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Results: 1 to 20 of 210

1.

An integrated approach to reconstructing genome-scale transcriptional regulatory networks.

Imam S, Noguera DR, Donohue TJ.

PLoS Comput Biol. 2015 Feb 27;11(2):e1004103. doi: 10.1371/journal.pcbi.1004103. eCollection 2015 Feb.

PMID:
25723545
[PubMed - in process]
Free Article
2.

CceR and AkgR regulate central carbon and energy metabolism in alphaproteobacteria.

Imam S, Noguera DR, Donohue TJ.

MBio. 2015 Feb 3;6(1). pii: e02461-14. doi: 10.1128/mBio.02461-14.

PMID:
25650399
[PubMed - in process]
Free PMC Article
3.

Global analysis of photosynthesis transcriptional regulatory networks.

Imam S, Noguera DR, Donohue TJ.

PLoS Genet. 2014 Dec 11;10(12):e1004837. doi: 10.1371/journal.pgen.1004837. eCollection 2014 Dec.

PMID:
25503406
[PubMed - in process]
Free PMC Article
4.

Quantifying the effects of light intensity on bioproduction and maintenance energy during photosynthetic growth of Rhodobacter sphaeroides.

Imam S, Fitzgerald CM, Cook EM, Donohue TJ, Noguera DR.

Photosynth Res. 2015 Feb;123(2):167-82. doi: 10.1007/s11120-014-0061-1. Epub 2014 Nov 27.

PMID:
25428581
[PubMed - in process]
5.

A group of sequence-related sphingomonad enzymes catalyzes cleavage of β-aryl ether linkages in lignin β-guaiacyl and β-syringyl ether dimers.

Gall DL, Ralph J, Donohue TJ, Noguera DR.

Environ Sci Technol. 2014 Oct 21;48(20):12454-63. doi: 10.1021/es503886d. Epub 2014 Oct 1.

PMID:
25232892
[PubMed - in process]
Free PMC Article
6.

Development of a GC/Quadrupole-Orbitrap mass spectrometer, part I: design and characterization.

Peterson AC, Hauschild JP, Quarmby ST, Krumwiede D, Lange O, Lemke RA, Grosse-Coosmann F, Horning S, Donohue TJ, Westphall MS, Coon JJ, Griep-Raming J.

Anal Chem. 2014 Oct 21;86(20):10036-43. doi: 10.1021/ac5014767. Epub 2014 Sep 10.

PMID:
25208235
[PubMed - in process]
7.

Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains.

Kyrpides NC, Hugenholtz P, Eisen JA, Woyke T, Göker M, Parker CT, Amann R, Beck BJ, Chain PS, Chun J, Colwell RR, Danchin A, Dawyndt P, Dedeurwaerdere T, DeLong EF, Detter JC, De Vos P, Donohue TJ, Dong XZ, Ehrlich DS, Fraser C, Gibbs R, Gilbert J, Gilna P, Glöckner FO, Jansson JK, Keasling JD, Knight R, Labeda D, Lapidus A, Lee JS, Li WJ, Ma J, Markowitz V, Moore ER, Morrison M, Meyer F, Nelson KE, Ohkuma M, Ouzounis CA, Pace N, Parkhill J, Qin N, Rossello-Mora R, Sikorski J, Smith D, Sogin M, Stevens R, Stingl U, Suzuki K, Taylor D, Tiedje JM, Tindall B, Wagner M, Weinstock G, Weissenbach J, White O, Wang J, Zhang L, Zhou YG, Field D, Whitman WB, Garrity GM, Klenk HP.

PLoS Biol. 2014 Aug 5;12(8):e1001920. doi: 10.1371/journal.pbio.1001920. eCollection 2014 Aug.

PMID:
25093819
[PubMed - in process]
Free PMC Article
8.

Synthesis and scavenging role of furan fatty acids.

Lemke RA, Peterson AC, Ziegelhoffer EC, Westphall MS, Tjellström H, Coon JJ, Donohue TJ.

Proc Natl Acad Sci U S A. 2014 Aug 19;111(33):E3450-7. doi: 10.1073/pnas.1405520111. Epub 2014 Aug 4.

PMID:
25092314
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

A Rhodobacter sphaeroides protein mechanistically similar to Escherichia coli DksA regulates photosynthetic growth.

Lennon CW, Lemmer KC, Irons JL, Sellman MI, Donohue TJ, Gourse RL, Ross W.

MBio. 2014 Apr 29;5(3):e01105-14. doi: 10.1128/mBio.01105-14.

PMID:
24781745
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Prospective chest pain evaluation in the emergency department with use of high-sensitivity C-reactive protein (PROCEED-CRP study).

Ionescu CN, Chrissoheris MP, Slim HB, Slade M, Oen-Hsiao J, Donohue TJ, Bekui A, Ghantous AE.

Conn Med. 2014 Mar;78(3):133-8.

PMID:
24772828
[PubMed - indexed for MEDLINE]
11.

Stereochemical features of glutathione-dependent enzymes in the Sphingobium sp. strain SYK-6 β-aryl etherase pathway.

Gall DL, Kim H, Lu F, Donohue TJ, Noguera DR, Ralph J.

J Biol Chem. 2014 Mar 21;289(12):8656-67. doi: 10.1074/jbc.M113.536250. Epub 2014 Feb 7.

PMID:
24509858
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Global insights into energetic and metabolic networks in Rhodobacter sphaeroides.

Imam S, Noguera DR, Donohue TJ.

BMC Syst Biol. 2013 Sep 13;7:89. doi: 10.1186/1752-0509-7-89.

PMID:
24034347
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Psychosocial and cardiac outcomes of yoga for ICD patients: a randomized clinical control trial.

Toise SC, Sears SF, Schoenfeld MH, Blitzer ML, Marieb MA, Drury JH, Slade MD, Donohue TJ.

Pacing Clin Electrophysiol. 2014 Jan;37(1):48-62. doi: 10.1111/pace.12252. Epub 2013 Aug 26.

PMID:
23981048
[PubMed - indexed for MEDLINE]
14.

Benzoyl coenzyme a pathway-mediated metabolism of meta-hydroxy-aromatic acids in Rhodopseudomonas palustris.

Gall DL, Ralph J, Donohue TJ, Noguera DR.

J Bacteriol. 2013 Sep;195(18):4112-20. doi: 10.1128/JB.00634-13. Epub 2013 Jul 12.

PMID:
23852864
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Chemistry and combustion of fit-for-purpose biofuels.

Rothamer DA, Donohue TJ.

Curr Opin Chem Biol. 2013 Jun;17(3):522-8. doi: 10.1016/j.cbpa.2013.03.039. Epub 2013 May 8. Review.

PMID:
23664492
[PubMed - indexed for MEDLINE]
16.

Proteins needed to activate a transcriptional response to the reactive oxygen species singlet oxygen.

Nam TW, Ziegelhoffer EC, Lemke RA, Donohue TJ.

MBio. 2013 Jan 8;4(1):e00541-12. doi: 10.1128/mBio.00541-12.

PMID:
23300250
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Revised sequence and annotation of the Rhodobacter sphaeroides 2.4.1 genome.

Kontur WS, Schackwitz WS, Ivanova N, Martin J, Labutti K, Deshpande S, Tice HN, Pennacchio C, Sodergren E, Weinstock GM, Noguera DR, Donohue TJ.

J Bacteriol. 2012 Dec;194(24):7016-7. doi: 10.1128/JB.01214-12.

PMID:
23209255
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Signal correlations in ecological niches can shape the organization and evolution of bacterial gene regulatory networks.

Dufour YS, Donohue TJ.

Adv Microb Physiol. 2012;61:1-36. doi: 10.1016/B978-0-12-394423-8.00001-9. Review.

PMID:
23046950
[PubMed - indexed for MEDLINE]
19.

Convergence of the transcriptional responses to heat shock and singlet oxygen stresses.

Dufour YS, Imam S, Koo BM, Green HA, Donohue TJ.

PLoS Genet. 2012 Sep;8(9):e1002929. doi: 10.1371/journal.pgen.1002929. Epub 2012 Sep 13.

PMID:
23028346
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Extracytoplasmic function σ factors of the widely distributed group ECF41 contain a fused regulatory domain.

Wecke T, Halang P, Staroń A, Dufour YS, Donohue TJ, Mascher T.

Microbiologyopen. 2012 Jun;1(2):194-213. doi: 10.1002/mbo3.22.

PMID:
22950025
[PubMed]
Free PMC Article
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