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Results: 1 to 20 of 212

1.

Phylogenomic Analysis and Predicted Physiological Role of the Proton-Translocating NADH:Quinone Oxidoreductase (Complex I) Across Bacteria.

Spero MA, Aylward FO, Currie CR, Donohue TJ.

MBio. 2015 Apr 14;6(2). pii: e00389-15. doi: 10.1128/mBio.00389-15.

2.

Oxygen-dependent regulation of bacterial lipid production.

Lemmer KC, Dohnalkova AC, Noguera DR, Donohue TJ.

J Bacteriol. 2015 May 1;197(9):1649-58. doi: 10.1128/JB.02510-14. Epub 2015 Mar 2.

3.

An integrated approach to reconstructing genome-scale transcriptional regulatory networks.

Imam S, Noguera DR, Donohue TJ.

PLoS Comput Biol. 2015 Feb 27;11(2):e1004103. doi: 10.1371/journal.pcbi.1004103. eCollection 2015 Feb.

4.

CceR and AkgR regulate central carbon and energy metabolism in alphaproteobacteria.

Imam S, Noguera DR, Donohue TJ.

MBio. 2015 Feb 3;6(1). pii: e02461-14. doi: 10.1128/mBio.02461-14.

5.

Global analysis of photosynthesis transcriptional regulatory networks.

Imam S, Noguera DR, Donohue TJ.

PLoS Genet. 2014 Dec 11;10(12):e1004837. doi: 10.1371/journal.pgen.1004837. eCollection 2014 Dec.

6.

Quantifying the effects of light intensity on bioproduction and maintenance energy during photosynthetic growth of Rhodobacter sphaeroides.

Imam S, Fitzgerald CM, Cook EM, Donohue TJ, Noguera DR.

Photosynth Res. 2015 Feb;123(2):167-82. doi: 10.1007/s11120-014-0061-1. Epub 2014 Nov 27.

PMID:
25428581
7.

A group of sequence-related sphingomonad enzymes catalyzes cleavage of β-aryl ether linkages in lignin β-guaiacyl and β-syringyl ether dimers.

Gall DL, Ralph J, Donohue TJ, Noguera DR.

Environ Sci Technol. 2014 Oct 21;48(20):12454-63. doi: 10.1021/es503886d. Epub 2014 Oct 1.

8.

Development of a GC/Quadrupole-Orbitrap mass spectrometer, part I: design and characterization.

Peterson AC, Hauschild JP, Quarmby ST, Krumwiede D, Lange O, Lemke RA, Grosse-Coosmann F, Horning S, Donohue TJ, Westphall MS, Coon JJ, Griep-Raming J.

Anal Chem. 2014 Oct 21;86(20):10036-43. doi: 10.1021/ac5014767. Epub 2014 Sep 10.

PMID:
25208235
9.

Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains.

Kyrpides NC, Hugenholtz P, Eisen JA, Woyke T, Göker M, Parker CT, Amann R, Beck BJ, Chain PS, Chun J, Colwell RR, Danchin A, Dawyndt P, Dedeurwaerdere T, DeLong EF, Detter JC, De Vos P, Donohue TJ, Dong XZ, Ehrlich DS, Fraser C, Gibbs R, Gilbert J, Gilna P, Glöckner FO, Jansson JK, Keasling JD, Knight R, Labeda D, Lapidus A, Lee JS, Li WJ, Ma J, Markowitz V, Moore ER, Morrison M, Meyer F, Nelson KE, Ohkuma M, Ouzounis CA, Pace N, Parkhill J, Qin N, Rossello-Mora R, Sikorski J, Smith D, Sogin M, Stevens R, Stingl U, Suzuki K, Taylor D, Tiedje JM, Tindall B, Wagner M, Weinstock G, Weissenbach J, White O, Wang J, Zhang L, Zhou YG, Field D, Whitman WB, Garrity GM, Klenk HP.

PLoS Biol. 2014 Aug 5;12(8):e1001920. doi: 10.1371/journal.pbio.1001920. eCollection 2014 Aug.

10.

Synthesis and scavenging role of furan fatty acids.

Lemke RA, Peterson AC, Ziegelhoffer EC, Westphall MS, Tjellström H, Coon JJ, Donohue TJ.

Proc Natl Acad Sci U S A. 2014 Aug 19;111(33):E3450-7. doi: 10.1073/pnas.1405520111. Epub 2014 Aug 4.

11.

A Rhodobacter sphaeroides protein mechanistically similar to Escherichia coli DksA regulates photosynthetic growth.

Lennon CW, Lemmer KC, Irons JL, Sellman MI, Donohue TJ, Gourse RL, Ross W.

MBio. 2014 Apr 29;5(3):e01105-14. doi: 10.1128/mBio.01105-14.

12.

Prospective chest pain evaluation in the emergency department with use of high-sensitivity C-reactive protein (PROCEED-CRP study).

Ionescu CN, Chrissoheris MP, Slim HB, Slade M, Oen-Hsiao J, Donohue TJ, Bekui A, Ghantous AE.

Conn Med. 2014 Mar;78(3):133-8.

PMID:
24772828
13.

Stereochemical features of glutathione-dependent enzymes in the Sphingobium sp. strain SYK-6 β-aryl etherase pathway.

Gall DL, Kim H, Lu F, Donohue TJ, Noguera DR, Ralph J.

J Biol Chem. 2014 Mar 21;289(12):8656-67. doi: 10.1074/jbc.M113.536250. Epub 2014 Feb 7.

14.

Global insights into energetic and metabolic networks in Rhodobacter sphaeroides.

Imam S, Noguera DR, Donohue TJ.

BMC Syst Biol. 2013 Sep 13;7:89. doi: 10.1186/1752-0509-7-89.

15.

Psychosocial and cardiac outcomes of yoga for ICD patients: a randomized clinical control trial.

Toise SC, Sears SF, Schoenfeld MH, Blitzer ML, Marieb MA, Drury JH, Slade MD, Donohue TJ.

Pacing Clin Electrophysiol. 2014 Jan;37(1):48-62. doi: 10.1111/pace.12252. Epub 2013 Aug 26.

PMID:
23981048
16.

Benzoyl coenzyme a pathway-mediated metabolism of meta-hydroxy-aromatic acids in Rhodopseudomonas palustris.

Gall DL, Ralph J, Donohue TJ, Noguera DR.

J Bacteriol. 2013 Sep;195(18):4112-20. doi: 10.1128/JB.00634-13. Epub 2013 Jul 12.

17.

Chemistry and combustion of fit-for-purpose biofuels.

Rothamer DA, Donohue TJ.

Curr Opin Chem Biol. 2013 Jun;17(3):522-8. doi: 10.1016/j.cbpa.2013.03.039. Epub 2013 May 8. Review.

PMID:
23664492
18.

Proteins needed to activate a transcriptional response to the reactive oxygen species singlet oxygen.

Nam TW, Ziegelhoffer EC, Lemke RA, Donohue TJ.

MBio. 2013 Jan 8;4(1):e00541-12. doi: 10.1128/mBio.00541-12.

19.

Revised sequence and annotation of the Rhodobacter sphaeroides 2.4.1 genome.

Kontur WS, Schackwitz WS, Ivanova N, Martin J, Labutti K, Deshpande S, Tice HN, Pennacchio C, Sodergren E, Weinstock GM, Noguera DR, Donohue TJ.

J Bacteriol. 2012 Dec;194(24):7016-7. doi: 10.1128/JB.01214-12.

20.

Signal correlations in ecological niches can shape the organization and evolution of bacterial gene regulatory networks.

Dufour YS, Donohue TJ.

Adv Microb Physiol. 2012;61:1-36. doi: 10.1016/B978-0-12-394423-8.00001-9. Review.

PMID:
23046950
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