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Results: 9

1.

Representing kidney development using the gene ontology.

Alam-Faruque Y, Hill DP, Dimmer EC, Harris MA, Foulger RE, Tweedie S, Attrill H, Howe DG, Thomas SR, Davidson D, Woolf AS, Blake JA, Mungall CJ, O'Donovan C, Apweiler R, Huntley RP.

PLoS One. 2014 Jun 18;9(6):e99864. doi: 10.1371/journal.pone.0099864. eCollection 2014.

2.

A method for increasing expressivity of Gene Ontology annotations using a compositional approach.

Huntley RP, Harris MA, Alam-Faruque Y, Blake JA, Carbon S, Dietze H, Dimmer EC, Foulger RE, Hill DP, Khodiyar VK, Lock A, Lomax J, Lovering RC, Mutowo-Meullenet P, Sawford T, Van Auken K, Wood V, Mungall CJ.

BMC Bioinformatics. 2014 May 21;15:155. doi: 10.1186/1471-2105-15-155.

3.

Use of Gene Ontology Annotation to understand the peroxisome proteome in humans.

Mutowo-Meullenet P, Huntley RP, Dimmer EC, Alam-Faruque Y, Sawford T, Jesus Martin M, O'Donovan C, Apweiler R.

Database (Oxford). 2013 Jan 17;2013:bas062. doi: 10.1093/database/bas062. Print 2013.

4.

The impact of focused Gene Ontology curation of specific mammalian systems.

Alam-Faruque Y, Huntley RP, Khodiyar VK, Camon EB, Dimmer EC, Sawford T, Martin MJ, O'Donovan C, Talmud PJ, Scambler P, Apweiler R, Lovering RC.

PLoS One. 2011;6(12):e27541. doi: 10.1371/journal.pone.0027541. Epub 2011 Dec 9.

5.

The UniProt-GO Annotation database in 2011.

Dimmer EC, Huntley RP, Alam-Faruque Y, Sawford T, O'Donovan C, Martin MJ, Bely B, Browne P, Mun Chan W, Eberhardt R, Gardner M, Laiho K, Legge D, Magrane M, Pichler K, Poggioli D, Sehra H, Auchincloss A, Axelsen K, Blatter MC, Boutet E, Braconi-Quintaje S, Breuza L, Bridge A, Coudert E, Estreicher A, Famiglietti L, Ferro-Rojas S, Feuermann M, Gos A, Gruaz-Gumowski N, Hinz U, Hulo C, James J, Jimenez S, Jungo F, Keller G, Lemercier P, Lieberherr D, Masson P, Moinat M, Pedruzzi I, Poux S, Rivoire C, Roechert B, Schneider M, Stutz A, Sundaram S, Tognolli M, Bougueleret L, Argoud-Puy G, Cusin I, Duek-Roggli P, Xenarios I, Apweiler R.

Nucleic Acids Res. 2012 Jan;40(Database issue):D565-70. doi: 10.1093/nar/gkr1048. Epub 2011 Nov 28.

6.

Formalization of taxon-based constraints to detect inconsistencies in annotation and ontology development.

Deegan née Clark JI, Dimmer EC, Mungall CJ.

BMC Bioinformatics. 2010 Oct 25;11:530. doi: 10.1186/1471-2105-11-530.

7.

The Renal Gene Ontology Annotation Initiative.

Alam-Faruque Y, Dimmer EC, Huntley RP, O'Donovan C, Scambler P, Apweiler R.

Organogenesis. 2010 Apr-Jun;6(2):71-5. Review.

8.

Improvements to cardiovascular gene ontology.

Lovering RC, Dimmer EC, Talmud PJ.

Atherosclerosis. 2009 Jul;205(1):9-14. doi: 10.1016/j.atherosclerosis.2008.10.014. Epub 2008 Nov 1. Review.

9.

An evaluation of GO annotation retrieval for BioCreAtIvE and GOA.

Camon EB, Barrell DG, Dimmer EC, Lee V, Magrane M, Maslen J, Binns D, Apweiler R.

BMC Bioinformatics. 2005;6 Suppl 1:S17. Epub 2005 May 24.

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