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Results: 1 to 20 of 137

1.

MCMC implementation of the optimal Bayesian classifier for non-Gaussian models: model-based RNA-Seq classification.

Knight JM, Ivanov I, Dougherty ER.

BMC Bioinformatics. 2014 Dec 10;15(1):401. doi: 10.1186/s12859-014-0401-3.

2.

Cross-validation under separate sampling: strong bias and how to correct it.

Braga-Neto UM, Zollanvari A, Dougherty ER.

Bioinformatics. 2014 Dec 1;30(23):3349-55. doi: 10.1093/bioinformatics/btu527. Epub 2014 Aug 13.

PMID:
25123902
3.

Learning restricted Boolean network model by time-series data.

Ouyang H, Fang J, Shen L, Dougherty ER, Liu W.

EURASIP J Bioinform Syst Biol. 2014;2014(1):10. doi: 10.1186/s13637-014-0010-5. Epub 2014 Jul 15.

4.

Moments and Root-Mean-Square Error of the Bayesian MMSE Estimator of Classification Error in the Gaussian Model.

Zollanvari A, Dougherty ER.

Pattern Recognit. 2014 Jun 1;47(6):2178-2192.

PMID:
24729636
5.

A comparison study of optimal and suboptimal intervention policies for gene regulatory networks in the presence of uncertainty.

Yousefi MR, Dougherty ER.

EURASIP J Bioinform Syst Biol. 2014 Apr 3;2014(1):6. doi: 10.1186/1687-4153-2014-6.

6.

Evaluating gene set enrichment analysis via a hybrid data model.

Hua J, Bittner ML, Dougherty ER.

Cancer Inform. 2014 Feb 12;13(Suppl 1):1-16. doi: 10.4137/CIN.S13305. eCollection 2014.

7.

Validation of gene regulatory network inference based on controllability.

Qian X, Dougherty ER.

Front Genet. 2013 Dec 12;4:272. doi: 10.3389/fgene.2013.00272. eCollection 2013.

8.

Effect of separate sampling on classification accuracy.

Shahrokh Esfahani M, Dougherty ER.

Bioinformatics. 2014 Jan 15;30(2):242-50. doi: 10.1093/bioinformatics/btt662. Epub 2013 Nov 20.

9.

On the impoverishment of scientific education.

Dougherty ER.

EURASIP J Bioinform Syst Biol. 2013 Nov 11;2013(1):15. doi: 10.1186/1687-4153-2013-15.

10.

Modeling the next generation sequencing sample processing pipeline for the purposes of classification.

Ghaffari N, Yousefi MR, Johnson CD, Ivanov I, Dougherty ER.

BMC Bioinformatics. 2013 Oct 11;14:307. doi: 10.1186/1471-2105-14-307.

11.

Analytical Study of Performance of Linear Discriminant Analysis in Stochastic Settings.

Zollanvari A, Hua J, Dougherty ER.

Pattern Recognit. 2013 Nov;46(11):3017-3029.

12.

Scientific knowledge is possible with small-sample classification.

Dougherty ER, Dalton LA.

EURASIP J Bioinform Syst Biol. 2013 Aug 20;2013(1):10. doi: 10.1186/1687-4153-2013-10.

13.

Estimating conditional probabilities for the detection of unfavorable copy number alterations in a targeted therapy.

Hsu FH, Dougherty ER, Chen Y, Serpedin E.

IEEE Trans Biomed Eng. 2013 Oct;60(10):2933-42. doi: 10.1109/TBME.2013.2266356. Epub 2013 Jun 5.

PMID:
23744663
14.

On the limitations of biological knowledge.

Dougherty ER, Shmulevich I.

Curr Genomics. 2012 Nov;13(7):574-87. doi: 10.2174/138920212803251445.

15.

Intervention in gene regulatory networks with maximal phenotype alteration.

Yousefi MR, Dougherty ER.

Bioinformatics. 2013 Jul 15;29(14):1758-67. doi: 10.1093/bioinformatics/btt242. Epub 2013 Apr 29.

16.

Spectral analysis on time-course expression data: detecting periodic genes using a real-valued iterative adaptive approach.

Agyepong KS, Hsu FH, Dougherty ER, Serpedin E.

Adv Bioinformatics. 2013;2013:171530. doi: 10.1155/2013/171530. Epub 2013 Feb 28.

17.

Reducing confounding and suppression effects in TCGA data: an integrated analysis of chemotherapy response in ovarian cancer.

Hsu FH, Serpedin E, Hsiao TH, Bishop AJ, Dougherty ER, Chen Y.

BMC Genomics. 2012;13 Suppl 6:S13. doi: 10.1186/1471-2164-13-S6-S13. Epub 2012 Oct 26.

18.

Dynamical modeling of drug effect using hybrid systems.

Li X, Qian L, Dougherty ER.

EURASIP J Bioinform Syst Biol. 2012 Dec 26;2012(1):19. doi: 10.1186/1687-4153-2012-19.

19.

Fuzzy intervention in biological phenomena.

Nounou HN, Nounou MN, Meskin N, Datta A, Dougherty ER.

IEEE/ACM Trans Comput Biol Bioinform. 2012 Nov-Dec;9(6):1819-25. doi: 10.1109/TCBB.2012.113.

PMID:
23221089
20.

Newton, laplace, and the epistemology of systems biology.

Bittner ML, Dougherty ER.

Cancer Inform. 2012;11:185-90. doi: 10.4137/CIN.S10630. Epub 2012 Oct 30.

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