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Results: 1 to 20 of 37

1.

Classifying leukemia types with chromatin conformation data.

Rousseau M, Ferraiuolo MA, Crutchley JL, Wang XQ, Miura H, Blanchette M, Dostie J.

Genome Biol. 2014 Apr 30;15(4):R60. doi: 10.1186/gb-2014-15-4-r60.

PMID:
24995990
[PubMed - in process]
Free PMC Article
2.

Clustering of tissue-specific sub-TADs accompanies the regulation of HoxA genes in developing limbs.

Berlivet S, Paquette D, Dumouchel A, Langlais D, Dostie J, Kmita M.

PLoS Genet. 2013 Dec;9(12):e1004018. doi: 10.1371/journal.pgen.1004018. Epub 2013 Dec 26.

PMID:
24385922
[PubMed - in process]
Free PMC Article
3.

Repurposing CRISPR/Cas9 for in situ functional assays.

Malina A, Mills JR, Cencic R, Yan Y, Fraser J, Schippers LM, Paquet M, Dostie J, Pelletier J.

Genes Dev. 2013 Dec 1;27(23):2602-14. doi: 10.1101/gad.227132.113.

PMID:
24298059
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Hox in motion: tracking HoxA cluster conformation during differentiation.

Rousseau M, Crutchley JL, Miura H, Suderman M, Blanchette M, Dostie J.

Nucleic Acids Res. 2014 Feb;42(3):1524-40. doi: 10.1093/nar/gkt998. Epub 2013 Oct 29.

PMID:
24174538
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

A polymer model explains the complexity of large-scale chromatin folding.

Barbieri M, Fraser J, Lavitas LM, Chotalia M, Dostie J, Pombo A, Nicodemi M.

Nucleus. 2013 Jul-Aug;4(4):267-73. doi: 10.4161/nucl.25432. Epub 2013 Jun 19.

PMID:
23823730
[PubMed - in process]
Free PMC Article
6.

A model of the large-scale organization of chromatin.

Barbieri M, Chotalia M, Fraser J, Lavitas LM, Dostie J, Pombo A, Nicodemi M.

Biochem Soc Trans. 2013 Apr;41(2):508-12. doi: 10.1042/BST20120238. Review.

PMID:
23514144
[PubMed - indexed for MEDLINE]
7.

From cells to chromatin: capturing snapshots of genome organization with 5C technology.

Ferraiuolo MA, Sanyal A, Naumova N, Dekker J, Dostie J.

Methods. 2012 Nov;58(3):255-67. doi: 10.1016/j.ymeth.2012.10.011. Epub 2012 Nov 5.

PMID:
23137922
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Complexity of chromatin folding is captured by the strings and binders switch model.

Barbieri M, Chotalia M, Fraser J, Lavitas LM, Dostie J, Pombo A, Nicodemi M.

Proc Natl Acad Sci U S A. 2012 Oct 2;109(40):16173-8. doi: 10.1073/pnas.1204799109. Epub 2012 Sep 17.

PMID:
22988072
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

A Torrent of data: mapping chromatin organization using 5C and high-throughput sequencing.

Fraser J, Ethier SD, Miura H, Dostie J.

Methods Enzymol. 2012;513:113-41. doi: 10.1016/B978-0-12-391938-0.00005-7.

PMID:
22929767
[PubMed - indexed for MEDLINE]
10.

Chromosome organization in the nucleus - charting new territory across the Hi-Cs.

Dostie J, Bickmore WA.

Curr Opin Genet Dev. 2012 Apr;22(2):125-31. doi: 10.1016/j.gde.2011.12.006. Epub 2012 Jan 19. Review.

PMID:
22265226
[PubMed - indexed for MEDLINE]
11.

p53 inhibits angiogenesis by inducing the production of Arresten.

Assadian S, El-Assaad W, Wang XQ, Gannon PO, Barrès V, Latour M, Mes-Masson AM, Saad F, Sado Y, Dostie J, Teodoro JG.

Cancer Res. 2012 Mar 1;72(5):1270-9. doi: 10.1158/0008-5472.CAN-11-2348. Epub 2012 Jan 17.

PMID:
22253229
[PubMed - indexed for MEDLINE]
Free Article
12.

Discovering genome regulation with 3C and 3C-related technologies.

Ethier SD, Miura H, Dostie J.

Biochim Biophys Acta. 2012 May;1819(5):401-10. doi: 10.1016/j.bbagrm.2011.12.004. Epub 2011 Dec 20. Review.

PMID:
22207201
[PubMed - indexed for MEDLINE]
Free Article
13.

Three-dimensional modeling of chromatin structure from interaction frequency data using Markov chain Monte Carlo sampling.

Rousseau M, Fraser J, Ferraiuolo MA, Dostie J, Blanchette M.

BMC Bioinformatics. 2011 Oct 25;12:414. doi: 10.1186/1471-2105-12-414.

PMID:
22026390
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Shaping the Genome with Non-Coding RNAs.

Wang XQ, Crutchley JL, Dostie J.

Curr Genomics. 2011 Aug;12(5):307-21. doi: 10.2174/138920211796429772.

PMID:
21874119
[PubMed]
Free PMC Article
15.

Computing chromosome conformation.

Fraser J, Rousseau M, Blanchette M, Dostie J.

Methods Mol Biol. 2010;674:251-68. doi: 10.1007/978-1-60761-854-6_16.

PMID:
20827597
[PubMed - indexed for MEDLINE]
16.

Chromatin conformation signatures: ideal human disease biomarkers?

Crutchley JL, Wang XQ, Ferraiuolo MA, Dostie J.

Biomark Med. 2010 Aug;4(4):611-29. doi: 10.2217/bmm.10.68. Review.

PMID:
20701449
[PubMed - indexed for MEDLINE]
Free Article
17.

The three-dimensional architecture of Hox cluster silencing.

Ferraiuolo MA, Rousseau M, Miyamoto C, Shenker S, Wang XQ, Nadler M, Blanchette M, Dostie J.

Nucleic Acids Res. 2010 Nov;38(21):7472-84. doi: 10.1093/nar/gkq644. Epub 2010 Jul 25.

PMID:
20660483
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Disease-causing 7.4 kb cis-regulatory deletion disrupting conserved non-coding sequences and their interaction with the FOXL2 promotor: implications for mutation screening.

D'haene B, Attanasio C, Beysen D, Dostie J, Lemire E, Bouchard P, Field M, Jones K, Lorenz B, Menten B, Buysse K, Pattyn F, Friedli M, Ucla C, Rossier C, Wyss C, Speleman F, De Paepe A, Dekker J, Antonarakis SE, De Baere E.

PLoS Genet. 2009 Jun;5(6):e1000522. doi: 10.1371/journal.pgen.1000522. Epub 2009 Jun 19.

PMID:
19543368
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.

FANTOM Consortium, Suzuki H, Forrest AR, van Nimwegen E, Daub CO, Balwierz PJ, Irvine KM, Lassmann T, Ravasi T, Hasegawa Y, de Hoon MJ, Katayama S, Schroder K, Carninci P, Tomaru Y, Kanamori-Katayama M, Kubosaki A, Akalin A, Ando Y, Arner E, Asada M, Asahara H, Bailey T, Bajic VB, Bauer D, Beckhouse AG, Bertin N, Björkegren J, Brombacher F, Bulger E, Chalk AM, Chiba J, Cloonan N, Dawe A, Dostie J, Engström PG, Essack M, Faulkner GJ, Fink JL, Fredman D, Fujimori K, Furuno M, Gojobori T, Gough J, Grimmond SM, Gustafsson M, Hashimoto M, Hashimoto T, Hatakeyama M, Heinzel S, Hide W, Hofmann O, Hörnquist M, Huminiecki L, Ikeo K, Imamoto N, Inoue S, Inoue Y, Ishihara R, Iwayanagi T, Jacobsen A, Kaur M, Kawaji H, Kerr MC, Kimura R, Kimura S, Kimura Y, Kitano H, Koga H, Kojima T, Kondo S, Konno T, Krogh A, Kruger A, Kumar A, Lenhard B, Lennartsson A, Lindow M, Lizio M, Macpherson C, Maeda N, Maher CA, Maqungo M, Mar J, Matigian NA, Matsuda H, Mattick JS, Meier S, Miyamoto S, Miyamoto-Sato E, Nakabayashi K, Nakachi Y, Nakano M, Nygaard S, Okayama T, Okazaki Y, Okuda-Yabukami H, Orlando V, Otomo J, Pachkov M, Petrovsky N, Plessy C, Quackenbush J, Radovanovic A, Rehli M, Saito R, Sandelin A, Schmeier S, Schönbach C, Schwartz AS, Semple CA, Sera M, Severin J, Shirahige K, Simons C, St Laurent G, Suzuki M, Suzuki T, Sweet MJ, Taft RJ, Takeda S, Takenaka Y, Tan K, Taylor MS, Teasdale RD, Tegnér J, Teichmann S, Valen E, Wahlestedt C, Waki K, Waterhouse A, Wells CA, Winther O, Wu L, Yamaguchi K, Yanagawa H, Yasuda J, Zavolan M, Hume DA; Riken Omics Science Center, Arakawa T, Fukuda S, Imamura K, Kai C, Kaiho A, Kawashima T, Kawazu C, Kitazume Y, Kojima M, Miura H, Murakami K, Murata M, Ninomiya N, Nishiyori H, Noma S, Ogawa C, Sano T, Simon C, Tagami M, Takahashi Y, Kawai J, Hayashizaki Y.

Nat Genet. 2009 May;41(5):553-62. doi: 10.1038/ng.375. Epub 2009 Apr 19.

PMID:
19377474
[PubMed - indexed for MEDLINE]
20.

Chromatin conformation signatures of cellular differentiation.

Fraser J, Rousseau M, Shenker S, Ferraiuolo MA, Hayashizaki Y, Blanchette M, Dostie J.

Genome Biol. 2009;10(4):R37. doi: 10.1186/gb-2009-10-4-r37. Epub 2009 Apr 19.

PMID:
19374771
[PubMed - indexed for MEDLINE]
Free PMC Article

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