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Items: 1 to 20 of 240

1.

Decreased expression levels of PIWIL1, PIWIL2, and PIWIL4 are associated with worse survival in renal cell carcinoma patients.

Iliev R, Stanik M, Fedorko M, Poprach A, Vychytilova-Faltejskova P, Slaba K, Svoboda M, Fabian P, Pacik D, Dolezel J, Slaby O.

Onco Targets Ther. 2016 Jan 8;9:217-22. doi: 10.2147/OTT.S91295. eCollection 2016.

2.

BioNano genome mapping of individual chromosomes supports physical mapping and sequence assembly in complex plant genomes.

Staňková H, Hastie AR, Chan S, Vrána J, Tulpová Z, Kubaláková M, Visendi P, Hayashi S, Luo M, Batley J, Edwards D, Doležel J, Šimková H.

Plant Biotechnol J. 2016 Jan 23. doi: 10.1111/pbi.12513. [Epub ahead of print]

PMID:
26801360
3.

An efficient approach to BAC based assembly of complex genomes.

Visendi P, Berkman PJ, Hayashi S, Golicz AA, Bayer PE, Ruperao P, Hurgobin B, Montenegro J, Chan CK, Staňková H, Batley J, Šimková H, Doležel J, Edwards D.

Plant Methods. 2016 Jan 20;12:2. doi: 10.1186/s13007-016-0107-9. eCollection 2016.

4.

In Depth Characterization of Repetitive DNA in 23 Plant Genomes Reveals Sources of Genome Size Variation in the Legume Tribe Fabeae.

Macas J, Novák P, Pellicer J, Čížková J, Koblížková A, Neumann P, Fuková I, Doležel J, Kelly LJ, Leitch IJ.

PLoS One. 2015 Nov 25;10(11):e0143424. doi: 10.1371/journal.pone.0143424. eCollection 2015.

5.

Combination of MiR-378 and MiR-210 Serum Levels Enables Sensitive Detection of Renal Cell Carcinoma.

Fedorko M, Stanik M, Iliev R, Redova-Lojova M, Machackova T, Svoboda M, Pacik D, Dolezel J, Slaby O.

Int J Mol Sci. 2015 Sep 29;16(10):23382-9. doi: 10.3390/ijms161023382.

6.

Exploring the tertiary gene pool of bread wheat: sequence assembly and analysis of chromosome 5Mg of Aegilops geniculata.

Tiwari VK, Wang S, Danilova T, Koo DH, Vrána J, Kubaláková M, Hribova E, Rawat N, Kalia B, Singh N, Friebe B, Doležel J, Akhunov E, Poland J, Sabir JS, Gill BS.

Plant J. 2015 Nov;84(4):733-746. doi: 10.1111/tpj.13036.

PMID:
26408103
7.

Multiple displacement amplification of the DNA from single flow-sorted plant chromosome.

Cápal P, Blavet N, Vrána J, Kubaláková M, Doležel J.

Plant J. 2015 Nov;84(4):838-844. doi: 10.1111/tpj.13035.

PMID:
26400218
8.

Cytogenetic mapping with centromeric bacterial artificial chromosomes contigs shows that this recombination-poor region comprises more than half of barley chromosome 3H.

Aliyeva-Schnorr L, Beier S, Karafiátová M, Schmutzer T, Scholz U, Doležel J, Stein N, Houben A.

Plant J. 2015 Oct;84(2):385-94. doi: 10.1111/tpj.13006.

PMID:
26332657
9.

A high-resolution physical map integrating an anchored chromosome with the BAC physical maps of wheat chromosome 6B.

Kobayashi F, Wu J, Kanamori H, Tanaka T, Katagiri S, Karasawa W, Kaneko S, Watanabe S, Sakaguchi T, Hanawa Y, Fujisawa H, Kurita K, Abe C, Iehisa JC, Ohno R, Šafář J, Šimková H, Mukai Y, Hamada M, Saito M, Ishikawa G, Katayose Y, Endo TR, Takumi S, Nakamura T, Sato K, Ogihara Y, Hayakawa K, Doležel J, Nasuda S, Matsumoto T, Handa H.

BMC Genomics. 2015 Aug 12;16:595. doi: 10.1186/s12864-015-1803-y.

10.

Molecular and Cytogenetic Characterization of Wild Musa Species.

Čížková J, Hřibová E, Christelová P, Van den Houwe I, Häkkinen M, Roux N, Swennen R, Doležel J.

PLoS One. 2015 Aug 7;10(8):e0134096. doi: 10.1371/journal.pone.0134096. eCollection 2015.

11.

Sequencing of 15 622 gene-bearing BACs clarifies the gene-dense regions of the barley genome.

Muñoz-Amatriaín M, Lonardi S, Luo M, Madishetty K, Svensson JT, Moscou MJ, Wanamaker S, Jiang T, Kleinhofs A, Muehlbauer GJ, Wise RP, Stein N, Ma Y, Rodriguez E, Kudrna D, Bhat PR, Chao S, Condamine P, Heinen S, Resnik J, Wing R, Witt HN, Alpert M, Beccuti M, Bozdag S, Cordero F, Mirebrahim H, Ounit R, Wu Y, You F, Zheng J, Simková H, Dolezel J, Grimwood J, Schmutz J, Duma D, Altschmied L, Blake T, Bregitzer P, Cooper L, Dilbirligi M, Falk A, Feiz L, Graner A, Gustafson P, Hayes PM, Lemaux P, Mammadov J, Close TJ.

Plant J. 2015 Oct;84(1):216-27. doi: 10.1111/tpj.12959. Epub 2015 Sep 21.

PMID:
26252423
12.

Molecular organization and comparative analysis of chromosome 5B of the wild wheat ancestor Triticum dicoccoides.

Akpinar BA, Yuce M, Lucas S, Vrána J, Burešová V, Doležel J, Budak H.

Sci Rep. 2015 Jun 18;5:10763. doi: 10.1038/srep10763.

13.

The physical map of wheat chromosome 5DS revealed gene duplications and small rearrangements.

Akpinar BA, Magni F, Yuce M, Lucas SJ, Šimková H, Šafář J, Vautrin S, Bergès H, Cattonaro F, Doležel J, Budak H.

BMC Genomics. 2015 Jun 13;16:453. doi: 10.1186/s12864-015-1641-y.

14.

Flow sorting of C-genome chromosomes from wild relatives of wheat Aegilops markgrafii, Ae. triuncialis and Ae. cylindrica, and their molecular organization.

Molnár I, Vrána J, Farkas A, Kubaláková M, Cseh A, Molnár-Láng M, Doležel J.

Ann Bot. 2015 Aug;116(2):189-200. doi: 10.1093/aob/mcv073. Epub 2015 Jun 4.

PMID:
26043745
15.

Characterization of repetitive DNA landscape in wheat homeologous group 4 chromosomes.

Garbus I, Romero JR, Valarik M, Vanžurová H, Karafiátová M, Cáccamo M, Doležel J, Tranquilli G, Helguera M, Echenique V.

BMC Genomics. 2015 May 12;16:375. doi: 10.1186/s12864-015-1579-0.

16.

Challenges of flow-cytometric estimation of nuclear genome size in orchids, a plant group with both whole-genome and progressively partial endoreplication.

Trávníček P, Ponert J, Urfus T, Jersáková J, Vrána J, Hřibová E, Doležel J, Suda J.

Cytometry A. 2015 Oct;87(10):958-66. doi: 10.1002/cyto.a.22681. Epub 2015 Apr 30.

PMID:
25929591
17.

High-throughput physical map anchoring via BAC-pool sequencing.

Cviková K, Cattonaro F, Alaux M, Stein N, Mayer KF, Doležel J, Bartoš J.

BMC Plant Biol. 2015 Apr 11;15:99. doi: 10.1186/s12870-015-0429-1.

18.

Putative interchromosomal rearrangements in the hexaploid wheat (Triticum aestivum L.) genotype 'Chinese Spring' revealed by gene locations on homoeologous chromosomes.

Ma J, Stiller J, Zheng Z, Wei Y, Zheng YL, Yan G, Doležel J, Liu C.

BMC Evol Biol. 2015 Mar 11;15:37. doi: 10.1186/s12862-015-0313-5.

19.

Chromosomal genomics facilitates fine mapping of a Russian wheat aphid resistance gene.

Staňková H, Valárik M, Lapitan NL, Berkman PJ, Batley J, Edwards D, Luo MC, Tulpová Z, Kubaláková M, Stein N, Doležel J, Šimková H.

Theor Appl Genet. 2015 Jul;128(7):1373-83. doi: 10.1007/s00122-015-2512-2. Epub 2015 Apr 11.

PMID:
25862680
20.

New insights into the wheat chromosome 4D structure and virtual gene order, revealed by survey pyrosequencing.

Helguera M, Rivarola M, Clavijo B, Martis MM, Vanzetti LS, González S, Garbus I, Leroy P, Šimková H, Valárik M, Caccamo M, Doležel J, Mayer KF, Feuillet C, Tranquilli G, Paniego N, Echenique V.

Plant Sci. 2015 Apr;233:200-12. doi: 10.1016/j.plantsci.2014.12.004. Epub 2014 Dec 18.

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