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XbmR, a new transcription factor involved in the regulation of chemotaxis, biofilm formation and virulence in Xanthomonas citri subsp. citri.

Yaryura PM, Conforte VP, Malamud F, Roeschlin R, de Pino V, Castagnaro AP, McCarthy Y, Dow JM, Marano MR, Vojnov AA.

Environ Microbiol. 2014 Oct 24. doi: 10.1111/1462-2920.12684. [Epub ahead of print]


Novel cyclic di-GMP effectors of the YajQ protein family control bacterial virulence.

An SQ, Caly DL, McCarthy Y, Murdoch SL, Ward J, Febrer M, Dow JM, Ryan RP.

PLoS Pathog. 2014 Oct 16;10(10):e1004429. doi: 10.1371/journal.ppat.1004429. eCollection 2014 Oct.


Targeting cyclic di-GMP signalling: a strategy to control biofilm formation?

Caly DL, Bellini D, Walsh MA, Dow JM, Ryan RP.

Curr Pharm Des. 2015;21(1):12-24.


The PAS domain-containing histidine kinase RpfS is a second sensor for the diffusible signal factor of Xanthomonas campestris.

An SQ, Allan JH, McCarthy Y, Febrer M, Dow JM, Ryan RP.

Mol Microbiol. 2014 May;92(3):586-97. doi: 10.1111/mmi.12577. Epub 2014 Apr 2.


Microbiota and metabolite profiling reveal specific alterations in bacterial community structure and environment in the cystic fibrosis airway during exacerbation.

Twomey KB, Alston M, An SQ, O'Connell OJ, McCarthy Y, Swarbreck D, Febrer M, Dow JM, Plant BJ, Ryan RP.

PLoS One. 2013 Dec 17;8(12):e82432. doi: 10.1371/journal.pone.0082432. eCollection 2013.


Characterization of a periplasmic nitrate reductase in complex with its biosynthetic chaperone.

Dow JM, Grahl S, Ward R, Evans R, Byron O, Norman DG, Palmer T, Sargent F.

FEBS J. 2014 Jan;281(1):246-60. doi: 10.1111/febs.12592. Epub 2013 Dec 9.


Crystal structure of an HD-GYP domain cyclic-di-GMP phosphodiesterase reveals an enzyme with a novel trinuclear catalytic iron centre.

Bellini D, Caly DL, McCarthy Y, Bumann M, An SQ, Dow JM, Ryan RP, Walsh MA.

Mol Microbiol. 2014 Jan;91(1):26-38. doi: 10.1111/mmi.12447. Epub 2013 Nov 24.


Proteomics analysis of the regulatory role of Rpf/DSF cell-to-cell signaling system in the virulence of Xanthomonas campestris.

O'Connell A, An SQ, McCarthy Y, Schulte F, Niehaus K, He YQ, Tang JL, Ryan RP, Dow JM.

Mol Plant Microbe Interact. 2013 Oct;26(10):1131-7. doi: 10.1094/MPMI-05-13-0155-R.


High-resolution transcriptional analysis of the regulatory influence of cell-to-cell signalling reveals novel genes that contribute to Xanthomonas phytopathogenesis.

An SQ, Febrer M, McCarthy Y, Tang DJ, Clissold L, Kaithakottil G, Swarbreck D, Tang JL, Rogers J, Dow JM, Ryan RP.

Mol Microbiol. 2013 Jun;88(6):1058-69. doi: 10.1111/mmi.12229. Epub 2013 Apr 26.


The HD-GYP domain protein RpfG of Xanthomonas oryzae pv. oryzicola regulates synthesis of extracellular polysaccharides that contribute to biofilm formation and virulence on rice.

Zhang Y, Wei C, Jiang W, Wang L, Li C, Wang Y, Dow JM, Sun W.

PLoS One. 2013;8(3):e59428. doi: 10.1371/journal.pone.0059428. Epub 2013 Mar 27.


The RpfCG two-component system negatively regulates the colonization of sugar cane stalks by Xanthomonas albilineans.

Rott P, Fleites LA, Mensi I, Sheppard L, Daugrois JH, Dow JM, Gabriel DW.

Microbiology. 2013 Jun;159(Pt 6):1149-59. doi: 10.1099/mic.0.065748-0. Epub 2013 Mar 28.


Characterization of a pre-export enzyme-chaperone complex on the twin-arginine transport pathway.

Dow JM, Gabel F, Sargent F, Palmer T.

Biochem J. 2013 May 15;452(1):57-66. doi: 10.1042/BJ20121832.


RsmA regulates biofilm formation in Xanthomonas campestris through a regulatory network involving cyclic di-GMP and the Clp transcription factor.

Lu XH, An SQ, Tang DJ, McCarthy Y, Tang JL, Dow JM, Ryan RP.

PLoS One. 2012;7(12):e52646. doi: 10.1371/journal.pone.0052646. Epub 2012 Dec 21.


Dynamic complex formation between HD-GYP, GGDEF and PilZ domain proteins regulates motility in Xanthomonas campestris.

Ryan RP, McCarthy Y, Kiely PA, O'Connor R, Farah CS, Armitage JP, Dow JM.

Mol Microbiol. 2012 Nov;86(3):557-67. doi: 10.1111/mmi.12000. Epub 2012 Aug 31.


An orphan chemotaxis sensor regulates virulence and antibiotic tolerance in the human pathogen Pseudomonas aeruginosa.

McLaughlin HP, Caly DL, McCarthy Y, Ryan RP, Dow JM.

PLoS One. 2012;7(8):e42205. doi: 10.1371/journal.pone.0042205. Epub 2012 Aug 1.


When the PilZ don't work: effectors for cyclic di-GMP action in bacteria.

Ryan RP, Tolker-Nielsen T, Dow JM.

Trends Microbiol. 2012 May;20(5):235-42. doi: 10.1016/j.tim.2012.02.008. Epub 2012 Mar 21. Review.


Bacterial cis-2-unsaturated fatty acids found in the cystic fibrosis airway modulate virulence and persistence of Pseudomonas aeruginosa.

Twomey KB, O'Connell OJ, McCarthy Y, Dow JM, O'Toole GA, Plant BJ, Ryan RP.

ISME J. 2012 May;6(5):939-50. doi: 10.1038/ismej.2011.167. Epub 2011 Dec 1.


The Ax21 protein is a cell-cell signal that regulates virulence in the nosocomial pathogen Stenotrophomonas maltophilia.

McCarthy Y, Dow JM, Ryan RP.

J Bacteriol. 2011 Nov;193(22):6375-8. doi: 10.1128/JB.05949-11. Epub 2011 Sep 9.


The CRP/FNR family protein Bcam1349 is a c-di-GMP effector that regulates biofilm formation in the respiratory pathogen Burkholderia cenocepacia.

Fazli M, O'Connell A, Nilsson M, Niehaus K, Dow JM, Givskov M, Ryan RP, Tolker-Nielsen T.

Mol Microbiol. 2011 Oct;82(2):327-41. doi: 10.1111/j.1365-2958.2011.07814.x. Epub 2011 Sep 7.


Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp.

Bogdanove AJ, Koebnik R, Lu H, Furutani A, Angiuoli SV, Patil PB, Van Sluys MA, Ryan RP, Meyer DF, Han SW, Aparna G, Rajaram M, Delcher AL, Phillippy AM, Puiu D, Schatz MC, Shumway M, Sommer DD, Trapnell C, Benahmed F, Dimitrov G, Madupu R, Radune D, Sullivan S, Jha G, Ishihara H, Lee SW, Pandey A, Sharma V, Sriariyanun M, Szurek B, Vera-Cruz CM, Dorman KS, Ronald PC, Verdier V, Dow JM, Sonti RV, Tsuge S, Brendel VP, Rabinowicz PD, Leach JE, White FF, Salzberg SL.

J Bacteriol. 2011 Oct;193(19):5450-64. doi: 10.1128/JB.05262-11. Epub 2011 Jul 22.

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