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Results: 1 to 20 of 168

1.

Single-molecule correlated chemical probing of RNA.

Homan PJ, Favorov OV, Lavender CA, Kursun O, Ge X, Busan S, Dokholyan NV, Weeks KM.

Proc Natl Acad Sci U S A. 2014 Sep 9. pii: 201407306. [Epub ahead of print]

PMID:
25205807
[PubMed - as supplied by publisher]
2.

Potentiator ivacaftor abrogates pharmacological correction of ΔF508 CFTR in cystic fibrosis.

Cholon DM, Quinney NL, Fulcher ML, Esther CR Jr, Das J, Dokholyan NV, Randell SH, Boucher RC, Gentzsch M.

Sci Transl Med. 2014 Jul 23;6(246):246ra96. doi: 10.1126/scitranslmed.3008680.

PMID:
25101886
[PubMed - in process]
3.

Cu,Zn-Superoxide Dismutase without Zn Is Folded but Catalytically Inactive.

Nedd S, Redler RL, Proctor EA, Dokholyan NV, Alexandrova AN.

J Mol Biol. 2014 Jul 30. pii: S0022-2836(14)00364-7. doi: 10.1016/j.jmb.2014.07.016. [Epub ahead of print]

PMID:
25083917
[PubMed - as supplied by publisher]
4.

The N-terminal Domain Allosterically Regulates Cleavage and Activation of the Epithelial Sodium Channel.

Kota P, Buchner G, Chakraborty H, Dang YL, He H, Garcia GJ, Kubelka J, Gentzsch M, Stutts MJ, Dokholyan NV.

J Biol Chem. 2014 Aug 15;289(33):23029-42. doi: 10.1074/jbc.M114.570952. Epub 2014 Jun 28.

PMID:
24973914
[PubMed - in process]
5.

Pore dynamics and conductance of RyR1 transmembrane domain.

Shirvanyants D, Ramachandran S, Mei Y, Xu L, Meissner G, Dokholyan NV.

Biophys J. 2014 Jun 3;106(11):2375-84. doi: 10.1016/j.bpj.2014.04.023.

PMID:
24896116
[PubMed - in process]
6.

Discrete molecular dynamics can predict helical prestructured motifs in disordered proteins.

Szöllősi D, Horváth T, Han KH, Dokholyan NV, Tompa P, Kalmár L, Hegedűs T.

PLoS One. 2014 Apr 24;9(4):e95795. doi: 10.1371/journal.pone.0095795. eCollection 2014.

PMID:
24763499
[PubMed - in process]
Free PMC Article
7.

Identification of an actin binding surface on vinculin that mediates mechanical cell and focal adhesion properties.

Thompson PM, Tolbert CE, Shen K, Kota P, Palmer SM, Plevock KM, Orlova A, Galkin VE, Burridge K, Egelman EH, Dokholyan NV, Superfine R, Campbell SL.

Structure. 2014 May 6;22(5):697-706. doi: 10.1016/j.str.2014.03.002. Epub 2014 Mar 27.

PMID:
24685146
[PubMed - in process]
8.

Non-native soluble oligomers of Cu/Zn superoxide dismutase (SOD1) contain a conformational epitope linked to cytotoxicity in amyotrophic lateral sclerosis (ALS).

Redler RL, Fee L, Fay JM, Caplow M, Dokholyan NV.

Biochemistry. 2014 Apr 15;53(14):2423-32. doi: 10.1021/bi500158w. Epub 2014 Apr 2.

PMID:
24660965
[PubMed - indexed for MEDLINE]
9.

Intrinsic disorder mediates cooperative signal transduction in STIM1.

Furukawa Y, Teraguchi S, Ikegami T, Dagliyan O, Jin L, Hall D, Dokholyan NV, Namba K, Akira S, Kurosaki T, Baba Y, Standley DM.

J Mol Biol. 2014 May 15;426(10):2082-97. doi: 10.1016/j.jmb.2014.03.006. Epub 2014 Mar 17.

PMID:
24650897
[PubMed - indexed for MEDLINE]
Free Article
10.

Computational approaches to understanding protein aggregation in neurodegeneration.

Redler RL, Shirvanyants D, Dagliyan O, Ding F, Kim DN, Kota P, Proctor EA, Ramachandran S, Tandon A, Dokholyan NV.

J Mol Cell Biol. 2014 Apr;6(2):104-15. doi: 10.1093/jmcb/mju007. Epub 2014 Mar 11.

PMID:
24620031
[PubMed - in process]
Free Article
11.

The maturation of HIV-1 protease precursor studied by discrete molecular dynamics.

Kimura S, Caldarini M, Broglia RA, Dokholyan NV, Tiana G.

Proteins. 2014 Apr;82(4):633-9. doi: 10.1002/prot.24440. Epub 2013 Nov 22.

PMID:
24123234
[PubMed - in process]
12.

Identification of novel integrin binding partners for calcium and integrin binding protein 1 (CIB1): structural and thermodynamic basis of CIB1 promiscuity.

Freeman TC Jr, Black JL, Bray HG, Dagliyan O, Wu YI, Tripathy A, Dokholyan NV, Leisner TM, Parise LV.

Biochemistry. 2013 Oct 8;52(40):7082-90. doi: 10.1021/bi400678y. Epub 2013 Sep 25.

PMID:
24011356
[PubMed - indexed for MEDLINE]
13.

Protein HP1028 from the human pathogen Helicobacter pylori belongs to the lipocalin family.

Barison N, Cendron L, Loconte V, Proctor EA, Dokholyan NV, Zanotti G.

Acta Crystallogr D Biol Crystallogr. 2013 Aug;69(Pt 8):1387-94. doi: 10.1107/S0907444913008160. Epub 2013 Jul 13.

PMID:
23897462
[PubMed - indexed for MEDLINE]
14.

Predicting binding affinity of CSAR ligands using both structure-based and ligand-based approaches.

Fourches D, Muratov E, Ding F, Dokholyan NV, Tropsha A.

J Chem Inf Model. 2013 Aug 26;53(8):1915-22. doi: 10.1021/ci400216q. Epub 2013 Jul 17.

PMID:
23809015
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Knowledge-based design of a biosensor to quantify localized ERK activation in living cells.

Kummer L, Hsu CW, Dagliyan O, MacNevin C, Kaufholz M, Zimmermann B, Dokholyan NV, Hahn KM, Plückthun A.

Chem Biol. 2013 Jun 20;20(6):847-56. doi: 10.1016/j.chembiol.2013.04.016.

PMID:
23790495
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Submillisecond elastic recoil reveals molecular origins of fibrin fiber mechanics.

Hudson NE, Ding F, Bucay I, O'Brien ET 3rd, Gorkun OV, Superfine R, Lord ST, Dokholyan NV, Falvo MR.

Biophys J. 2013 Jun 18;104(12):2671-80. doi: 10.1016/j.bpj.2013.04.052.

PMID:
23790375
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Rational design of a ligand-controlled protein conformational switch.

Dagliyan O, Shirvanyants D, Karginov AV, Ding F, Fee L, Chandrasekaran SN, Freisinger CM, Smolen GA, Huttenlocher A, Hahn KM, Dokholyan NV.

Proc Natl Acad Sci U S A. 2013 Apr 23;110(17):6800-4. doi: 10.1073/pnas.1218319110. Epub 2013 Apr 8.

PMID:
23569285
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Dynamics intrinsic to cystic fibrosis transmembrane conductance regulator function and stability.

Chong PA, Kota P, Dokholyan NV, Forman-Kay JD.

Cold Spring Harb Perspect Med. 2013 Mar 1;3(3):a009522. doi: 10.1101/cshperspect.a009522. Review.

PMID:
23457292
[PubMed - indexed for MEDLINE]
19.

Structural determinants of skeletal muscle ryanodine receptor gating.

Ramachandran S, Chakraborty A, Xu L, Mei Y, Samsó M, Dokholyan NV, Meissner G.

J Biol Chem. 2013 Mar 1;288(9):6154-65. doi: 10.1074/jbc.M112.433789. Epub 2013 Jan 14.

PMID:
23319589
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Principles for understanding the accuracy of SHAPE-directed RNA structure modeling.

Leonard CW, Hajdin CE, Karabiber F, Mathews DH, Favorov OV, Dokholyan NV, Weeks KM.

Biochemistry. 2013 Jan 29;52(4):588-95. doi: 10.1021/bi300755u. Epub 2013 Jan 14.

PMID:
23316814
[PubMed - indexed for MEDLINE]
Free PMC Article

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