene duplications in prokaryotes can be associated with environmental adaptation.

Bratlie MS, Johansen J, Sherman BT, Huang da W, Lempicki RA, Drabløs F.

BMC Genomics. 2010 Oct 20;11:588. doi: 10.1186/1471-2164-11-588.

PMID:
20961426
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Isolation of mutant alginate lyases with cleavage specificity for di-guluronic acid linkages.

Tøndervik A, Klinkenberg G, Aarstad OA, Drabløs F, Ertesvåg H, Ellingsen TE, Skjåk-Bræk G, Valla S, Sletta H.

J Biol Chem. 2010 Nov 12;285(46):35284-92. doi: 10.1074/jbc.M110.162800. Epub 2010 Sep 7.

PMID:
20826807
[PubMed - indexed for MEDLINE]
Free PMC Article

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