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Dynamic expression of long noncoding RNAs and repeat elements in synaptic plasticity.

Maag JL, Panja D, Sporild I, Patil S, Kaczorowski DC, Bramham CR, Dinger ME, Wibrand K.

Front Neurosci. 2015 Oct 1;9:351. doi: 10.3389/fnins.2015.00351. eCollection 2015.


Cyclin E2 is the predominant E-cyclin associated with NPAT in breast cancer cells.

Rogers S, Gloss BS, Lee CS, Sergio CM, Dinger ME, Musgrove EA, Burgess A, Caldon CE.

Cell Div. 2015 Feb 19;10:1. doi: 10.1186/s13008-015-0007-9. eCollection 2015.


Genome-wide discovery of human splicing branchpoints.

Mercer TR, Clark MB, Andersen SB, Brunck ME, Haerty W, Crawford J, Taft RJ, Nielsen LK, Dinger ME, Mattick JS.

Genome Res. 2015 Feb;25(2):290-303. doi: 10.1101/gr.182899.114. Epub 2015 Jan 5.


The functional characterization of long noncoding RNA SPRY4-IT1 in human melanoma cells.

Mazar J, Zhao W, Khalil AM, Lee B, Shelley J, Govindarajan SS, Yamamoto F, Ratnam M, Aftab MN, Collins S, Finck BN, Han X, Mattick JS, Dinger ME, Perera RJ.

Oncotarget. 2014 Oct 15;5(19):8959-69.


lncRNAdb v2.0: expanding the reference database for functional long noncoding RNAs.

Quek XC, Thomson DW, Maag JL, Bartonicek N, Signal B, Clark MB, Gloss BS, Dinger ME.

Nucleic Acids Res. 2015 Jan;43(Database issue):D168-73. doi: 10.1093/nar/gku988. Epub 2014 Oct 20.


Identification of a dinucleotide signature that discriminates coding from non-coding long RNAs.

Ulveling D, Dinger ME, Francastel C, Hubé F.

Front Genet. 2014 Sep 9;5:316. doi: 10.3389/fgene.2014.00316. eCollection 2014.


The role of microRNAs and long non-coding RNAs in the pathology, diagnosis, and management of melanoma.

Aftab MN, Dinger ME, Perera RJ.

Arch Biochem Biophys. 2014 Dec 1;563:60-70. doi: 10.1016/ Epub 2014 Jul 24. Review.


The histone demethylase JMJD1A induces cell migration and invasion by up-regulating the expression of the long noncoding RNA MALAT1.

Tee AE, Ling D, Nelson C, Atmadibrata B, Dinger ME, Xu N, Mizukami T, Liu PY, Liu B, Cheung B, Pasquier E, Haber M, Norris MD, Suzuki T, Marshall GM, Liu T.

Oncotarget. 2014 Apr 15;5(7):1793-804.


Genome-wide methylated CpG island profiles of melanoma cells reveal a melanoma coregulation network.

Li JL, Mazar J, Zhong C, Faulkner GJ, Govindarajan SS, Zhang Z, Dinger ME, Meredith G, Adams C, Zhang S, Mattick JS, Ray A, Perera RJ.

Sci Rep. 2013 Oct 16;3:2962. doi: 10.1038/srep02962.


Regulated expression of PTPRJ/CD148 and an antisense long noncoding RNA in macrophages by proinflammatory stimuli.

Dave RK, Dinger ME, Andrew M, Askarian-Amiri M, Hume DA, Kellie S.

PLoS One. 2013 Jun 28;8(6):e68306. doi: 10.1371/journal.pone.0068306. Print 2013.


Long noncoding RNAs and the genetics of cancer.

Cheetham SW, Gruhl F, Mattick JS, Dinger ME.

Br J Cancer. 2013 Jun 25;108(12):2419-25. doi: 10.1038/bjc.2013.233. Epub 2013 May 9. Review.


Saccharopolyspora erythraea's genome is organised in high-order transcriptional regions mediated by targeted degradation at the metabolic switch.

Marcellin E, Mercer TR, Licona-Cassani C, Palfreyman RW, Dinger ME, Steen JA, Mattick JS, Nielsen LK.

BMC Genomics. 2013 Jan 16;14:15. doi: 10.1186/1471-2164-14-15.


Pregnancy-induced noncoding RNA (PINC) associates with polycomb repressive complex 2 and regulates mammary epithelial differentiation.

Shore AN, Kabotyanski EB, Roarty K, Smith MA, Zhang Y, Creighton CJ, Dinger ME, Rosen JM.

PLoS Genet. 2012;8(7):e1002840. doi: 10.1371/journal.pgen.1002840. Epub 2012 Jul 26.


Identification of novel markers of mouse fetal ovary development.

Chen H, Palmer JS, Thiagarajan RD, Dinger ME, Lesieur E, Chiu H, Schulz A, Spiller C, Grimmond SM, Little MH, Koopman P, Wilhelm D.

PLoS One. 2012;7(7):e41683. doi: 10.1371/journal.pone.0041683. Epub 2012 Jul 26.


Expression and function of the protein tyrosine phosphatase receptor J (PTPRJ) in normal mammary epithelial cells and breast tumors.

Smart CE, Askarian Amiri ME, Wronski A, Dinger ME, Crawford J, Ovchinnikov DA, Vargas AC, Reid L, Simpson PT, Song S, Wiesner C, French JD, Dave RK, da Silva L, Purdon A, Andrew M, Mattick JS, Lakhani SR, Brown MA, Kellie S.

PLoS One. 2012;7(7):e40742. doi: 10.1371/journal.pone.0040742. Epub 2012 Jul 17.


Genome-wide analysis of long noncoding RNA stability.

Clark MB, Johnston RL, Inostroza-Ponta M, Fox AH, Fortini E, Moscato P, Dinger ME, Mattick JS.

Genome Res. 2012 May;22(5):885-98. doi: 10.1101/gr.131037.111. Epub 2012 Mar 9.


lncRNAs: finding the forest among the trees?

Dinger ME.

Mol Ther. 2011 Dec;19(12):2109-11. doi: 10.1038/mt.2011.251. No abstract available.


Targeted RNA sequencing reveals the deep complexity of the human transcriptome.

Mercer TR, Gerhardt DJ, Dinger ME, Crawford J, Trapnell C, Jeddeloh JA, Mattick JS, Rinn JL.

Nat Biotechnol. 2011 Nov 13;30(1):99-104. doi: 10.1038/nbt.2024.


RNAcentral: A vision for an international database of RNA sequences.

Bateman A, Agrawal S, Birney E, Bruford EA, Bujnicki JM, Cochrane G, Cole JR, Dinger ME, Enright AJ, Gardner PP, Gautheret D, Griffiths-Jones S, Harrow J, Herrero J, Holmes IH, Huang HD, Kelly KA, Kersey P, Kozomara A, Lowe TM, Marz M, Moxon S, Pruitt KD, Samuelsson T, Stadler PF, Vilella AJ, Vogel JH, Williams KP, Wright MW, Zwieb C.

RNA. 2011 Nov;17(11):1941-6. doi: 10.1261/rna.2750811. Epub 2011 Sep 22.


The human mitochondrial transcriptome.

Mercer TR, Neph S, Dinger ME, Crawford J, Smith MA, Shearwood AM, Haugen E, Bracken CP, Rackham O, Stamatoyannopoulos JA, Filipovska A, Mattick JS.

Cell. 2011 Aug 19;146(4):645-58. doi: 10.1016/j.cell.2011.06.051.

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